RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 PSPHP1O15172 72 aa7.74□□□□□ -1.17
CCDC88C-211ENST00000556726 WIPF1O43516 503 aa7.74□□□□□ -1.17
CCDC88C-211ENST00000556726 ANAPC11Q9NYG5 84 aa7.74□□□□□ -1.17
CCDC88C-211ENST00000556726 KLKP1Q107X0 134 aa7.73□□□□□ -1.17
CCDC88C-211ENST00000556726 C16orf90A8MZG2 172 aa7.73□□□□□ -1.17
CCDC88C-211ENST00000556726 F8WDY8 70 aa7.73□□□□□ -1.17
CCDC88C-211ENST00000556726 PCOTHQ58A44 107 aa7.73□□□□□ -1.17
CCDC88C-211ENST00000556726 CASC2Q6XLA1 102 aa7.72□□□□□ -1.17
CCDC88C-211ENST00000556726 LY6G6CO95867 125 aa7.71□□□□□ -1.17
CCDC88C-211ENST00000556726 IGHV6-1A0A0B4J1U7 121 aa7.7□□□□□ -1.18
CCDC88C-211ENST00000556726 IGLV5-48A0A075B6I7 105 aa7.7□□□□□ -1.18
CCDC88C-211ENST00000556726 TLX1NBP0CAT3 122 aa7.69□□□□□ -1.18
CCDC88C-211ENST00000556726 TGP01266 2768 aa7.67□□□□□ -1.18
CCDC88C-211ENST00000556726 H0Y9P7 68 aa7.67□□□□□ -1.18
CCDC88C-211ENST00000556726 DSCR10P59022 87 aa7.67□□□□□ -1.18
CCDC88C-211ENST00000556726 KRTAP7-1Q8IUC3 87 aa7.67□□□□□ -1.18
CCDC88C-211ENST00000556726 RETNLBQ9BQ08 111 aa7.66□□□□□ -1.18
CCDC88C-211ENST00000556726 OCR1Q9BZK8 76 aa7.66□□□□□ -1.18
CCDC88C-211ENST00000556726 NBDYA0A0U1RRE5 68 aa7.66□□□□□ -1.18
CCDC88C-211ENST00000556726 CIRBP-AS1Q8TBR5 109 aa7.66□□□□□ -1.18
CCDC88C-211ENST00000556726 LINC00336Q6ZUF6 198 aa7.66□□□□□ -1.18
CCDC88C-211ENST00000556726 BCE1O60756 84 aa7.65□□□□□ -1.18
CCDC88C-211ENST00000556726 MOBPQ13875 183 aa7.65□□□□□ -1.18
CCDC88C-211ENST00000556726 COL7A1Q02388 2944 aa7.64□□□□□ -1.19
CCDC88C-211ENST00000556726 FAM229BQ4G0N7 80 aa7.63□□□□□ -1.19
CCDC88C-211ENST00000556726 ATP5EP56381 51 aaPredicted RBP7.63□□□□□ -1.19
CCDC88C-211ENST00000556726 PLA2G2DQ9UNK4 145 aa7.62□□□□□ -1.19
CCDC88C-211ENST00000556726 Q5XG85 94 aa7.61□□□□□ -1.19
CCDC88C-211ENST00000556726 NUPR2A6NF83 97 aa7.61□□□□□ -1.19
CCDC88C-211ENST00000556726 KRTAP11-1Q8IUC1 163 aa7.61□□□□□ -1.19
CCDC88C-211ENST00000556726 C1orf64Q8NEQ6 169 aa7.61□□□□□ -1.19
CCDC88C-211ENST00000556726 PANO1I0J062 215 aa7.6□□□□□ -1.19
CCDC88C-211ENST00000556726 IGLV5-52A0A0A0MRZ9 124 aa7.6□□□□□ -1.19
CCDC88C-211ENST00000556726 SPRR1AP35321 89 aa7.6□□□□□ -1.19
CCDC88C-211ENST00000556726 SPTSSBQ8NFR3 76 aa7.6□□□□□ -1.19
CCDC88C-211ENST00000556726 APLNQ9ULZ1 77 aa7.6□□□□□ -1.19
CCDC88C-211ENST00000556726 KRTAP4-16G5E9R7 235 aaPredicted RBP7.59□□□□□ -1.19
CCDC88C-211ENST00000556726 C9orf163Q8N9P6 203 aa7.59□□□□□ -1.19
CCDC88C-211ENST00000556726 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.59□□□□□ -1.19
CCDC88C-211ENST00000556726 FP248Q71RG6 208 aaPredicted RBP7.58□□□□□ -1.2
CCDC88C-211ENST00000556726 IGLV5-37A0A075B6J1 123 aa7.57□□□□□ -1.2
CCDC88C-211ENST00000556726 RTL8CO15255 209 aa7.57□□□□□ -1.2
CCDC88C-211ENST00000556726 hDV103S1A0JD37 113 aa7.56□□□□□ -1.2
CCDC88C-211ENST00000556726 SPRR4Q96PI1 79 aa7.56□□□□□ -1.2
CCDC88C-211ENST00000556726 CHKB-CPT1BH3BT56 60 aa7.54□□□□□ -1.2
CCDC88C-211ENST00000556726 CNBPP62633 177 aaKnown RBP7.54□□□□□ -1.2
CCDC88C-211ENST00000556726 TNP2Q05952 138 aa7.54□□□□□ -1.2
CCDC88C-211ENST00000556726 PRR15Q8IV56 129 aa7.53□□□□□ -1.2
CCDC88C-211ENST00000556726 PRR15LQ9BU68 103 aa7.53□□□□□ -1.2
CCDC88C-211ENST00000556726 A8MWP4 228 aa7.52□□□□□ -1.21
CCDC88C-211ENST00000556726 A0A1B0GW54 56 aa7.52□□□□□ -1.21
CCDC88C-211ENST00000556726 C1orf134Q5TEV5 83 aa7.52□□□□□ -1.21
CCDC88C-211ENST00000556726 A8MUN3 132 aa7.51□□□□□ -1.21
CCDC88C-211ENST00000556726 PSORS1C2Q9UIG4 136 aa7.51□□□□□ -1.21
CCDC88C-211ENST00000556726 A0A087WTM6 91 aa7.5□□□□□ -1.21
CCDC88C-211ENST00000556726 PRO0628Q9UI54 55 aa7.5□□□□□ -1.21
CCDC88C-211ENST00000556726 TRAV22A0A0B4J277 110 aa7.5□□□□□ -1.21
CCDC88C-211ENST00000556726 ZNF706Q9Y5V0 76 aaPredicted RBP7.49□□□□□ -1.21
CCDC88C-211ENST00000556726 A6NED7 52 aa7.48□□□□□ -1.21
CCDC88C-211ENST00000556726 SPAG11AQ6PDA7 123 aa7.47□□□□□ -1.21
CCDC88C-211ENST00000556726 C1orf195Q5TG92 126 aa7.46□□□□□ -1.22
CCDC88C-211ENST00000556726 SPACA4Q8TDM5 124 aa7.42□□□□□ -1.22
CCDC88C-211ENST00000556726 C8orf17Q9NRJ1 99 aa7.42□□□□□ -1.22
CCDC88C-211ENST00000556726 FBN3Q75N90 2809 aa7.41□□□□□ -1.22
CCDC88C-211ENST00000556726 ZNF861PO60384 105 aa7.4□□□□□ -1.23
CCDC88C-211ENST00000556726 PMAIP1Q13794 54 aa7.39□□□□□ -1.23
CCDC88C-211ENST00000556726 LINC00472Q9H8W2 130 aa7.39□□□□□ -1.23
CCDC88C-211ENST00000556726 COA5Q86WW8 74 aa7.38□□□□□ -1.23
CCDC88C-211ENST00000556726 IGKV2D-30A0A075B6S6 120 aa7.37□□□□□ -1.23
CCDC88C-211ENST00000556726 IGKV2-30P06310 120 aa7.37□□□□□ -1.23
CCDC88C-211ENST00000556726 MMP24-AS1A0A0U1RRL7 71 aa7.37□□□□□ -1.23
CCDC88C-211ENST00000556726 A0A1B0GVX0 72 aa7.36□□□□□ -1.23
CCDC88C-211ENST00000556726 MRPL34Q9BQ48 92 aaKnown RBP7.36□□□□□ -1.23
CCDC88C-211ENST00000556726 SPINK1P00995 79 aa7.35□□□□□ -1.23
CCDC88C-211ENST00000556726 ANK2Q01484 3957 aa7.35□□□□□ -1.23
CCDC88C-211ENST00000556726 V9GYY9 64 aa7.35□□□□□ -1.23
CCDC88C-211ENST00000556726 A0A087X002 238 aa7.34□□□□□ -1.23
CCDC88C-211ENST00000556726 NOTCH2NLQ7Z3S9 236 aa7.34□□□□□ -1.23
CCDC88C-211ENST00000556726 IGLV8-61A0A075B6I0 122 aa7.33□□□□□ -1.24
CCDC88C-211ENST00000556726 IGLV7-43P04211 117 aa7.31□□□□□ -1.24
CCDC88C-211ENST00000556726 TP53AIP1Q9HCN2 124 aa7.31□□□□□ -1.24
CCDC88C-211ENST00000556726 PRR26Q8N8Z3 221 aa7.3□□□□□ -1.24
CCDC88C-211ENST00000556726 KRTAP29-1A8MX34 341 aaPredicted RBP7.3□□□□□ -1.24
CCDC88C-211ENST00000556726 SMR3BP02814 79 aaPredicted RBP7.29□□□□□ -1.24
CCDC88C-211ENST00000556726 SPRR1BP22528 89 aa7.29□□□□□ -1.24
CCDC88C-211ENST00000556726 Q6ZRN7 208 aaPredicted RBP7.29□□□□□ -1.24
CCDC88C-211ENST00000556726 WWC2-AS2Q96NR7 200 aa7.29□□□□□ -1.24
CCDC88C-211ENST00000556726 ZCCHC13Q8WW36 166 aaKnown RBP7.29□□□□□ -1.24
CCDC88C-211ENST00000556726 MEGF8Q7Z7M0 2845 aa7.29□□□□□ -1.24
CCDC88C-211ENST00000556726 CD164Q04900 197 aa7.28□□□□□ -1.24
CCDC88C-211ENST00000556726 H3BPC8 53 aa7.28□□□□□ -1.24
CCDC88C-211ENST00000556726 LINC00313P59037 77 aa7.28□□□□□ -1.24
CCDC88C-211ENST00000556726 A8MU10 97 aa7.27□□□□□ -1.25
CCDC88C-211ENST00000556726 KRTAP10-2P60368 255 aa7.27□□□□□ -1.25
CCDC88C-211ENST00000556726 LIMD2Q9BT23 127 aa7.27□□□□□ -1.25
CCDC88C-211ENST00000556726 DNAH10Q8IVF4 4471 aa7.25□□□□□ -1.25
CCDC88C-211ENST00000556726 Q8N9P0 234 aaPredicted RBP7.25□□□□□ -1.25
CCDC88C-211ENST00000556726 PLA2G1BP04054 148 aaKnown RBP7.25□□□□□ -1.25
CCDC88C-211ENST00000556726 CYP4F30PQ9H0H9 118 aa7.24□□□□□ -1.25
CCDC88C-211ENST00000556726 Q1T7F1 81 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms