RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 AKAP13Q12802 2813 aa2.87□□□□□ -1.95
VPS35-205ENST00000563984 WDFY3Q8IZQ1 3526 aa2.87□□□□□ -1.95
VPS35-205ENST00000563984 ANKRD17O75179 2603 aaKnown RBP2.87□□□□□ -1.95
VPS35-205ENST00000563984 A0A0G2JQZ4 141 aa2.87□□□□□ -1.95
VPS35-205ENST00000563984 LINC00304Q8N9R0 145 aa2.87□□□□□ -1.95
VPS35-205ENST00000563984 MYO9AB2RTY4 2548 aa2.87□□□□□ -1.95
VPS35-205ENST00000563984 LOC400499M0QZD8 3231 aa2.86□□□□□ -1.95
VPS35-205ENST00000563984 ANGP03950 147 aaKnown RBP2.86□□□□□ -1.95
VPS35-205ENST00000563984 LY6EQ16553 131 aa2.86□□□□□ -1.95
VPS35-205ENST00000563984 LEAP2Q969E1 77 aa2.86□□□□□ -1.95
VPS35-205ENST00000563984 ABCA4P78363 2273 aa2.85□□□□□ -1.95
VPS35-205ENST00000563984 SPTY2D1-AS1A0A0U1RR47 76 aa2.85□□□□□ -1.95
VPS35-205ENST00000563984 IGLV6-57P01721 117 aa2.85□□□□□ -1.95
VPS35-205ENST00000563984 SSBP3-AS1Q7Z2R9 100 aa2.85□□□□□ -1.95
VPS35-205ENST00000563984 SPTAN1Q13813 2472 aaKnown RBP2.85□□□□□ -1.95
VPS35-205ENST00000563984 ITPR3Q14573 2671 aa2.85□□□□□ -1.95
VPS35-205ENST00000563984 UNC13CQ8NB66 2214 aa2.84□□□□□ -1.95
VPS35-205ENST00000563984 A0A096LNT2 108 aa2.84□□□□□ -1.95
VPS35-205ENST00000563984 LY6G6CO95867 125 aa2.84□□□□□ -1.95
VPS35-205ENST00000563984 TMEM167AQ8TBQ9 72 aa2.84□□□□□ -1.95
VPS35-205ENST00000563984 TP53AIP1Q9HCN2 124 aa2.84□□□□□ -1.95
VPS35-205ENST00000563984 CCL26Q9Y258 94 aa2.84□□□□□ -1.95
VPS35-205ENST00000563984 FREM2Q5SZK8 3169 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 UBR5O95071 2799 aaPredicted RBP2.83□□□□□ -1.96
VPS35-205ENST00000563984 ACACAQ13085 2346 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 PTPRQQ9UMZ3 2332 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 KALRNO60229 2985 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 CFAP46Q8IYW2 2715 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 RP1P56715 2156 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 CACNA1CQ13936 2221 aa2.83□□□□□ -1.96
VPS35-205ENST00000563984 KRTAP21-3Q3LHN1 58 aa2.82□□□□□ -1.96
VPS35-205ENST00000563984 C10orf55Q5SWW7 151 aa2.82□□□□□ -1.96
VPS35-205ENST00000563984 KNTC1P50748 2209 aa2.82□□□□□ -1.96
VPS35-205ENST00000563984 COL12A1Q99715 3063 aa2.82□□□□□ -1.96
VPS35-205ENST00000563984 CELSR3Q9NYQ7 3312 aa2.81□□□□□ -1.96
VPS35-205ENST00000563984 C2CD3Q4AC94 2353 aa2.81□□□□□ -1.96
VPS35-205ENST00000563984 M0QY20 66 aa2.81□□□□□ -1.96
VPS35-205ENST00000563984 F5P12259 2224 aa2.81□□□□□ -1.96
VPS35-205ENST00000563984 APC2O95996 2303 aa2.8□□□□□ -1.96
VPS35-205ENST00000563984 DOPEY2Q9Y3R5 2298 aa2.8□□□□□ -1.96
VPS35-205ENST00000563984 I3L2K1 104 aa2.8□□□□□ -1.96
VPS35-205ENST00000563984 K7EQZ3 153 aa2.8□□□□□ -1.96
VPS35-205ENST00000563984 WT1-ASQ06250 92 aa2.8□□□□□ -1.96
VPS35-205ENST00000563984 DEFB119Q8N690 84 aa2.8□□□□□ -1.96
VPS35-205ENST00000563984 ASCC3Q8N3C0 2202 aaKnown RBP2.8□□□□□ -1.96
VPS35-205ENST00000563984 MED13LQ71F56 2210 aa2.79□□□□□ -1.96
VPS35-205ENST00000563984 LYNX1G3V0Z9 82 aa2.79□□□□□ -1.96
VPS35-205ENST00000563984 FBN2P35556 2912 aa2.79□□□□□ -1.96
VPS35-205ENST00000563984 POLQO75417 2590 aa2.79□□□□□ -1.96
VPS35-205ENST00000563984 CACNA1EQ15878 2313 aa2.79□□□□□ -1.96
VPS35-205ENST00000563984 RELNP78509 3460 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 IGLV5-48A0A075B6I7 105 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 TPRXLQ17RH7 258 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 RPL39P5Q59GN2 51 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 MINOS1Q5TGZ0 78 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 SPACA4Q8TDM5 124 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 COL6A6A6NMZ7 2263 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 LAMA1P25391 3075 aa2.78□□□□□ -1.96
VPS35-205ENST00000563984 SETD2Q9BYW2 2564 aaPredicted RBP2.78□□□□□ -1.96
VPS35-205ENST00000563984 AHCTF1Q8WYP5 2266 aa2.77□□□□□ -1.97
VPS35-205ENST00000563984 INE1O15225 51 aa2.77□□□□□ -1.97
VPS35-205ENST00000563984 Q6ZRX8 168 aa2.77□□□□□ -1.97
VPS35-205ENST00000563984 C6orf48Q9UBA6 75 aa2.77□□□□□ -1.97
VPS35-205ENST00000563984 COX6A2Q02221 97 aa2.76□□□□□ -1.97
VPS35-205ENST00000563984 DEFB134Q4QY38 66 aa2.76□□□□□ -1.97
VPS35-205ENST00000563984 PCOTHQ58A44 107 aa2.76□□□□□ -1.97
VPS35-205ENST00000563984 WFDC13Q8IUB5 93 aa2.76□□□□□ -1.97
VPS35-205ENST00000563984 FBN3Q75N90 2809 aa2.76□□□□□ -1.97
VPS35-205ENST00000563984 CADP27708 2225 aa2.75□□□□□ -1.97
VPS35-205ENST00000563984 DEFB108AA8MXU0 73 aa2.75□□□□□ -1.97
VPS35-205ENST00000563984 G3V318 75 aa2.75□□□□□ -1.97
VPS35-205ENST00000563984 WFDC10BQ8IUB3 73 aa2.75□□□□□ -1.97
VPS35-205ENST00000563984 UTP20O75691 2785 aaKnown RBP2.75□□□□□ -1.97
VPS35-205ENST00000563984 IGKV2-24A0A0C4DH68 120 aa2.74□□□□□ -1.97
VPS35-205ENST00000563984 PLAC4Q8WY50 150 aa2.74□□□□□ -1.97
VPS35-205ENST00000563984 MGAQ8IWI9 3026 aa2.74□□□□□ -1.97
VPS35-205ENST00000563984 USP9YO00507 2555 aaPredicted RBP2.73□□□□□ -1.97
VPS35-205ENST00000563984 LRRK2Q5S007 2527 aa2.73□□□□□ -1.97
VPS35-205ENST00000563984 PCNX1Q96RV3 2341 aa2.73□□□□□ -1.97
VPS35-205ENST00000563984 K7EIM0 57 aa2.73□□□□□ -1.97
VPS35-205ENST00000563984 FLNCQ14315 2725 aa2.73□□□□□ -1.97
VPS35-205ENST00000563984 ITPR2Q14571 2701 aa2.73□□□□□ -1.97
VPS35-205ENST00000563984 ATMQ13315 3056 aa2.72□□□□□ -1.97
VPS35-205ENST00000563984 NBPF19A0A087WUL8 3843 aa2.72□□□□□ -1.97
VPS35-205ENST00000563984 SORL1Q92673 2214 aa2.72□□□□□ -1.97
VPS35-205ENST00000563984 NAV3Q8IVL0 2385 aa2.72□□□□□ -1.97
VPS35-205ENST00000563984 CRIPTQ9P021 101 aa2.72□□□□□ -1.97
VPS35-205ENST00000563984 ICE1Q9Y2F5 2266 aa2.72□□□□□ -1.97
VPS35-205ENST00000563984 GVQW2A0A096LPI5 108 aaPredicted RBP2.71□□□□□ -1.98
VPS35-205ENST00000563984 TOMM7Q9P0U1 55 aa2.71□□□□□ -1.98
VPS35-205ENST00000563984 CENPEQ02224 2701 aa2.71□□□□□ -1.98
VPS35-205ENST00000563984 USF3Q68DE3 2245 aa2.7□□□□□ -1.98
VPS35-205ENST00000563984 STATHP02808 62 aa2.7□□□□□ -1.98
VPS35-205ENST00000563984 ABCA2Q9BZC7 2435 aa2.7□□□□□ -1.98
VPS35-205ENST00000563984 LRBAP50851 2863 aa2.7□□□□□ -1.98
VPS35-205ENST00000563984 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
VPS35-205ENST00000563984 COX6B2Q6YFQ2 88 aa2.69□□□□□ -1.98
VPS35-205ENST00000563984 NF1P21359 2839 aa2.69□□□□□ -1.98
VPS35-205ENST00000563984 F8P00451 2351 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 772.1 ms