RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 C12orf57Q99622 126 aa12.12□□□□□ -0.47
CLN3-215ENST00000565236 Q6JHZ5 121 aa12.11□□□□□ -0.47
CLN3-215ENST00000565236 BVES-AS1Q5T3Y7 98 aa12.1□□□□□ -0.47
CLN3-215ENST00000565236 COX8AP10176 69 aa12.09□□□□□ -0.47
CLN3-215ENST00000565236 LCE2CQ5TA81 110 aa12.09□□□□□ -0.47
CLN3-215ENST00000565236 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.09□□□□□ -0.47
CLN3-215ENST00000565236 OCIAD2Q56VL3 154 aa12.08□□□□□ -0.48
CLN3-215ENST00000565236 CLEC2BQ92478 149 aa12.07□□□□□ -0.48
CLN3-215ENST00000565236 IGFL1Q6UW32 110 aa12.06□□□□□ -0.48
CLN3-215ENST00000565236 SNHG12Q9BXW3 62 aa12.05□□□□□ -0.48
CLN3-215ENST00000565236 DLEU1O43261 78 aa12.04□□□□□ -0.48
CLN3-215ENST00000565236 RPL37P61927 97 aaKnown RBP12.04□□□□□ -0.48
CLN3-215ENST00000565236 KRTAP19-2Q3LHN2 52 aa12.04□□□□□ -0.48
CLN3-215ENST00000565236 PPDPFLQ8WWR9 84 aa12.04□□□□□ -0.48
CLN3-215ENST00000565236 TRBV7-7A0A0K0K1E9 115 aa12.03□□□□□ -0.48
CLN3-215ENST00000565236 C14orf144Q96I85 54 aa12□□□□□ -0.49
CLN3-215ENST00000565236 KRTAP9-6A0A140TA67 174 aa11.99□□□□□ -0.49
CLN3-215ENST00000565236 CFC1BP0CG36 223 aa11.99□□□□□ -0.49
CLN3-215ENST00000565236 CFC1P0CG37 223 aa11.99□□□□□ -0.49
CLN3-215ENST00000565236 RAB37Q96AX2 223 aa11.99□□□□□ -0.49
CLN3-215ENST00000565236 SNCGO76070 127 aa11.98□□□□□ -0.49
CLN3-215ENST00000565236 MT1HP80294 61 aa11.96□□□□□ -0.49
CLN3-215ENST00000565236 HIGD1BQ9P298 99 aa11.96□□□□□ -0.49
CLN3-215ENST00000565236 PAM16Q9Y3D7 125 aa11.96□□□□□ -0.49
CLN3-215ENST00000565236 H3BUT2 72 aa11.95□□□□□ -0.5
CLN3-215ENST00000565236 SPATA45Q537H7 98 aa11.95□□□□□ -0.5
CLN3-215ENST00000565236 H0YGX0 51 aa11.94□□□□□ -0.5
CLN3-215ENST00000565236 LCE2DQ5TA82 110 aaPredicted RBP11.94□□□□□ -0.5
CLN3-215ENST00000565236 A0A0B4J2C4 111 aa11.92□□□□□ -0.5
CLN3-215ENST00000565236 LST1O00453 97 aa11.91□□□□□ -0.5
CLN3-215ENST00000565236 VAMP8Q9BV40 100 aa11.91□□□□□ -0.5
CLN3-215ENST00000565236 OBSCN-AS1Q96MR7 158 aa11.89□□□□□ -0.51
CLN3-215ENST00000565236 C2orf91Q6ZV80 131 aa11.88□□□□□ -0.51
CLN3-215ENST00000565236 NDUFV3P56181 108 aaKnown RBP11.87□□□□□ -0.51
CLN3-215ENST00000565236 COX6B2Q6YFQ2 88 aa11.87□□□□□ -0.51
CLN3-215ENST00000565236 FAM218AQ96MZ4 157 aa11.87□□□□□ -0.51
CLN3-215ENST00000565236 CEND1Q8N111 149 aa11.86□□□□□ -0.51
CLN3-215ENST00000565236 SS18L2Q9UHA2 77 aa11.86□□□□□ -0.51
CLN3-215ENST00000565236 Q6Q795 121 aa11.85□□□□□ -0.51
CLN3-215ENST00000565236 ATP11AUNQ6ZP68 121 aa11.84□□□□□ -0.51
CLN3-215ENST00000565236 TEN1Q86WV5 123 aa11.84□□□□□ -0.51
CLN3-215ENST00000565236 PRO1854Q9UHT4 67 aa11.84□□□□□ -0.51
CLN3-215ENST00000565236 TMEM238LA0A1B0GVL6 79 aa11.83□□□□□ -0.52
CLN3-215ENST00000565236 A6NJY4 79 aa11.83□□□□□ -0.52
CLN3-215ENST00000565236 GHRHP01286 108 aa11.83□□□□□ -0.52
CLN3-215ENST00000565236 Q75L30 129 aa11.82□□□□□ -0.52
CLN3-215ENST00000565236 A0A1B0GX51 115 aa11.81□□□□□ -0.52
CLN3-215ENST00000565236 M0R2T5 61 aa11.81□□□□□ -0.52
CLN3-215ENST00000565236 H3BMG7 143 aa11.8□□□□□ -0.52
CLN3-215ENST00000565236 FABP2P12104 132 aa11.8□□□□□ -0.52
CLN3-215ENST00000565236 Q96NJ1 140 aa11.79□□□□□ -0.52
CLN3-215ENST00000565236 FXYD2P54710 66 aa11.77□□□□□ -0.53
CLN3-215ENST00000565236 A0A087WSZ3 146 aa11.76□□□□□ -0.53
CLN3-215ENST00000565236 KRTAP10-6P60371 365 aaPredicted RBP11.75□□□□□ -0.53
CLN3-215ENST00000565236 LORP23490 312 aaPredicted RBP11.74□□□□□ -0.53
CLN3-215ENST00000565236 TRIAP1O43715 76 aa11.73□□□□□ -0.53
CLN3-215ENST00000565236 FLGP20930 4061 aaPredicted RBP11.71□□□□□ -0.54
CLN3-215ENST00000565236 FSIP2Q5CZC0 6907 aa11.7□□□□□ -0.54
CLN3-215ENST00000565236 CRCT1Q9UGL9 99 aa11.69□□□□□ -0.54
CLN3-215ENST00000565236 DNAL4O96015 105 aa11.68□□□□□ -0.54
CLN3-215ENST00000565236 C20orf166-AS1Q96NR2 134 aa11.68□□□□□ -0.54
CLN3-215ENST00000565236 A0A1W2PNM2 257 aa11.67□□□□□ -0.54
CLN3-215ENST00000565236 PSMB2P49721 201 aa11.67□□□□□ -0.54
CLN3-215ENST00000565236 HSD52Q0P140 79 aa11.66□□□□□ -0.54
CLN3-215ENST00000565236 ORMDL1Q9P0S3 153 aa11.66□□□□□ -0.54
CLN3-215ENST00000565236 A8MUU9 505 aa11.65□□□□□ -0.54
CLN3-215ENST00000565236 ANKRD29Q8N6D5 301 aa11.65□□□□□ -0.54
CLN3-215ENST00000565236 H3BQ85 93 aa11.64□□□□□ -0.55
CLN3-215ENST00000565236 PYY3Q5JQD4 70 aa11.64□□□□□ -0.55
CLN3-215ENST00000565236 COX6CP09669 75 aa11.63□□□□□ -0.55
CLN3-215ENST00000565236 SIGMAR1Q99720 223 aa11.63□□□□□ -0.55
CLN3-215ENST00000565236 K7ERJ3 54 aa11.62□□□□□ -0.55
CLN3-215ENST00000565236 A0A1B0GV72 72 aa11.61□□□□□ -0.55
CLN3-215ENST00000565236 DSCR10P59022 87 aa11.61□□□□□ -0.55
CLN3-215ENST00000565236 TRBV7-4A0A0J9YYF1 115 aa11.6□□□□□ -0.55
CLN3-215ENST00000565236 TMEM256-PLSCR3K7ERE1 68 aa11.6□□□□□ -0.55
CLN3-215ENST00000565236 IGKV4-1P06312 121 aa11.57□□□□□ -0.56
CLN3-215ENST00000565236 LINC00313P59037 77 aa11.56□□□□□ -0.56
CLN3-215ENST00000565236 TRBV20-1A0A075B6N2 111 aa11.54□□□□□ -0.56
CLN3-215ENST00000565236 UQCR10Q9UDW1 63 aa11.54□□□□□ -0.56
CLN3-215ENST00000565236 CCKP06307 115 aa11.52□□□□□ -0.57
CLN3-215ENST00000565236 TRACP01848 142 aa11.51□□□□□ -0.57
CLN3-215ENST00000565236 UBE2V1Q13404 147 aa11.51□□□□□ -0.57
CLN3-215ENST00000565236 DEFB116Q30KQ4 102 aa11.5□□□□□ -0.57
CLN3-215ENST00000565236 SCGB1C2P0DMR2 95 aa11.49□□□□□ -0.57
CLN3-215ENST00000565236 LINC00472Q9H8W2 130 aa11.48□□□□□ -0.57
CLN3-215ENST00000565236 TMA7Q9Y2S6 64 aaKnown RBP11.46□□□□□ -0.57
CLN3-215ENST00000565236 KRTAP16-1A8MUX0 517 aa11.45□□□□□ -0.58
CLN3-215ENST00000565236 NOTCH2NLQ7Z3S9 236 aa11.44□□□□□ -0.58
CLN3-215ENST00000565236 VPS25Q9BRG1 176 aa11.44□□□□□ -0.58
CLN3-215ENST00000565236 IGHV6-1A0A0B4J1U7 121 aa11.43□□□□□ -0.58
CLN3-215ENST00000565236 RBM3P98179 157 aaKnown RBP11.43□□□□□ -0.58
CLN3-215ENST00000565236 DSCR8Q96T75 97 aa11.41□□□□□ -0.58
CLN3-215ENST00000565236 BAALC-AS2P0C853 105 aa11.37□□□□□ -0.59
CLN3-215ENST00000565236 FAM236DA0A1B0GTK5 79 aa11.36□□□□□ -0.59
CLN3-215ENST00000565236 FAM236CP0DP71 79 aa11.36□□□□□ -0.59
CLN3-215ENST00000565236 A0A1B0GVX0 72 aa11.33□□□□□ -0.6
CLN3-215ENST00000565236 C9JAW5 83 aa11.33□□□□□ -0.6
CLN3-215ENST00000565236 C8orf87E5RJ46 101 aa11.33□□□□□ -0.6
CLN3-215ENST00000565236 C21orf62-AS1Q17RA5 79 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms