RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 VPS13DQ5THJ4 4388 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 DNAH6Q9C0G6 4158 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 FAM236AA0A1B0GUQ0 79 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 FAM236BA0A1B0GV22 79 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.68□□□□□ -1.66
VPS39-204ENST00000561818 ZNF861PO60384 105 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 LINC00483Q53H64 154 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 KRTAP13-1Q8IUC0 172 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 KRTAP9-2Q9BYQ4 174 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 CSMD3Q7Z407 3707 aa4.68□□□□□ -1.66
VPS39-204ENST00000561818 TENM2Q9NT68 2774 aa4.67□□□□□ -1.66
VPS39-204ENST00000561818 J3KT08 172 aa4.67□□□□□ -1.66
VPS39-204ENST00000561818 BPY2O14599 106 aa4.67□□□□□ -1.66
VPS39-204ENST00000561818 HIST1H4AP62805 103 aaKnown RBP4.67□□□□□ -1.66
VPS39-204ENST00000561818 HAMPP81172 84 aa4.67□□□□□ -1.66
VPS39-204ENST00000561818 Q6ZSA8 131 aa4.67□□□□□ -1.66
VPS39-204ENST00000561818 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.67□□□□□ -1.66
VPS39-204ENST00000561818 ALMS1Q8TCU4 4167 aa4.65□□□□□ -1.66
VPS39-204ENST00000561818 KRTAP9-6A0A140TA67 174 aa4.65□□□□□ -1.67
VPS39-204ENST00000561818 LCE6AA0A183 80 aa4.65□□□□□ -1.67
VPS39-204ENST00000561818 UQCRQO14949 82 aa4.65□□□□□ -1.67
VPS39-204ENST00000561818 ERC2-IT1O76042 136 aa4.65□□□□□ -1.67
VPS39-204ENST00000561818 PLECQ15149 4684 aaKnown RBP4.65□□□□□ -1.67
VPS39-204ENST00000561818 SMIM29Q86T20 159 aa4.65□□□□□ -1.67
VPS39-204ENST00000561818 ST20-AS1Q8NBB2 130 aa4.65□□□□□ -1.67
VPS39-204ENST00000561818 PSORS1C2Q9UIG4 136 aa4.64□□□□□ -1.67
VPS39-204ENST00000561818 STARD9Q9P2P6 4700 aa4.63□□□□□ -1.67
VPS39-204ENST00000561818 IGKV3D-7A0A0C4DH55 119 aa4.63□□□□□ -1.67
VPS39-204ENST00000561818 IGLV7-43P04211 117 aa4.63□□□□□ -1.67
VPS39-204ENST00000561818 A0A1W2PNM2 257 aa4.62□□□□□ -1.67
VPS39-204ENST00000561818 CD164Q04900 197 aa4.62□□□□□ -1.67
VPS39-204ENST00000561818 FAM229BQ4G0N7 80 aa4.62□□□□□ -1.67
VPS39-204ENST00000561818 IGFL1Q6UW32 110 aa4.62□□□□□ -1.67
VPS39-204ENST00000561818 SERP2Q8N6R1 65 aa4.62□□□□□ -1.67
VPS39-204ENST00000561818 LYSTQ99698 3801 aa4.61□□□□□ -1.67
VPS39-204ENST00000561818 COX7CP15954 63 aa4.61□□□□□ -1.67
VPS39-204ENST00000561818 SSBP3-AS1Q7Z2R9 100 aa4.61□□□□□ -1.67
VPS39-204ENST00000561818 PANO1I0J062 215 aa4.6□□□□□ -1.67
VPS39-204ENST00000561818 NDUFB1O75438 58 aa4.6□□□□□ -1.67
VPS39-204ENST00000561818 C9orf153Q5TBE3 101 aa4.6□□□□□ -1.67
VPS39-204ENST00000561818 C3orf22Q8N5N4 141 aa4.6□□□□□ -1.67
VPS39-204ENST00000561818 TGP01266 2768 aa4.59□□□□□ -1.67
VPS39-204ENST00000561818 TRAV7A0A075B6U4 112 aa4.59□□□□□ -1.67
VPS39-204ENST00000561818 CIRBP-AS1Q8TBR5 109 aa4.59□□□□□ -1.67
VPS39-204ENST00000561818 A0A087WSZ3 146 aa4.58□□□□□ -1.68
VPS39-204ENST00000561818 NDUFC1O43677 76 aa4.58□□□□□ -1.68
VPS39-204ENST00000561818 SCXQ7RTU7 201 aa4.58□□□□□ -1.68
VPS39-204ENST00000561818 KRTAP4-12Q9BQ66 201 aa4.58□□□□□ -1.68
VPS39-204ENST00000561818 KRTAP10-2P60368 255 aa4.57□□□□□ -1.68
VPS39-204ENST00000561818 KRTAP11-1Q8IUC1 163 aa4.57□□□□□ -1.68
VPS39-204ENST00000561818 CDK2AP2O75956 126 aa4.56□□□□□ -1.68
VPS39-204ENST00000561818 DNAH10Q8IVF4 4471 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 IGLV9-49A0A0B4J1Y8 123 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 A8MWP4 228 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 IGKV4-1P06312 121 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 ASB16-AS1Q495Z4 193 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 SPINK6Q6UWN8 80 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 LIMD2Q9BT23 127 aa4.55□□□□□ -1.68
VPS39-204ENST00000561818 A0A087WVE0 104 aa4.54□□□□□ -1.68
VPS39-204ENST00000561818 HCG22E2RYF7 251 aa4.54□□□□□ -1.68
VPS39-204ENST00000561818 MOBPQ13875 183 aa4.54□□□□□ -1.68
VPS39-204ENST00000561818 Q5XG85 94 aa4.54□□□□□ -1.68
VPS39-204ENST00000561818 KMT2AQ03164 3969 aa4.54□□□□□ -1.68
VPS39-204ENST00000561818 KRTAP10-1P60331 282 aa4.53□□□□□ -1.68
VPS39-204ENST00000561818 HECTD4Q9Y4D8 3996 aa4.53□□□□□ -1.68
VPS39-204ENST00000561818 H3BPC8 53 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 ATP5EP56381 51 aaPredicted RBP4.52□□□□□ -1.69
VPS39-204ENST00000561818 TMEM258P61165 79 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 RPS29P62273 56 aaKnown RBP4.52□□□□□ -1.69
VPS39-204ENST00000561818 SPAG11AQ6PDA7 123 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 PRR15Q8IV56 129 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 LINC00472Q9H8W2 130 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 DNAH17Q9UFH2 4485 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 DNAH2Q9P225 4427 aa4.52□□□□□ -1.69
VPS39-204ENST00000561818 DSCR10P59022 87 aa4.51□□□□□ -1.69
VPS39-204ENST00000561818 KLKP1Q107X0 134 aa4.51□□□□□ -1.69
VPS39-204ENST00000561818 C5orf47Q569G3 176 aa4.51□□□□□ -1.69
VPS39-204ENST00000561818 KRTAP19-1Q8IUB9 90 aa4.51□□□□□ -1.69
VPS39-204ENST00000561818 TP53AIP1Q9HCN2 124 aa4.51□□□□□ -1.69
VPS39-204ENST00000561818 FAM30AQ9NZY2 134 aa4.51□□□□□ -1.69
VPS39-204ENST00000561818 LCE3BQ5TA77 95 aa4.5□□□□□ -1.69
VPS39-204ENST00000561818 C8orf87E5RJ46 101 aa4.49□□□□□ -1.69
VPS39-204ENST00000561818 K7EQZ3 153 aa4.49□□□□□ -1.69
VPS39-204ENST00000561818 SPINK1P00995 79 aa4.49□□□□□ -1.69
VPS39-204ENST00000561818 PLA2G1BP04054 148 aaKnown RBP4.49□□□□□ -1.69
VPS39-204ENST00000561818 A0A1B0GVY2 172 aa4.48□□□□□ -1.69
VPS39-204ENST00000561818 CCDC179H3BU77 68 aa4.48□□□□□ -1.69
VPS39-204ENST00000561818 MP68P56378 58 aa4.48□□□□□ -1.69
VPS39-204ENST00000561818 CASC2Q6XLA1 102 aa4.48□□□□□ -1.69
VPS39-204ENST00000561818 FRAS1Q86XX4 4008 aa4.48□□□□□ -1.69
VPS39-204ENST00000561818 OCR1Q9BZK8 76 aa4.47□□□□□ -1.69
VPS39-204ENST00000561818 A0A1B0GVX0 72 aa4.46□□□□□ -1.7
VPS39-204ENST00000561818 RPS28P62857 69 aaKnown RBP4.46□□□□□ -1.7
VPS39-204ENST00000561818 TMEM254Q8TBM7 123 aa4.46□□□□□ -1.7
VPS39-204ENST00000561818 hDV103S1A0JD37 113 aa4.45□□□□□ -1.7
VPS39-204ENST00000561818 C20orf197Q8N268 126 aa4.45□□□□□ -1.7
VPS39-204ENST00000561818 Q8N9L7 120 aa4.45□□□□□ -1.7
VPS39-204ENST00000561818 TYMSOSQ8TAI1 123 aa4.45□□□□□ -1.7
VPS39-204ENST00000561818 KRTAP9-9Q9BYP9 154 aa4.45□□□□□ -1.7
VPS39-204ENST00000561818 KRTAP9-4Q9BYQ2 154 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms