RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 RGPD5Q99666 1765 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 ABCC3O15438 1527 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 I3L3M4 83 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 CYB5AP00167 134 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 LELP1Q5T871 98 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 UBE2D4Q9Y2X8 147 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 RICTORQ6R327 1708 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 KNDC1Q76NI1 1749 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 TOGARAM1Q9Y4F4 1720 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 CCDC88BA6NC98 1476 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 CCDC18Q5T9S5 1454 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 MROH2AA6NES4 1674 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 LOC400499M0QZD8 3231 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 DEPDC5O75140 1603 aa0.2□□□□□ -2.38
VPS13C-207ENST00000558919 MROH2BQ7Z745 1585 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 KDM3BQ7LBC6 1761 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 MYH9P35579 1960 aaKnown RBP0.19□□□□□ -2.38
VPS13C-207ENST00000558919 SPTBN1Q01082 2364 aaKnown RBP0.19□□□□□ -2.38
VPS13C-207ENST00000558919 MAGI3Q5TCQ9 1506 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 XRN1Q8IZH2 1706 aaKnown RBP0.19□□□□□ -2.38
VPS13C-207ENST00000558919 MUC3AQ02505 3323 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 PKDREJQ9NTG1 2253 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 SCN7AQ01118 1682 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 SPINK4O60575 86 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 IGLC2P0DOY2 106 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 IGLC3P0DOY3 106 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 NMSQ5H8A3 153 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 C9orf62Q8N4C0 152 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 RABAC1Q9UI14 185 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 FREM2Q5SZK8 3169 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 DOCK2Q92608 1830 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 CCDC180Q9P1Z9 1646 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 CEP162Q5TB80 1403 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 COL14A1Q05707 1796 aaKnown RBP0.19□□□□□ -2.38
VPS13C-207ENST00000558919 ATMQ13315 3056 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 MYH8P13535 1937 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 MGAQ8IWI9 3026 aa0.19□□□□□ -2.38
VPS13C-207ENST00000558919 C4AP0C0L4 1744 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 DDX60LQ5H9U9 1706 aaKnown RBP0.18□□□□□ -2.38
VPS13C-207ENST00000558919 SRRM2Q9UQ35 2752 aaKnown RBP0.18□□□□□ -2.38
VPS13C-207ENST00000558919 TRIOO75962 3097 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 PSME4Q14997 1843 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 KNL1Q8NG31 2342 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 SCRIBQ14160 1630 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 MROH1Q8NDA8 1641 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 LCE6AA0A183 80 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 A0A1B0GUT8 65 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 CPSF4LA6NMK7 179 aaKnown RBP0.18□□□□□ -2.38
VPS13C-207ENST00000558919 PI4KAP42356 2102 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 SNRPFP62306 86 aaKnown RBP0.18□□□□□ -2.38
VPS13C-207ENST00000558919 PLGLAQ15195 96 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 DEFB112Q30KQ8 113 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 DEFB105AQ8NG35 78 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 MYO7AQ13402 2215 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 NRAPQ86VF7 1730 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 DDX60Q8IY21 1712 aaKnown RBP0.18□□□□□ -2.38
VPS13C-207ENST00000558919 AGLP35573 1532 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 ATP7AQ04656 1500 aa0.18□□□□□ -2.38
VPS13C-207ENST00000558919 SBF2Q86WG5 1849 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 LAMA1P25391 3075 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 PTPN23Q9H3S7 1636 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 ASPMQ8IZT6 3477 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 DOCK11Q5JSL3 2073 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 CSMD1Q96PZ7 3565 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 SPTY2D1-AS1A0A0U1RR47 76 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 MYMXA0A1B0GTQ4 84 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 IQCF6A8MYZ5 107 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 UBR3Q6ZT12 1888 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 MYO5CQ9NQX4 1742 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 PARP4Q9UKK3 1724 aaKnown RBP0.17□□□□□ -2.38
VPS13C-207ENST00000558919 APLNQ9ULZ1 77 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 UTRNP46939 3433 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 DUOX2Q9NRD8 1548 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 NBPF19A0A087WUL8 3843 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 CDH23Q9H251 3354 aa0.17□□□□□ -2.38
VPS13C-207ENST00000558919 HRNRQ86YZ3 2850 aaPredicted RBP0.16□□□□□ -2.38
VPS13C-207ENST00000558919 CDC42BPAQ5VT25 1732 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 MON2Q7Z3U7 1717 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 KIAA1551Q9HCM1 1747 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 CFAP74Q9C0B2 1584 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 CSMD2Q7Z408 3487 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 SVEP1Q4LDE5 3571 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 ACYP1P07311 99 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 KRTAP19-6Q3LI70 58 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 LINC00643Q86TS7 51 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 MYCBP2O75592 4640 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 NFAT5O94916 1531 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 ABCC6O95255 1503 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 URB2Q14146 1524 aaKnown RBP0.16□□□□□ -2.38
VPS13C-207ENST00000558919 AKAP12Q02952 1782 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 LRP1BQ9NZR2 4599 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 NKTRP30414 1462 aaKnown RBP0.16□□□□□ -2.38
VPS13C-207ENST00000558919 DOT1LQ8TEK3 1739 aa0.16□□□□□ -2.38
VPS13C-207ENST00000558919 XIRP2A4UGR9 3374 aa0.15□□□□□ -2.38
VPS13C-207ENST00000558919 ABCC8Q09428 1581 aa0.15□□□□□ -2.38
VPS13C-207ENST00000558919 WNK3Q9BYP7 1800 aa0.15□□□□□ -2.38
VPS13C-207ENST00000558919 LMO7Q8WWI1 1683 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 UACAQ9BZF9 1416 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 MUC12Q9UKN1 5478 aa0.15□□□□□ -2.39
VPS13C-207ENST00000558919 TRPM2O94759 1503 aa0.15□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms