RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 HRCT1Q6UXD1 115 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 LINC00474Q9P2X8 69 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 VPS13DQ5THJ4 4388 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 Q6Q795 121 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 A0A1W2PNM2 257 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 PDE6GP18545 87 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 SPACA4Q8TDM5 124 aa3.68□□□□□ -1.82
SYNE2-225ENST00000557060 BPY2O14599 106 aa3.67□□□□□ -1.82
SYNE2-225ENST00000557060 PLA2G1BP04054 148 aaKnown RBP3.67□□□□□ -1.82
SYNE2-225ENST00000557060 FAM30AQ9NZY2 134 aa3.67□□□□□ -1.82
SYNE2-225ENST00000557060 DNAH2Q9P225 4427 aa3.67□□□□□ -1.82
SYNE2-225ENST00000557060 H3BQ85 93 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 SMIM29Q86T20 159 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 IMUPQ9GZP8 106 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 PSORS1C2Q9UIG4 136 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 A0A087WSZ3 146 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 C9orf153Q5TBE3 101 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 DNAH6Q9C0G6 4158 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 IGLV5-48A0A075B6I7 105 aa3.66□□□□□ -1.82
SYNE2-225ENST00000557060 BCE1O60756 84 aa3.65□□□□□ -1.82
SYNE2-225ENST00000557060 IGFL1Q6UW32 110 aa3.65□□□□□ -1.82
SYNE2-225ENST00000557060 SS18L2Q9UHA2 77 aa3.65□□□□□ -1.82
SYNE2-225ENST00000557060 FRAS1Q86XX4 4008 aa3.65□□□□□ -1.83
SYNE2-225ENST00000557060 HYDINQ4G0P3 5121 aa3.65□□□□□ -1.83
SYNE2-225ENST00000557060 Q8NBF4 154 aa3.64□□□□□ -1.83
SYNE2-225ENST00000557060 CIRBP-AS1Q8TBR5 109 aa3.64□□□□□ -1.83
SYNE2-225ENST00000557060 DYNC2H1Q8NCM8 4307 aaKnown RBP3.64□□□□□ -1.83
SYNE2-225ENST00000557060 ATOX1O00244 68 aa3.63□□□□□ -1.83
SYNE2-225ENST00000557060 RPL37AP61513 92 aaKnown RBP3.63□□□□□ -1.83
SYNE2-225ENST00000557060 ATP5EP2Q5VTU8 51 aa3.63□□□□□ -1.83
SYNE2-225ENST00000557060 PKIGQ9Y2B9 76 aa3.62□□□□□ -1.83
SYNE2-225ENST00000557060 HECTD4Q9Y4D8 3996 aa3.62□□□□□ -1.83
SYNE2-225ENST00000557060 KRTAP10-1P60331 282 aa3.62□□□□□ -1.83
SYNE2-225ENST00000557060 MOBPQ13875 183 aa3.62□□□□□ -1.83
SYNE2-225ENST00000557060 CYSTM1Q9H1C7 97 aa3.62□□□□□ -1.83
SYNE2-225ENST00000557060 K7EQZ3 153 aa3.61□□□□□ -1.83
SYNE2-225ENST00000557060 CXCL6P80162 114 aa3.61□□□□□ -1.83
SYNE2-225ENST00000557060 C20orf197Q8N268 126 aa3.61□□□□□ -1.83
SYNE2-225ENST00000557060 COX7CP15954 63 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 WFDC13Q8IUB5 93 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 PLAC8Q9NZF1 115 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 SNURFQ9Y675 71 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 UQCRQO14949 82 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 CRYGAP11844 174 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 SERP2Q8N6R1 65 aa3.6□□□□□ -1.83
SYNE2-225ENST00000557060 IGKV4-1P06312 121 aa3.59□□□□□ -1.83
SYNE2-225ENST00000557060 PKHD1P08F94 4074 aa3.59□□□□□ -1.83
SYNE2-225ENST00000557060 DNAH11Q96DT5 4516 aa3.59□□□□□ -1.83
SYNE2-225ENST00000557060 ZNF861PO60384 105 aa3.59□□□□□ -1.83
SYNE2-225ENST00000557060 SMR3BP02814 79 aaPredicted RBP3.59□□□□□ -1.83
SYNE2-225ENST00000557060 KRTAP13-1Q8IUC0 172 aa3.59□□□□□ -1.83
SYNE2-225ENST00000557060 SPRR4Q96PI1 79 aa3.59□□□□□ -1.83
SYNE2-225ENST00000557060 H0Y9J4 135 aa3.59□□□□□ -1.84
SYNE2-225ENST00000557060 SPINK6Q6UWN8 80 aa3.59□□□□□ -1.84
SYNE2-225ENST00000557060 DSCR10P59022 87 aa3.58□□□□□ -1.84
SYNE2-225ENST00000557060 IGLV7-43P04211 117 aa3.57□□□□□ -1.84
SYNE2-225ENST00000557060 DNAH17Q9UFH2 4485 aa3.56□□□□□ -1.84
SYNE2-225ENST00000557060 KMT2CQ8NEZ4 4911 aaKnown RBP3.55□□□□□ -1.84
SYNE2-225ENST00000557060 ZNF706Q9Y5V0 76 aaPredicted RBP3.55□□□□□ -1.84
SYNE2-225ENST00000557060 SPRR1BP22528 89 aa3.55□□□□□ -1.84
SYNE2-225ENST00000557060 DNAH8Q96JB1 4490 aa3.54□□□□□ -1.84
SYNE2-225ENST00000557060 LRP1BQ9NZR2 4599 aa3.54□□□□□ -1.84
SYNE2-225ENST00000557060 IGLV8-61A0A075B6I0 122 aa3.54□□□□□ -1.84
SYNE2-225ENST00000557060 A0A087X002 238 aa3.54□□□□□ -1.84
SYNE2-225ENST00000557060 TRAV7A0A075B6U4 112 aa3.53□□□□□ -1.84
SYNE2-225ENST00000557060 SMIM20Q8N5G0 67 aa3.53□□□□□ -1.84
SYNE2-225ENST00000557060 IGHV6-1A0A0B4J1U7 121 aa3.53□□□□□ -1.84
SYNE2-225ENST00000557060 HCG22E2RYF7 251 aa3.53□□□□□ -1.84
SYNE2-225ENST00000557060 DNAH5Q8TE73 4624 aa3.52□□□□□ -1.85
SYNE2-225ENST00000557060 LCE6AA0A183 80 aa3.52□□□□□ -1.85
SYNE2-225ENST00000557060 FLG2Q5D862 2391 aaPredicted RBP3.52□□□□□ -1.85
SYNE2-225ENST00000557060 FAT2Q9NYQ8 4349 aa3.52□□□□□ -1.85
SYNE2-225ENST00000557060 NDUFS5O43920 106 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 A0A1B0GW54 56 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 CDK2AP2O75956 126 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 LINC00483Q53H64 154 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 CASC2Q6XLA1 102 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 TMEM254Q8TBM7 123 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 LINC00472Q9H8W2 130 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 PRR4Q16378 134 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 Q6ZSA8 131 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 OCR1Q9BZK8 76 aa3.51□□□□□ -1.85
SYNE2-225ENST00000557060 PKD1P98161 4303 aa3.5□□□□□ -1.85
SYNE2-225ENST00000557060 NDUFB1O75438 58 aa3.5□□□□□ -1.85
SYNE2-225ENST00000557060 PRR15Q8IV56 129 aa3.5□□□□□ -1.85
SYNE2-225ENST00000557060 A8MWP4 228 aa3.49□□□□□ -1.85
SYNE2-225ENST00000557060 VPS13BQ7Z7G8 4022 aa3.49□□□□□ -1.85
SYNE2-225ENST00000557060 NOTCH2NLQ7Z3S9 236 aa3.49□□□□□ -1.85
SYNE2-225ENST00000557060 SACSQ9NZJ4 4579 aa3.49□□□□□ -1.85
SYNE2-225ENST00000557060 KRTAP13-2Q52LG2 175 aa3.48□□□□□ -1.85
SYNE2-225ENST00000557060 H7BZZ5 65 aa3.48□□□□□ -1.85
SYNE2-225ENST00000557060 Q96NJ1 140 aa3.48□□□□□ -1.85
SYNE2-225ENST00000557060 ALMS1Q8TCU4 4167 aa3.47□□□□□ -1.85
SYNE2-225ENST00000557060 FAT1Q14517 4588 aa3.47□□□□□ -1.85
SYNE2-225ENST00000557060 hDV103S1A0JD37 113 aa3.47□□□□□ -1.85
SYNE2-225ENST00000557060 PRR26Q8N8Z3 221 aa3.47□□□□□ -1.85
SYNE2-225ENST00000557060 LINC00208Q96KT6 92 aa3.47□□□□□ -1.85
SYNE2-225ENST00000557060 RETNLBQ9BQ08 111 aa3.47□□□□□ -1.85
SYNE2-225ENST00000557060 DMBT1Q9UGM3 2413 aaPredicted RBP3.47□□□□□ -1.85
SYNE2-225ENST00000557060 TMEM258P61165 79 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms