RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 FAM30AQ9NZY2 134 aa8.58□□□□□ -1.04
CLK3-215ENST00000564353 MDFIQ99750 246 aa8.57□□□□□ -1.04
CLK3-215ENST00000564353 A8MU10 97 aa8.57□□□□□ -1.04
CLK3-215ENST00000564353 IGLV5-48A0A075B6I7 105 aa8.56□□□□□ -1.04
CLK3-215ENST00000564353 PRYO14603 147 aa8.56□□□□□ -1.04
CLK3-215ENST00000564353 REG3GQ6UW15 175 aa8.56□□□□□ -1.04
CLK3-215ENST00000564353 UBE2DNLQ8IWF7 75 aa8.56□□□□□ -1.04
CLK3-215ENST00000564353 ATP5EP56381 51 aaPredicted RBP8.56□□□□□ -1.04
CLK3-215ENST00000564353 NDUFC1O43677 76 aa8.55□□□□□ -1.04
CLK3-215ENST00000564353 SMIM29Q86T20 159 aa8.55□□□□□ -1.04
CLK3-215ENST00000564353 SPRR1AP35321 89 aa8.54□□□□□ -1.04
CLK3-215ENST00000564353 KRTAP11-1Q8IUC1 163 aa8.54□□□□□ -1.04
CLK3-215ENST00000564353 PHF5AQ7RTV0 110 aaKnown RBP8.53□□□□□ -1.04
CLK3-215ENST00000564353 TMEM254Q8TBM7 123 aa8.53□□□□□ -1.04
CLK3-215ENST00000564353 LINC00476Q8WZB0 136 aa8.52□□□□□ -1.05
CLK3-215ENST00000564353 PLA2G2DQ9UNK4 145 aa8.52□□□□□ -1.05
CLK3-215ENST00000564353 K7EQZ3 153 aa8.52□□□□□ -1.05
CLK3-215ENST00000564353 TNP2Q05952 138 aa8.51□□□□□ -1.05
CLK3-215ENST00000564353 Q8NBF4 154 aa8.51□□□□□ -1.05
CLK3-215ENST00000564353 IGLV5-37A0A075B6J1 123 aa8.5□□□□□ -1.05
CLK3-215ENST00000564353 PLECQ15149 4684 aaKnown RBP8.49□□□□□ -1.05
CLK3-215ENST00000564353 H3BS24 57 aa8.48□□□□□ -1.05
CLK3-215ENST00000564353 RPL37AP61513 92 aaKnown RBP8.48□□□□□ -1.05
CLK3-215ENST00000564353 OCR1Q9BZK8 76 aa8.48□□□□□ -1.05
CLK3-215ENST00000564353 BCE1O60756 84 aa8.48□□□□□ -1.05
CLK3-215ENST00000564353 DSCR10P59022 87 aa8.48□□□□□ -1.05
CLK3-215ENST00000564353 IGFL1Q6UW32 110 aa8.48□□□□□ -1.05
CLK3-215ENST00000564353 A0A087WSZ3 146 aa8.47□□□□□ -1.05
CLK3-215ENST00000564353 C16orf90A8MZG2 172 aa8.46□□□□□ -1.06
CLK3-215ENST00000564353 PANO1I0J062 215 aa8.46□□□□□ -1.06
CLK3-215ENST00000564353 KTN1-AS1Q86SY8 53 aa8.45□□□□□ -1.06
CLK3-215ENST00000564353 WFDC13Q8IUB5 93 aa8.45□□□□□ -1.06
CLK3-215ENST00000564353 UBE2AP49459 152 aa8.44□□□□□ -1.06
CLK3-215ENST00000564353 SPTSSBQ8NFR3 76 aa8.44□□□□□ -1.06
CLK3-215ENST00000564353 PRR4Q16378 134 aa8.43□□□□□ -1.06
CLK3-215ENST00000564353 SPRR4Q96PI1 79 aa8.42□□□□□ -1.06
CLK3-215ENST00000564353 APLNQ9ULZ1 77 aa8.42□□□□□ -1.06
CLK3-215ENST00000564353 TRAV22A0A0B4J277 110 aa8.41□□□□□ -1.06
CLK3-215ENST00000564353 DNHD1Q96M86 4753 aa8.41□□□□□ -1.06
CLK3-215ENST00000564353 A8MUN3 132 aa8.4□□□□□ -1.06
CLK3-215ENST00000564353 hDV103S1A0JD37 113 aa8.39□□□□□ -1.07
CLK3-215ENST00000564353 Q1T7F1 81 aa8.39□□□□□ -1.07
CLK3-215ENST00000564353 CNBPP62633 177 aaKnown RBP8.39□□□□□ -1.07
CLK3-215ENST00000564353 PRKDCP78527 4128 aaKnown RBP8.38□□□□□ -1.07
CLK3-215ENST00000564353 STARD9Q9P2P6 4700 aa8.38□□□□□ -1.07
CLK3-215ENST00000564353 C1orf64Q8NEQ6 169 aa8.37□□□□□ -1.07
CLK3-215ENST00000564353 FRAS1Q86XX4 4008 aa8.36□□□□□ -1.07
CLK3-215ENST00000564353 MEGF8Q7Z7M0 2845 aa8.36□□□□□ -1.07
CLK3-215ENST00000564353 HCG22E2RYF7 251 aa8.35□□□□□ -1.07
CLK3-215ENST00000564353 C8orf87E5RJ46 101 aa8.35□□□□□ -1.07
CLK3-215ENST00000564353 IGLV9-49A0A0B4J1Y8 123 aa8.34□□□□□ -1.07
CLK3-215ENST00000564353 KMT2AQ03164 3969 aa8.34□□□□□ -1.07
CLK3-215ENST00000564353 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.34□□□□□ -1.07
CLK3-215ENST00000564353 NBDYA0A0U1RRE5 68 aa8.33□□□□□ -1.08
CLK3-215ENST00000564353 ANAPC11Q9NYG5 84 aa8.32□□□□□ -1.08
CLK3-215ENST00000564353 TGP01266 2768 aa8.32□□□□□ -1.08
CLK3-215ENST00000564353 C9orf163Q8N9P6 203 aa8.32□□□□□ -1.08
CLK3-215ENST00000564353 CHKB-CPT1BH3BT56 60 aa8.3□□□□□ -1.08
CLK3-215ENST00000564353 B9D2Q9BPU9 175 aa8.29□□□□□ -1.08
CLK3-215ENST00000564353 H0Y9J4 135 aa8.29□□□□□ -1.08
CLK3-215ENST00000564353 DYNC2H1Q8NCM8 4307 aaKnown RBP8.28□□□□□ -1.08
CLK3-215ENST00000564353 A0A1B0GW54 56 aa8.28□□□□□ -1.08
CLK3-215ENST00000564353 C14orf177Q52M58 125 aa8.28□□□□□ -1.08
CLK3-215ENST00000564353 Q5VV11 94 aa8.28□□□□□ -1.08
CLK3-215ENST00000564353 Q6ZRN7 208 aaPredicted RBP8.25□□□□□ -1.09
CLK3-215ENST00000564353 LINC00208Q96KT6 92 aa8.25□□□□□ -1.09
CLK3-215ENST00000564353 NDUFS5O43920 106 aa8.25□□□□□ -1.09
CLK3-215ENST00000564353 DNAH2Q9P225 4427 aa8.24□□□□□ -1.09
CLK3-215ENST00000564353 IGLV8-61A0A075B6I0 122 aa8.24□□□□□ -1.09
CLK3-215ENST00000564353 CASC2Q6XLA1 102 aa8.24□□□□□ -1.09
CLK3-215ENST00000564353 HECTD4Q9Y4D8 3996 aa8.21□□□□□ -1.09
CLK3-215ENST00000564353 A6NN06 94 aa8.21□□□□□ -1.1
CLK3-215ENST00000564353 LCA10Q71F78 164 aa8.21□□□□□ -1.1
CLK3-215ENST00000564353 ZCCHC13Q8WW36 166 aaKnown RBP8.21□□□□□ -1.1
CLK3-215ENST00000564353 VPS13DQ5THJ4 4388 aa8.2□□□□□ -1.1
CLK3-215ENST00000564353 LCE6AA0A183 80 aa8.2□□□□□ -1.1
CLK3-215ENST00000564353 LINC00472Q9H8W2 130 aa8.2□□□□□ -1.1
CLK3-215ENST00000564353 NUPR2A6NF83 97 aa8.2□□□□□ -1.1
CLK3-215ENST00000564353 PRR15LQ9BU68 103 aa8.19□□□□□ -1.1
CLK3-215ENST00000564353 A0A087WTM6 91 aa8.19□□□□□ -1.1
CLK3-215ENST00000564353 SPACA4Q8TDM5 124 aa8.19□□□□□ -1.1
CLK3-215ENST00000564353 FBN3Q75N90 2809 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 DNAH8Q96JB1 4490 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 KRTAP29-1A8MX34 341 aaPredicted RBP8.18□□□□□ -1.1
CLK3-215ENST00000564353 H0Y9P7 68 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 MP68P56378 58 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 ATP11AUNQ6ZP68 121 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 C7orf65Q6ZTY9 151 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 PRR26Q8N8Z3 221 aa8.18□□□□□ -1.1
CLK3-215ENST00000564353 A6NED7 52 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 A8MWP4 228 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 SPRR1BP22528 89 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 PSORS1C2Q9UIG4 136 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 RTL8CO15255 209 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 MOBPQ13875 183 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 KRTAP13-1Q8IUC0 172 aa8.17□□□□□ -1.1
CLK3-215ENST00000564353 DNAH17Q9UFH2 4485 aa8.16□□□□□ -1.1
CLK3-215ENST00000564353 DNAH6Q9C0G6 4158 aa8.14□□□□□ -1.11
CLK3-215ENST00000564353 IGHV6-1A0A0B4J1U7 121 aa8.13□□□□□ -1.11
CLK3-215ENST00000564353 PCOTHQ58A44 107 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms