RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 SERP1Q9Y6X1 66 aa3.87□□□□□ -1.79
CLN3-223ENST00000566472 STAB1Q9NY15 2570 aa3.87□□□□□ -1.79
CLN3-223ENST00000566472 A0A087WSZ3 146 aa3.86□□□□□ -1.79
CLN3-223ENST00000566472 HCG22E2RYF7 251 aa3.86□□□□□ -1.79
CLN3-223ENST00000566472 K7EQZ3 153 aa3.86□□□□□ -1.79
CLN3-223ENST00000566472 ZNF706Q9Y5V0 76 aaPredicted RBP3.86□□□□□ -1.79
CLN3-223ENST00000566472 SNURFQ9Y675 71 aa3.86□□□□□ -1.79
CLN3-223ENST00000566472 DYNC2H1Q8NCM8 4307 aaKnown RBP3.86□□□□□ -1.79
CLN3-223ENST00000566472 LINC00483Q53H64 154 aa3.85□□□□□ -1.79
CLN3-223ENST00000566472 PLAC8Q9NZF1 115 aa3.85□□□□□ -1.79
CLN3-223ENST00000566472 PANO1I0J062 215 aa3.84□□□□□ -1.79
CLN3-223ENST00000566472 RTL8CO15255 209 aa3.84□□□□□ -1.79
CLN3-223ENST00000566472 C5orf47Q569G3 176 aa3.84□□□□□ -1.79
CLN3-223ENST00000566472 SVIPQ8NHG7 77 aa3.84□□□□□ -1.79
CLN3-223ENST00000566472 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.84□□□□□ -1.79
CLN3-223ENST00000566472 A8MWP4 228 aa3.83□□□□□ -1.8
CLN3-223ENST00000566472 LINC00472Q9H8W2 130 aa3.83□□□□□ -1.8
CLN3-223ENST00000566472 DNAH9Q9NYC9 4486 aa3.82□□□□□ -1.8
CLN3-223ENST00000566472 IGLV5-52A0A0A0MRZ9 124 aa3.82□□□□□ -1.8
CLN3-223ENST00000566472 KRTAP29-1A8MX34 341 aaPredicted RBP3.82□□□□□ -1.8
CLN3-223ENST00000566472 H3BPC8 53 aa3.82□□□□□ -1.8
CLN3-223ENST00000566472 OXTP01178 125 aa3.82□□□□□ -1.8
CLN3-223ENST00000566472 PRR15Q8IV56 129 aa3.82□□□□□ -1.8
CLN3-223ENST00000566472 ZCCHC13Q8WW36 166 aaKnown RBP3.82□□□□□ -1.8
CLN3-223ENST00000566472 FAM30AQ9NZY2 134 aa3.82□□□□□ -1.8
CLN3-223ENST00000566472 FLNBO75369 2602 aaKnown RBP3.82□□□□□ -1.8
CLN3-223ENST00000566472 A0A0G2JQZ4 141 aa3.81□□□□□ -1.8
CLN3-223ENST00000566472 C1orf134Q5TEV5 83 aa3.81□□□□□ -1.8
CLN3-223ENST00000566472 ZNF861PO60384 105 aa3.8□□□□□ -1.8
CLN3-223ENST00000566472 PSORS1C2Q9UIG4 136 aa3.8□□□□□ -1.8
CLN3-223ENST00000566472 COL6A5A8TX70 2615 aa3.8□□□□□ -1.8
CLN3-223ENST00000566472 NOTCH1P46531 2555 aa3.8□□□□□ -1.8
CLN3-223ENST00000566472 SMIM26A0A096LP01 95 aa3.79□□□□□ -1.8
CLN3-223ENST00000566472 NDUFB1O75438 58 aa3.79□□□□□ -1.8
CLN3-223ENST00000566472 MP68P56378 58 aa3.79□□□□□ -1.8
CLN3-223ENST00000566472 CASC2Q6XLA1 102 aa3.79□□□□□ -1.8
CLN3-223ENST00000566472 WWC2-AS2Q96NR7 200 aa3.79□□□□□ -1.8
CLN3-223ENST00000566472 MOBPQ13875 183 aa3.78□□□□□ -1.8
CLN3-223ENST00000566472 DEFB116Q30KQ4 102 aa3.78□□□□□ -1.8
CLN3-223ENST00000566472 C4orf48Q5BLP8 95 aa3.78□□□□□ -1.8
CLN3-223ENST00000566472 WFDC13Q8IUB5 93 aa3.78□□□□□ -1.8
CLN3-223ENST00000566472 MGAM2Q2M2H8 2515 aa3.78□□□□□ -1.8
CLN3-223ENST00000566472 PKD1L1Q8TDX9 2849 aa3.77□□□□□ -1.81
CLN3-223ENST00000566472 IGLV9-49A0A0B4J1Y8 123 aa3.77□□□□□ -1.81
CLN3-223ENST00000566472 MMP24-AS1A0A0U1RRL7 71 aa3.77□□□□□ -1.81
CLN3-223ENST00000566472 Q5XG85 94 aa3.77□□□□□ -1.81
CLN3-223ENST00000566472 CYP4F30PQ9H0H9 118 aa3.77□□□□□ -1.81
CLN3-223ENST00000566472 hDV103S1A0JD37 113 aa3.76□□□□□ -1.81
CLN3-223ENST00000566472 IGLV7-43P04211 117 aa3.76□□□□□ -1.81
CLN3-223ENST00000566472 CD164Q04900 197 aa3.76□□□□□ -1.81
CLN3-223ENST00000566472 KRTAP21-3Q3LHN1 58 aa3.76□□□□□ -1.81
CLN3-223ENST00000566472 ASB16-AS1Q495Z4 193 aa3.76□□□□□ -1.81
CLN3-223ENST00000566472 Q96NJ1 140 aa3.76□□□□□ -1.81
CLN3-223ENST00000566472 NBEAL1Q6ZS30 2694 aa3.75□□□□□ -1.81
CLN3-223ENST00000566472 TRAV22A0A0B4J277 110 aa3.75□□□□□ -1.81
CLN3-223ENST00000566472 H0Y9P7 68 aa3.75□□□□□ -1.81
CLN3-223ENST00000566472 LY6G6CO95867 125 aa3.75□□□□□ -1.81
CLN3-223ENST00000566472 SPANXA2-OT1Q8N9U9 137 aa3.75□□□□□ -1.81
CLN3-223ENST00000566472 TP53AIP1Q9HCN2 124 aa3.75□□□□□ -1.81
CLN3-223ENST00000566472 STAB2Q8WWQ8 2551 aa3.74□□□□□ -1.81
CLN3-223ENST00000566472 SSBP3-AS1Q7Z2R9 100 aa3.74□□□□□ -1.81
CLN3-223ENST00000566472 C8orf17Q9NRJ1 99 aa3.74□□□□□ -1.81
CLN3-223ENST00000566472 A0A1B0GVX0 72 aa3.73□□□□□ -1.81
CLN3-223ENST00000566472 CDK2AP2O75956 126 aa3.73□□□□□ -1.81
CLN3-223ENST00000566472 PLECQ15149 4684 aaKnown RBP3.73□□□□□ -1.81
CLN3-223ENST00000566472 VPS13DQ5THJ4 4388 aa3.73□□□□□ -1.81
CLN3-223ENST00000566472 Q6ZSA8 131 aa3.72□□□□□ -1.81
CLN3-223ENST00000566472 FP248Q71RG6 208 aaPredicted RBP3.72□□□□□ -1.81
CLN3-223ENST00000566472 LINC00208Q96KT6 92 aa3.72□□□□□ -1.81
CLN3-223ENST00000566472 C8orf87E5RJ46 101 aa3.71□□□□□ -1.82
CLN3-223ENST00000566472 C4orf26Q17RF5 130 aa3.71□□□□□ -1.82
CLN3-223ENST00000566472 FAM229BQ4G0N7 80 aa3.71□□□□□ -1.82
CLN3-223ENST00000566472 DNAH10Q8IVF4 4471 aa3.7□□□□□ -1.82
CLN3-223ENST00000566472 HRCT1Q6UXD1 115 aa3.7□□□□□ -1.82
CLN3-223ENST00000566472 CIRBP-AS1Q8TBR5 109 aa3.7□□□□□ -1.82
CLN3-223ENST00000566472 MRPL34Q9BQ48 92 aaKnown RBP3.7□□□□□ -1.82
CLN3-223ENST00000566472 DNAH7Q8WXX0 4024 aa3.7□□□□□ -1.82
CLN3-223ENST00000566472 KRTAP10-2P60368 255 aa3.69□□□□□ -1.82
CLN3-223ENST00000566472 C1orf64Q8NEQ6 169 aa3.69□□□□□ -1.82
CLN3-223ENST00000566472 STARD9Q9P2P6 4700 aa3.69□□□□□ -1.82
CLN3-223ENST00000566472 DNAH6Q9C0G6 4158 aa3.69□□□□□ -1.82
CLN3-223ENST00000566472 DNAH17Q9UFH2 4485 aa3.68□□□□□ -1.82
CLN3-223ENST00000566472 IGHV6-1A0A0B4J1U7 121 aa3.68□□□□□ -1.82
CLN3-223ENST00000566472 ANAPC11Q9NYG5 84 aa3.68□□□□□ -1.82
CLN3-223ENST00000566472 KRTAP10-1P60331 282 aa3.67□□□□□ -1.82
CLN3-223ENST00000566472 V9GYY9 64 aa3.67□□□□□ -1.82
CLN3-223ENST00000566472 ALMS1Q8TCU4 4167 aa3.66□□□□□ -1.82
CLN3-223ENST00000566472 IGLV7-46A0A075B6I9 117 aa3.66□□□□□ -1.82
CLN3-223ENST00000566472 LOC101927531A0A1B0GV80 90 aa3.66□□□□□ -1.82
CLN3-223ENST00000566472 Q1T7F1 81 aa3.66□□□□□ -1.82
CLN3-223ENST00000566472 PRKDCP78527 4128 aaKnown RBP3.66□□□□□ -1.82
CLN3-223ENST00000566472 C1orf195Q5TG92 126 aa3.65□□□□□ -1.83
CLN3-223ENST00000566472 LIMD2Q9BT23 127 aa3.65□□□□□ -1.83
CLN3-223ENST00000566472 CSMD3Q7Z407 3707 aa3.65□□□□□ -1.83
CLN3-223ENST00000566472 NDUFS5O43920 106 aa3.64□□□□□ -1.83
CLN3-223ENST00000566472 MPLKIPQ8TAP9 179 aa3.64□□□□□ -1.83
CLN3-223ENST00000566472 COL7A1Q02388 2944 aa3.64□□□□□ -1.83
CLN3-223ENST00000566472 PRR4Q16378 134 aa3.63□□□□□ -1.83
CLN3-223ENST00000566472 KRTAP13-3Q3SY46 172 aa3.63□□□□□ -1.83
CLN3-223ENST00000566472 KRTAP13-2Q52LG2 175 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms