RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SPANXDQ9BXN6 97 aa9.13□□□□□ -0.95
CLK3-227ENST00000570296 SPANXCQ9NY87 97 aa9.13□□□□□ -0.95
CLK3-227ENST00000570296 H7C2G1 150 aa9.12□□□□□ -0.95
CLK3-227ENST00000570296 IFITM1P13164 125 aa9.12□□□□□ -0.95
CLK3-227ENST00000570296 SMIM29Q86T20 159 aa9.12□□□□□ -0.95
CLK3-227ENST00000570296 LINC00308Q8TCZ7 52 aa9.12□□□□□ -0.95
CLK3-227ENST00000570296 TRBV10-2A0A0K0K1G8 114 aa9.11□□□□□ -0.95
CLK3-227ENST00000570296 NDUFC2O95298 119 aa9.11□□□□□ -0.95
CLK3-227ENST00000570296 LAMTOR3Q9UHA4 124 aa9.11□□□□□ -0.95
CLK3-227ENST00000570296 SOSTDC1Q6X4U4 206 aa9.09□□□□□ -0.95
CLK3-227ENST00000570296 Q75L30 129 aa9.09□□□□□ -0.95
CLK3-227ENST00000570296 SPANXB1Q9NS25 103 aaPredicted RBP9.09□□□□□ -0.95
CLK3-227ENST00000570296 TRBV20-1A0A075B6N2 111 aa9.08□□□□□ -0.96
CLK3-227ENST00000570296 SMIM6P0DI80 62 aa9.08□□□□□ -0.96
CLK3-227ENST00000570296 S100A7L2Q5SY68 101 aa9.08□□□□□ -0.96
CLK3-227ENST00000570296 PRO1933Q9H354 126 aa9.08□□□□□ -0.96
CLK3-227ENST00000570296 LOC105371267A0A1B0GV96 52 aa9.07□□□□□ -0.96
CLK3-227ENST00000570296 MUSTN1Q8IVN3 82 aa9.07□□□□□ -0.96
CLK3-227ENST00000570296 HIST1H4GQ99525 98 aa9.07□□□□□ -0.96
CLK3-227ENST00000570296 LINC00518Q8N0U6 118 aa9.06□□□□□ -0.96
CLK3-227ENST00000570296 HIGD1BQ9P298 99 aa9.05□□□□□ -0.96
CLK3-227ENST00000570296 CBY1Q9Y3M2 126 aa9.05□□□□□ -0.96
CLK3-227ENST00000570296 TRAV23DV6A0A075B6W5 121 aa9.04□□□□□ -0.96
CLK3-227ENST00000570296 EIF4EBP3O60516 100 aaPredicted RBP9.04□□□□□ -0.96
CLK3-227ENST00000570296 OR13C6PQ8NH95 151 aa9.04□□□□□ -0.96
CLK3-227ENST00000570296 UQCR10Q9UDW1 63 aa9.04□□□□□ -0.96
CLK3-227ENST00000570296 ZNF73O43830 326 aaPredicted RBP9.03□□□□□ -0.96
CLK3-227ENST00000570296 Q1RN00 199 aa9.02□□□□□ -0.97
CLK3-227ENST00000570296 TAL2Q16559 108 aa9□□□□□ -0.97
CLK3-227ENST00000570296 C20orf166-AS1Q96NR2 134 aa9□□□□□ -0.97
CLK3-227ENST00000570296 TRAV13-2A0A0B4J235 113 aa8.99□□□□□ -0.97
CLK3-227ENST00000570296 C6orf99Q4VX62 202 aa8.99□□□□□ -0.97
CLK3-227ENST00000570296 C2orf91Q6ZV80 131 aa8.99□□□□□ -0.97
CLK3-227ENST00000570296 A4D1N5 150 aa8.98□□□□□ -0.97
CLK3-227ENST00000570296 A6NDN8 102 aa8.98□□□□□ -0.97
CLK3-227ENST00000570296 HINT1P49773 126 aaPredicted RBP8.98□□□□□ -0.97
CLK3-227ENST00000570296 TCL1BO95988 128 aa8.97□□□□□ -0.97
CLK3-227ENST00000570296 C12orf57Q99622 126 aa8.97□□□□□ -0.97
CLK3-227ENST00000570296 TMEM238LA0A1B0GVL6 79 aa8.96□□□□□ -0.98
CLK3-227ENST00000570296 A6NJY4 79 aa8.96□□□□□ -0.98
CLK3-227ENST00000570296 CEND1Q8N111 149 aa8.96□□□□□ -0.98
CLK3-227ENST00000570296 OBSCN-AS1Q96MR7 158 aa8.96□□□□□ -0.98
CLK3-227ENST00000570296 DHRS4-AS1Q9P1J3 65 aa8.96□□□□□ -0.98
CLK3-227ENST00000570296 HSD52Q0P140 79 aa8.95□□□□□ -0.98
CLK3-227ENST00000570296 TSTD3H0UI37 97 aa8.94□□□□□ -0.98
CLK3-227ENST00000570296 FAM236DA0A1B0GTK5 79 aa8.93□□□□□ -0.98
CLK3-227ENST00000570296 FAM236CP0DP71 79 aa8.93□□□□□ -0.98
CLK3-227ENST00000570296 RAB37Q96AX2 223 aa8.93□□□□□ -0.98
CLK3-227ENST00000570296 MDN1Q9NU22 5596 aa8.89□□□□□ -0.99
CLK3-227ENST00000570296 TEX49A0A1B0GTD5 131 aa8.89□□□□□ -0.99
CLK3-227ENST00000570296 A0A0B4J2C4 111 aa8.88□□□□□ -0.99
CLK3-227ENST00000570296 A0A0G2JQZ4 141 aa8.88□□□□□ -0.99
CLK3-227ENST00000570296 FXYD2P54710 66 aa8.87□□□□□ -0.99
CLK3-227ENST00000570296 VAMP3Q15836 100 aa8.87□□□□□ -0.99
CLK3-227ENST00000570296 DEFB105AQ8NG35 78 aa8.87□□□□□ -0.99
CLK3-227ENST00000570296 M0R143 59 aa8.86□□□□□ -0.99
CLK3-227ENST00000570296 COX7BP24311 80 aa8.86□□□□□ -0.99
CLK3-227ENST00000570296 SMIM11BQ8TCY0 68 aa8.86□□□□□ -0.99
CLK3-227ENST00000570296 TRBV7-6A0A0J9YX20 115 aa8.85□□□□□ -0.99
CLK3-227ENST00000570296 NHP2Q9NX24 153 aaKnown RBP8.85□□□□□ -0.99
CLK3-227ENST00000570296 A0A1B0GWB2 263 aa8.84□□□□□ -0.99
CLK3-227ENST00000570296 PRO1854Q9UHT4 67 aa8.84□□□□□ -0.99
CLK3-227ENST00000570296 ELOF1P60002 83 aaKnown RBP8.82□□□□□ -1
CLK3-227ENST00000570296 BVES-AS1Q5T3Y7 98 aa8.82□□□□□ -1
CLK3-227ENST00000570296 Q96NJ1 140 aa8.82□□□□□ -1
CLK3-227ENST00000570296 RBM12B-AS1Q9P1G2 102 aa8.81□□□□□ -1
CLK3-227ENST00000570296 KMT2DO14686 5537 aa8.81□□□□□ -1
CLK3-227ENST00000570296 A8MUU9 505 aa8.79□□□□□ -1
CLK3-227ENST00000570296 MPLKIPQ8TAP9 179 aa8.79□□□□□ -1
CLK3-227ENST00000570296 K7ERJ3 54 aa8.77□□□□□ -1.01
CLK3-227ENST00000570296 SNCGO76070 127 aa8.77□□□□□ -1.01
CLK3-227ENST00000570296 KRTAP2-3P0C7H8 128 aa8.77□□□□□ -1.01
CLK3-227ENST00000570296 IGFL1Q6UW32 110 aa8.77□□□□□ -1.01
CLK3-227ENST00000570296 KRTAP2-4Q9BYR9 128 aa8.77□□□□□ -1.01
CLK3-227ENST00000570296 PSMB2P49721 201 aa8.76□□□□□ -1.01
CLK3-227ENST00000570296 IGLV5-48A0A075B6I7 105 aa8.75□□□□□ -1.01
CLK3-227ENST00000570296 H0YGX0 51 aa8.75□□□□□ -1.01
CLK3-227ENST00000570296 COX6CP09669 75 aa8.75□□□□□ -1.01
CLK3-227ENST00000570296 BATFQ16520 125 aa8.74□□□□□ -1.01
CLK3-227ENST00000570296 hADV29S1A0JD25 119 aa8.73□□□□□ -1.01
CLK3-227ENST00000570296 LINC00575Q6W349 94 aa8.73□□□□□ -1.01
CLK3-227ENST00000570296 HRES1P13985 223 aa8.71□□□□□ -1.02
CLK3-227ENST00000570296 TRIAP1O43715 76 aa8.7□□□□□ -1.02
CLK3-227ENST00000570296 KRTAP5-9P26371 169 aa8.7□□□□□ -1.02
CLK3-227ENST00000570296 SCGB1C2P0DMR2 95 aa8.69□□□□□ -1.02
CLK3-227ENST00000570296 Q8N9P0 234 aaPredicted RBP8.69□□□□□ -1.02
CLK3-227ENST00000570296 TRBV7-7A0A0K0K1E9 115 aa8.68□□□□□ -1.02
CLK3-227ENST00000570296 A8MWP4 228 aa8.67□□□□□ -1.02
CLK3-227ENST00000570296 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.67□□□□□ -1.02
CLK3-227ENST00000570296 A0A1B0GX51 115 aa8.66□□□□□ -1.02
CLK3-227ENST00000570296 Q6ZQY7 126 aa8.66□□□□□ -1.02
CLK3-227ENST00000570296 PCP4L1A6NKN8 68 aa8.65□□□□□ -1.02
CLK3-227ENST00000570296 KRTAP16-1A8MUX0 517 aa8.65□□□□□ -1.02
CLK3-227ENST00000570296 GHRHP01286 108 aa8.65□□□□□ -1.02
CLK3-227ENST00000570296 DNAL4O96015 105 aa8.64□□□□□ -1.03
CLK3-227ENST00000570296 OCIAD2Q56VL3 154 aa8.64□□□□□ -1.03
CLK3-227ENST00000570296 CLEC2BQ92478 149 aa8.63□□□□□ -1.03
CLK3-227ENST00000570296 FAM218AQ96MZ4 157 aa8.63□□□□□ -1.03
CLK3-227ENST00000570296 F8WEM9 126 aa8.62□□□□□ -1.03
CLK3-227ENST00000570296 LYRM7Q5U5X0 104 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 224.6 ms