RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SMIM29Q86T20 159 aa18.42■□□□□ 0.54
CTCF-203ENST00000566078 JMJD7-PLA2G4BH0Y9G9 81 aa18.41■□□□□ 0.54
CTCF-203ENST00000566078 KRTAP10-4P60372 401 aaPredicted RBP18.41■□□□□ 0.54
CTCF-203ENST00000566078 OBSCN-AS1Q96MR7 158 aa18.41■□□□□ 0.54
CTCF-203ENST00000566078 LINC00483Q53H64 154 aa18.39■□□□□ 0.53
CTCF-203ENST00000566078 FAM229AH3BQW9 127 aa18.38■□□□□ 0.53
CTCF-203ENST00000566078 KIAA1109Q2LD37 5005 aa18.36■□□□□ 0.53
CTCF-203ENST00000566078 RBM3P98179 157 aaKnown RBP18.36■□□□□ 0.53
CTCF-203ENST00000566078 C14orf132Q9NPU4 83 aa18.36■□□□□ 0.53
CTCF-203ENST00000566078 F8WEM9 126 aa18.35■□□□□ 0.53
CTCF-203ENST00000566078 PLA2G1BP04054 148 aaKnown RBP18.35■□□□□ 0.53
CTCF-203ENST00000566078 SPINK6Q6UWN8 80 aa18.34■□□□□ 0.53
CTCF-203ENST00000566078 ANAPC11Q9NYG5 84 aa18.34■□□□□ 0.53
CTCF-203ENST00000566078 Q5VSD8 79 aa18.31■□□□□ 0.52
CTCF-203ENST00000566078 PKHD1L1Q86WI1 4243 aa18.31■□□□□ 0.52
CTCF-203ENST00000566078 DSCR8Q96T75 97 aa18.28■□□□□ 0.52
CTCF-203ENST00000566078 IGLV9-49A0A0B4J1Y8 123 aa18.25■□□□□ 0.51
CTCF-203ENST00000566078 TRBV7-4A0A0J9YYF1 115 aa18.23■□□□□ 0.51
CTCF-203ENST00000566078 LOC110117498A0A087WWA1 95 aa18.22■□□□□ 0.51
CTCF-203ENST00000566078 IGLV8-61A0A075B6I0 122 aa18.21■□□□□ 0.51
CTCF-203ENST00000566078 KRTAP1-4P0C5Y4 121 aa18.21■□□□□ 0.51
CTCF-203ENST00000566078 C9orf153Q5TBE3 101 aa18.21■□□□□ 0.51
CTCF-203ENST00000566078 Q6ZQT0 140 aa18.2■□□□□ 0.5
CTCF-203ENST00000566078 KRTAP17-1Q9BYP8 105 aa18.2■□□□□ 0.5
CTCF-203ENST00000566078 FAM229BQ4G0N7 80 aa18.17■□□□□ 0.5
CTCF-203ENST00000566078 Q8N1X5 172 aa18.17■□□□□ 0.5
CTCF-203ENST00000566078 J3QR89 54 aa18.16■□□□□ 0.5
CTCF-203ENST00000566078 PDE6GP18545 87 aa18.16■□□□□ 0.5
CTCF-203ENST00000566078 MOBPQ13875 183 aa18.16■□□□□ 0.5
CTCF-203ENST00000566078 IGFL1Q6UW32 110 aa18.15■□□□□ 0.5
CTCF-203ENST00000566078 CCKP06307 115 aa18.14■□□□□ 0.49
CTCF-203ENST00000566078 BIRC6Q9NR09 4857 aa18.14■□□□□ 0.49
CTCF-203ENST00000566078 A0A087X002 238 aa18.13■□□□□ 0.49
CTCF-203ENST00000566078 Q8NBF4 154 aa18.13■□□□□ 0.49
CTCF-203ENST00000566078 A0A0G2JQZ4 141 aa18.12■□□□□ 0.49
CTCF-203ENST00000566078 K7ERU9 68 aa18.12■□□□□ 0.49
CTCF-203ENST00000566078 Q6JHZ5 121 aa18.12■□□□□ 0.49
CTCF-203ENST00000566078 VPS25Q9BRG1 176 aa18.12■□□□□ 0.49
CTCF-203ENST00000566078 CRYGAP11844 174 aa18.09■□□□□ 0.49
CTCF-203ENST00000566078 KRTAP13-2Q52LG2 175 aa18.07■□□□□ 0.48
CTCF-203ENST00000566078 A0A1W2PNM2 257 aa18.05■□□□□ 0.48
CTCF-203ENST00000566078 C21orf62-AS1Q17RA5 79 aa18.05■□□□□ 0.48
CTCF-203ENST00000566078 FAM240AA0A1B0GVK7 77 aa18■□□□□ 0.47
CTCF-203ENST00000566078 SSBP3-AS1Q7Z2R9 100 aa17.98■□□□□ 0.47
CTCF-203ENST00000566078 PRR26Q8N8Z3 221 aa17.97■□□□□ 0.47
CTCF-203ENST00000566078 ACYP1P07311 99 aa17.96■□□□□ 0.47
CTCF-203ENST00000566078 TYMSOSQ8TAI1 123 aa17.94■□□□□ 0.46
CTCF-203ENST00000566078 Q6Q795 121 aa17.91■□□□□ 0.46
CTCF-203ENST00000566078 HRCT1Q6UXD1 115 aa17.91■□□□□ 0.46
CTCF-203ENST00000566078 LINC00846Q9NV44 126 aa17.9■□□□□ 0.46
CTCF-203ENST00000566078 A0A1B0GW54 56 aa17.87■□□□□ 0.45
CTCF-203ENST00000566078 A0A087WSZ3 146 aa17.83■□□□□ 0.45
CTCF-203ENST00000566078 TRBV7-7A0A0K0K1E9 115 aa17.83■□□□□ 0.45
CTCF-203ENST00000566078 HERC2O95714 4834 aa17.83■□□□□ 0.44
CTCF-203ENST00000566078 KRTAP4-5Q9BYR2 181 aa17.82■□□□□ 0.44
CTCF-203ENST00000566078 CD164Q04900 197 aa17.8■□□□□ 0.44
CTCF-203ENST00000566078 CDIP1Q9H305 208 aa17.8■□□□□ 0.44
CTCF-203ENST00000566078 FAT3Q8TDW7 4589 aa17.8■□□□□ 0.44
CTCF-203ENST00000566078 LRP1Q07954 4544 aaKnown RBP17.79■□□□□ 0.44
CTCF-203ENST00000566078 UBL5Q9BZL1 73 aa17.78■□□□□ 0.44
CTCF-203ENST00000566078 FLG2Q5D862 2391 aaPredicted RBP17.76■□□□□ 0.43
CTCF-203ENST00000566078 Q6ZVQ6 151 aa17.75■□□□□ 0.43
CTCF-203ENST00000566078 LINC00304Q8N9R0 145 aa17.73■□□□□ 0.43
CTCF-203ENST00000566078 C4orf48Q5BLP8 95 aa17.72■□□□□ 0.43
CTCF-203ENST00000566078 NREPQ16612 68 aa17.72■□□□□ 0.43
CTCF-203ENST00000566078 TNXBP22105 4242 aa17.69■□□□□ 0.42
CTCF-203ENST00000566078 SS18L2Q9UHA2 77 aa17.68■□□□□ 0.42
CTCF-203ENST00000566078 MYCBP2O75592 4640 aa17.67■□□□□ 0.42
CTCF-203ENST00000566078 KRTAP10-8P60410 259 aa17.65■□□□□ 0.42
CTCF-203ENST00000566078 ABCA13Q86UQ4 5058 aa17.65■□□□□ 0.42
CTCF-203ENST00000566078 LINC00643Q86TS7 51 aa17.64■□□□□ 0.41
CTCF-203ENST00000566078 SPINK1P00995 79 aa17.62■□□□□ 0.41
CTCF-203ENST00000566078 SPAG11AQ6PDA7 123 aa17.62■□□□□ 0.41
CTCF-203ENST00000566078 LIMD2Q9BT23 127 aa17.58■□□□□ 0.41
CTCF-203ENST00000566078 IGKV3D-7A0A0C4DH55 119 aa17.54■□□□□ 0.4
CTCF-203ENST00000566078 OXTP01178 125 aa17.54■□□□□ 0.4
CTCF-203ENST00000566078 DEFB116Q30KQ4 102 aa17.54■□□□□ 0.4
CTCF-203ENST00000566078 Q5XG85 94 aa17.54■□□□□ 0.4
CTCF-203ENST00000566078 LINC00472Q9H8W2 130 aa17.54■□□□□ 0.4
CTCF-203ENST00000566078 BPY2O14599 106 aa17.53■□□□□ 0.4
CTCF-203ENST00000566078 RPS29P62273 56 aaKnown RBP17.53■□□□□ 0.4
CTCF-203ENST00000566078 MT1HL1P0DM35 61 aa17.52■□□□□ 0.4
CTCF-203ENST00000566078 ATP5EP2Q5VTU8 51 aa17.52■□□□□ 0.4
CTCF-203ENST00000566078 Q96NJ1 140 aa17.52■□□□□ 0.4
CTCF-203ENST00000566078 MT-ATP8P03928 68 aa17.51■□□□□ 0.39
CTCF-203ENST00000566078 ASB16-AS1Q495Z4 193 aa17.5■□□□□ 0.39
CTCF-203ENST00000566078 SIGMAR1Q99720 223 aa17.5■□□□□ 0.39
CTCF-203ENST00000566078 CXCL6P80162 114 aa17.47■□□□□ 0.39
CTCF-203ENST00000566078 KRTAP29-1A8MX34 341 aaPredicted RBP17.42■□□□□ 0.38
CTCF-203ENST00000566078 IGKV4-1P06312 121 aa17.42■□□□□ 0.38
CTCF-203ENST00000566078 J3KT08 172 aa17.4■□□□□ 0.38
CTCF-203ENST00000566078 C1orf195Q5TG92 126 aa17.4■□□□□ 0.38
CTCF-203ENST00000566078 DSCR10P59022 87 aa17.39■□□□□ 0.38
CTCF-203ENST00000566078 Q8N9L7 120 aa17.36■□□□□ 0.37
CTCF-203ENST00000566078 HIST1H4AP62805 103 aaKnown RBP17.32■□□□□ 0.36
CTCF-203ENST00000566078 K7EQZ3 153 aa17.32■□□□□ 0.36
CTCF-203ENST00000566078 A8MWP4 228 aa17.31■□□□□ 0.36
CTCF-203ENST00000566078 DMBT1Q9UGM3 2413 aaPredicted RBP17.3■□□□□ 0.36
CTCF-203ENST00000566078 IMUPQ9GZP8 106 aa17.27■□□□□ 0.36
CTCF-203ENST00000566078 RETNLBQ9BQ08 111 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms