RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 TLX1NBP0CAT3 122 aa5.6□□□□□ -1.51
LINC00558-201ENST00000569422 PRLHP81277 87 aa5.6□□□□□ -1.51
LINC00558-201ENST00000569422 CHTF8P0CG12 524 aa5.6□□□□□ -1.51
LINC00558-201ENST00000569422 FUSP35637 526 aaKnown RBP eCLIP5.6□□□□□ -1.51
LINC00558-201ENST00000569422 LINC01554Q52M75 96 aa5.6□□□□□ -1.51
LINC00558-201ENST00000569422 FAM229BQ4G0N7 80 aa5.59□□□□□ -1.51
LINC00558-201ENST00000569422 A6NN06 94 aa5.59□□□□□ -1.51
LINC00558-201ENST00000569422 BPY2O14599 106 aa5.59□□□□□ -1.51
LINC00558-201ENST00000569422 HIGD2AQ9BW72 106 aa5.59□□□□□ -1.51
LINC00558-201ENST00000569422 SNURFQ9Y675 71 aa5.59□□□□□ -1.51
LINC00558-201ENST00000569422 DHRS4-AS1Q9P1J3 65 aa5.59□□□□□ -1.52
LINC00558-201ENST00000569422 C1orf137Q5JT78 98 aa5.58□□□□□ -1.52
LINC00558-201ENST00000569422 REG3GQ6UW15 175 aa5.58□□□□□ -1.52
LINC00558-201ENST00000569422 SRRM2Q9UQ35 2752 aaKnown RBP5.57□□□□□ -1.52
LINC00558-201ENST00000569422 CXCL6P80162 114 aa5.57□□□□□ -1.52
LINC00558-201ENST00000569422 IGHV6-1A0A0B4J1U7 121 aa5.57□□□□□ -1.52
LINC00558-201ENST00000569422 KRTAP4-16G5E9R7 235 aaPredicted RBP5.57□□□□□ -1.52
LINC00558-201ENST00000569422 DNAH7Q8WXX0 4024 aa5.56□□□□□ -1.52
LINC00558-201ENST00000569422 PSPHP1O15172 72 aa5.56□□□□□ -1.52
LINC00558-201ENST00000569422 KLKP1Q107X0 134 aa5.56□□□□□ -1.52
LINC00558-201ENST00000569422 Q1T7F1 81 aa5.56□□□□□ -1.52
LINC00558-201ENST00000569422 DNAH1Q9P2D7 4330 aa5.55□□□□□ -1.52
LINC00558-201ENST00000569422 A0A1W2PNM2 257 aa5.55□□□□□ -1.52
LINC00558-201ENST00000569422 DEFB116Q30KQ4 102 aa5.55□□□□□ -1.52
LINC00558-201ENST00000569422 DNAH9Q9NYC9 4486 aa5.55□□□□□ -1.52
LINC00558-201ENST00000569422 SPRR1AP35321 89 aa5.55□□□□□ -1.52
LINC00558-201ENST00000569422 APLNQ9ULZ1 77 aa5.55□□□□□ -1.52
LINC00558-201ENST00000569422 IGLV5-37A0A075B6J1 123 aa5.54□□□□□ -1.52
LINC00558-201ENST00000569422 IGLV5-48A0A075B6I7 105 aa5.53□□□□□ -1.52
LINC00558-201ENST00000569422 TRAV7A0A075B6U4 112 aa5.53□□□□□ -1.52
LINC00558-201ENST00000569422 C16orf90A8MZG2 172 aa5.53□□□□□ -1.52
LINC00558-201ENST00000569422 ATP11AUNQ6ZP68 121 aa5.53□□□□□ -1.52
LINC00558-201ENST00000569422 F8WEM9 126 aa5.53□□□□□ -1.52
LINC00558-201ENST00000569422 KRTAP11-1Q8IUC1 163 aa5.53□□□□□ -1.52
LINC00558-201ENST00000569422 UBE2AP49459 152 aa5.52□□□□□ -1.53
LINC00558-201ENST00000569422 IGKV4-1P06312 121 aa5.52□□□□□ -1.53
LINC00558-201ENST00000569422 NDUFC1O43677 76 aa5.51□□□□□ -1.53
LINC00558-201ENST00000569422 LINC00476Q8WZB0 136 aa5.51□□□□□ -1.53
LINC00558-201ENST00000569422 Q8NBF4 154 aa5.51□□□□□ -1.53
LINC00558-201ENST00000569422 PLECQ15149 4684 aaKnown RBP5.5□□□□□ -1.53
LINC00558-201ENST00000569422 SMIM29Q86T20 159 aa5.5□□□□□ -1.53
LINC00558-201ENST00000569422 PANO1I0J062 215 aa5.49□□□□□ -1.53
LINC00558-201ENST00000569422 B9D2Q9BPU9 175 aa5.49□□□□□ -1.53
LINC00558-201ENST00000569422 CNBPP62633 177 aaKnown RBP5.49□□□□□ -1.53
LINC00558-201ENST00000569422 A0A087WSZ3 146 aa5.48□□□□□ -1.53
LINC00558-201ENST00000569422 NBDYA0A0U1RRE5 68 aa5.48□□□□□ -1.53
LINC00558-201ENST00000569422 A8MU10 97 aa5.48□□□□□ -1.53
LINC00558-201ENST00000569422 IGFL1Q6UW32 110 aa5.48□□□□□ -1.53
LINC00558-201ENST00000569422 K7EQZ3 153 aa5.47□□□□□ -1.53
LINC00558-201ENST00000569422 C14orf177Q52M58 125 aa5.47□□□□□ -1.53
LINC00558-201ENST00000569422 SEC61BP60468 96 aaKnown RBP5.47□□□□□ -1.53
LINC00558-201ENST00000569422 NOTCH2NLQ7Z3S9 236 aa5.46□□□□□ -1.54
LINC00558-201ENST00000569422 RPL37AP61513 92 aaKnown RBP5.46□□□□□ -1.54
LINC00558-201ENST00000569422 TMEM254Q8TBM7 123 aa5.46□□□□□ -1.54
LINC00558-201ENST00000569422 LRCOL1A6NCL2 159 aa5.45□□□□□ -1.54
LINC00558-201ENST00000569422 BCE1O60756 84 aa5.45□□□□□ -1.54
LINC00558-201ENST00000569422 C9orf163Q8N9P6 203 aa5.45□□□□□ -1.54
LINC00558-201ENST00000569422 DSCR10P59022 87 aa5.45□□□□□ -1.54
LINC00558-201ENST00000569422 WFDC13Q8IUB5 93 aa5.44□□□□□ -1.54
LINC00558-201ENST00000569422 SPRR4Q96PI1 79 aa5.44□□□□□ -1.54
LINC00558-201ENST00000569422 NUPR2A6NF83 97 aa5.44□□□□□ -1.54
LINC00558-201ENST00000569422 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.43□□□□□ -1.54
LINC00558-201ENST00000569422 STARD9Q9P2P6 4700 aa5.43□□□□□ -1.54
LINC00558-201ENST00000569422 CDK2AP2O75956 126 aa5.43□□□□□ -1.54
LINC00558-201ENST00000569422 OCR1Q9BZK8 76 aa5.43□□□□□ -1.54
LINC00558-201ENST00000569422 IGLV9-49A0A0B4J1Y8 123 aa5.42□□□□□ -1.54
LINC00558-201ENST00000569422 SPTSSBQ8NFR3 76 aa5.42□□□□□ -1.54
LINC00558-201ENST00000569422 PRKDCP78527 4128 aaKnown RBP5.42□□□□□ -1.54
LINC00558-201ENST00000569422 TGP01266 2768 aa5.42□□□□□ -1.54
LINC00558-201ENST00000569422 TRAV22A0A0B4J277 110 aa5.41□□□□□ -1.54
LINC00558-201ENST00000569422 Q6ZRN7 208 aaPredicted RBP5.41□□□□□ -1.54
LINC00558-201ENST00000569422 MEGF8Q7Z7M0 2845 aa5.4□□□□□ -1.54
LINC00558-201ENST00000569422 KMT2AQ03164 3969 aa5.4□□□□□ -1.54
LINC00558-201ENST00000569422 DNHD1Q96M86 4753 aa5.4□□□□□ -1.54
LINC00558-201ENST00000569422 ANAPC11Q9NYG5 84 aa5.4□□□□□ -1.55
LINC00558-201ENST00000569422 HCG22E2RYF7 251 aa5.39□□□□□ -1.55
LINC00558-201ENST00000569422 A0A1B0GW54 56 aa5.39□□□□□ -1.55
LINC00558-201ENST00000569422 A0A087WTM6 91 aa5.38□□□□□ -1.55
LINC00558-201ENST00000569422 PRR4Q16378 134 aa5.38□□□□□ -1.55
LINC00558-201ENST00000569422 RTL8CO15255 209 aa5.37□□□□□ -1.55
LINC00558-201ENST00000569422 LY6G6CO95867 125 aa5.37□□□□□ -1.55
LINC00558-201ENST00000569422 Q5VV11 94 aa5.37□□□□□ -1.55
LINC00558-201ENST00000569422 hDV103S1A0JD37 113 aa5.36□□□□□ -1.55
LINC00558-201ENST00000569422 SPACA4Q8TDM5 124 aa5.35□□□□□ -1.55
LINC00558-201ENST00000569422 FRAS1Q86XX4 4008 aa5.35□□□□□ -1.55
LINC00558-201ENST00000569422 IGLV8-61A0A075B6I0 122 aa5.34□□□□□ -1.55
LINC00558-201ENST00000569422 DYNC2H1Q8NCM8 4307 aaKnown RBP5.34□□□□□ -1.55
LINC00558-201ENST00000569422 PSORS1C2Q9UIG4 136 aa5.34□□□□□ -1.56
LINC00558-201ENST00000569422 IGLV5-52A0A0A0MRZ9 124 aa5.33□□□□□ -1.56
LINC00558-201ENST00000569422 RETNLBQ9BQ08 111 aa5.32□□□□□ -1.56
LINC00558-201ENST00000569422 CASC2Q6XLA1 102 aa5.32□□□□□ -1.56
LINC00558-201ENST00000569422 SPRR1BP22528 89 aa5.32□□□□□ -1.56
LINC00558-201ENST00000569422 MOBPQ13875 183 aa5.32□□□□□ -1.56
LINC00558-201ENST00000569422 DNAH2Q9P225 4427 aa5.32□□□□□ -1.56
LINC00558-201ENST00000569422 PRAC1Q96KF2 57 aa5.31□□□□□ -1.56
LINC00558-201ENST00000569422 C1orf134Q5TEV5 83 aa5.31□□□□□ -1.56
LINC00558-201ENST00000569422 KRTAP13-1Q8IUC0 172 aa5.31□□□□□ -1.56
LINC00558-201ENST00000569422 LINC00208Q96KT6 92 aa5.31□□□□□ -1.56
LINC00558-201ENST00000569422 ADM2Q7Z4H4 148 aa5.3□□□□□ -1.56
LINC00558-201ENST00000569422 VPS13DQ5THJ4 4388 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms