RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SCGB1D4Q6XE38 83 aa8.46□□□□□ -1.06
CLN3-208ENST00000561505 TRAV13-2A0A0B4J235 113 aa8.45□□□□□ -1.06
CLN3-208ENST00000561505 ATP11AUNQ6ZP68 121 aa8.45□□□□□ -1.06
CLN3-208ENST00000561505 ANKRD39Q53RE8 183 aa8.44□□□□□ -1.06
CLN3-208ENST00000561505 LINC00575Q6W349 94 aa8.44□□□□□ -1.06
CLN3-208ENST00000561505 IGFL1Q6UW32 110 aa8.43□□□□□ -1.06
CLN3-208ENST00000561505 CLEC2BQ92478 149 aa8.43□□□□□ -1.06
CLN3-208ENST00000561505 COA6Q5JTJ3 125 aaKnown RBP8.42□□□□□ -1.06
CLN3-208ENST00000561505 OBSCN-AS1Q96MR7 158 aa8.42□□□□□ -1.06
CLN3-208ENST00000561505 F8WEM9 126 aa8.41□□□□□ -1.06
CLN3-208ENST00000561505 PCP2Q8IVA1 136 aa8.41□□□□□ -1.06
CLN3-208ENST00000561505 OCIAD2Q56VL3 154 aa8.4□□□□□ -1.06
CLN3-208ENST00000561505 Q6Q795 121 aa8.39□□□□□ -1.07
CLN3-208ENST00000561505 Q6ZQY7 126 aa8.38□□□□□ -1.07
CLN3-208ENST00000561505 C20orf166-AS1Q96NR2 134 aa8.38□□□□□ -1.07
CLN3-208ENST00000561505 hADV29S1A0JD25 119 aa8.37□□□□□ -1.07
CLN3-208ENST00000561505 C20orf202A1L168 122 aa8.37□□□□□ -1.07
CLN3-208ENST00000561505 VAMP3Q15836 100 aa8.37□□□□□ -1.07
CLN3-208ENST00000561505 A8MUU9 505 aa8.36□□□□□ -1.07
CLN3-208ENST00000561505 PPDPFLQ8WWR9 84 aa8.36□□□□□ -1.07
CLN3-208ENST00000561505 KRTDAPP60985 99 aa8.35□□□□□ -1.07
CLN3-208ENST00000561505 SLC7A5P1Q8MH63 180 aa8.35□□□□□ -1.07
CLN3-208ENST00000561505 FCGBPQ9Y6R7 5405 aaPredicted RBP8.35□□□□□ -1.07
CLN3-208ENST00000561505 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.33□□□□□ -1.08
CLN3-208ENST00000561505 LST1O00453 97 aa8.32□□□□□ -1.08
CLN3-208ENST00000561505 Q96NJ1 140 aa8.32□□□□□ -1.08
CLN3-208ENST00000561505 MT2AP02795 61 aa8.31□□□□□ -1.08
CLN3-208ENST00000561505 SNRPEP62304 92 aaKnown RBP8.31□□□□□ -1.08
CLN3-208ENST00000561505 ATOH7Q8N100 152 aa8.3□□□□□ -1.08
CLN3-208ENST00000561505 SCGB1D1O95968 90 aa8.28□□□□□ -1.08
CLN3-208ENST00000561505 LCE2BO14633 110 aa8.27□□□□□ -1.09
CLN3-208ENST00000561505 TRBV20-1A0A075B6N2 111 aa8.26□□□□□ -1.09
CLN3-208ENST00000561505 KRTAP9-3Q9BYQ3 159 aa8.26□□□□□ -1.09
CLN3-208ENST00000561505 SS18L2Q9UHA2 77 aa8.26□□□□□ -1.09
CLN3-208ENST00000561505 KRTAP19-1Q8IUB9 90 aa8.25□□□□□ -1.09
CLN3-208ENST00000561505 MPLKIPQ8TAP9 179 aa8.25□□□□□ -1.09
CLN3-208ENST00000561505 KRTAP16-1A8MUX0 517 aa8.24□□□□□ -1.09
CLN3-208ENST00000561505 H3BUT2 72 aa8.24□□□□□ -1.09
CLN3-208ENST00000561505 BVES-AS1Q5T3Y7 98 aa8.24□□□□□ -1.09
CLN3-208ENST00000561505 SNHG12Q9BXW3 62 aa8.24□□□□□ -1.09
CLN3-208ENST00000561505 MT1FP04733 61 aa8.23□□□□□ -1.09
CLN3-208ENST00000561505 TEN1Q86WV5 123 aa8.23□□□□□ -1.09
CLN3-208ENST00000561505 HRES1P13985 223 aa8.16□□□□□ -1.1
CLN3-208ENST00000561505 A0A087WSZ3 146 aa8.15□□□□□ -1.1
CLN3-208ENST00000561505 NDUFV3P56181 108 aaKnown RBP8.15□□□□□ -1.1
CLN3-208ENST00000561505 DSCR10P59022 87 aa8.14□□□□□ -1.11
CLN3-208ENST00000561505 C12orf57Q99622 126 aa8.12□□□□□ -1.11
CLN3-208ENST00000561505 H0YGX0 51 aa8.11□□□□□ -1.11
CLN3-208ENST00000561505 KRTAP10-10P60014 251 aa8.11□□□□□ -1.11
CLN3-208ENST00000561505 NOTCH2NLQ7Z3S9 236 aa8.11□□□□□ -1.11
CLN3-208ENST00000561505 FAM218AQ96MZ4 157 aa8.11□□□□□ -1.11
CLN3-208ENST00000561505 LINC00313P59037 77 aa8.1□□□□□ -1.11
CLN3-208ENST00000561505 HIST1H2BLQ99880 126 aa8.1□□□□□ -1.11
CLN3-208ENST00000561505 A0A1W2PNM2 257 aa8.09□□□□□ -1.11
CLN3-208ENST00000561505 HSBP1L1C9JCN9 74 aa8.09□□□□□ -1.11
CLN3-208ENST00000561505 HIST3H2BBQ8N257 126 aa8.09□□□□□ -1.11
CLN3-208ENST00000561505 FAM236DA0A1B0GTK5 79 aa8.08□□□□□ -1.12
CLN3-208ENST00000561505 H3BMG7 143 aa8.08□□□□□ -1.12
CLN3-208ENST00000561505 FAM236CP0DP71 79 aa8.08□□□□□ -1.12
CLN3-208ENST00000561505 KRTAP19-6Q3LI70 58 aa8.08□□□□□ -1.12
CLN3-208ENST00000561505 HIST1H4GQ99525 98 aa8.08□□□□□ -1.12
CLN3-208ENST00000561505 RBM12B-AS1Q9P1G2 102 aa8.08□□□□□ -1.12
CLN3-208ENST00000561505 A0A1B0GX51 115 aa8.07□□□□□ -1.12
CLN3-208ENST00000561505 DLEU1O43261 78 aa8.06□□□□□ -1.12
CLN3-208ENST00000561505 SNCGO76070 127 aa8.06□□□□□ -1.12
CLN3-208ENST00000561505 GHRHP01286 108 aa8.04□□□□□ -1.12
CLN3-208ENST00000561505 COX8AP10176 69 aa8.04□□□□□ -1.12
CLN3-208ENST00000561505 A0A0B4J2C4 111 aa8.03□□□□□ -1.12
CLN3-208ENST00000561505 TRBV7-4A0A0J9YYF1 115 aa8.03□□□□□ -1.12
CLN3-208ENST00000561505 SIGMAR1Q99720 223 aa8.03□□□□□ -1.12
CLN3-208ENST00000561505 LINC00472Q9H8W2 130 aa8.02□□□□□ -1.13
CLN3-208ENST00000561505 IGKV4-1P06312 121 aa8.01□□□□□ -1.13
CLN3-208ENST00000561505 RAB37Q96AX2 223 aa7.99□□□□□ -1.13
CLN3-208ENST00000561505 LINC00846Q9NV44 126 aa7.99□□□□□ -1.13
CLN3-208ENST00000561505 HIGD1BQ9P298 99 aa7.99□□□□□ -1.13
CLN3-208ENST00000561505 S100A2P29034 98 aa7.98□□□□□ -1.13
CLN3-208ENST00000561505 FABP2P12104 132 aa7.97□□□□□ -1.13
CLN3-208ENST00000561505 MACF1Q9UPN3 7388 aaKnown RBP7.96□□□□□ -1.13
CLN3-208ENST00000561505 ANKRD29Q8N6D5 301 aa7.94□□□□□ -1.14
CLN3-208ENST00000561505 MTURNQ8N3F0 131 aa7.93□□□□□ -1.14
CLN3-208ENST00000561505 C2orf91Q6ZV80 131 aa7.92□□□□□ -1.14
CLN3-208ENST00000561505 PRO1854Q9UHT4 67 aa7.92□□□□□ -1.14
CLN3-208ENST00000561505 SYNE2Q8WXH0 6885 aaKnown RBP7.92□□□□□ -1.14
CLN3-208ENST00000561505 H3BQ85 93 aa7.91□□□□□ -1.14
CLN3-208ENST00000561505 DEFB116Q30KQ4 102 aa7.91□□□□□ -1.14
CLN3-208ENST00000561505 IGHV6-1A0A0B4J1U7 121 aa7.9□□□□□ -1.14
CLN3-208ENST00000561505 C8orf87E5RJ46 101 aa7.9□□□□□ -1.14
CLN3-208ENST00000561505 KRTAP6-3Q3LI67 103 aa7.9□□□□□ -1.14
CLN3-208ENST00000561505 C14orf144Q96I85 54 aa7.9□□□□□ -1.14
CLN3-208ENST00000561505 TRIAP1O43715 76 aa7.89□□□□□ -1.15
CLN3-208ENST00000561505 ZCCHC13Q8WW36 166 aaKnown RBP7.89□□□□□ -1.15
CLN3-208ENST00000561505 A8MWP4 228 aa7.88□□□□□ -1.15
CLN3-208ENST00000561505 SPINK7P58062 85 aa7.88□□□□□ -1.15
CLN3-208ENST00000561505 CEND1Q8N111 149 aa7.88□□□□□ -1.15
CLN3-208ENST00000561505 A0A1B0GVX0 72 aa7.87□□□□□ -1.15
CLN3-208ENST00000561505 ORMDL1Q9P0S3 153 aa7.87□□□□□ -1.15
CLN3-208ENST00000561505 TMEM256-PLSCR3K7ERE1 68 aa7.86□□□□□ -1.15
CLN3-208ENST00000561505 CCKP06307 115 aa7.86□□□□□ -1.15
CLN3-208ENST00000561505 TRACP01848 142 aa7.85□□□□□ -1.15
CLN3-208ENST00000561505 S100A6P06703 90 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms