RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TRGC2P03986 189 aa5.41□□□□□ -1.54
SCFD1-220ENST00000556486 HINT1P49773 126 aaPredicted RBP5.41□□□□□ -1.54
SCFD1-220ENST00000556486 SPANXCQ9NY87 97 aa5.41□□□□□ -1.54
SCFD1-220ENST00000556486 C9orf92A6NGG3 77 aa5.4□□□□□ -1.54
SCFD1-220ENST00000556486 CD164Q04900 197 aa5.4□□□□□ -1.54
SCFD1-220ENST00000556486 TIMM17BO60830 172 aa5.39□□□□□ -1.55
SCFD1-220ENST00000556486 Q5XG85 94 aa5.39□□□□□ -1.55
SCFD1-220ENST00000556486 PMCHL2Q9BQD1 86 aa5.39□□□□□ -1.55
SCFD1-220ENST00000556486 FLGP20930 4061 aaPredicted RBP5.39□□□□□ -1.55
SCFD1-220ENST00000556486 LINC00308Q8TCZ7 52 aa5.38□□□□□ -1.55
SCFD1-220ENST00000556486 SPANXDQ9BXN6 97 aa5.38□□□□□ -1.55
SCFD1-220ENST00000556486 FABP4P15090 132 aa5.37□□□□□ -1.55
SCFD1-220ENST00000556486 ELOF1P60002 83 aaKnown RBP5.37□□□□□ -1.55
SCFD1-220ENST00000556486 NPC2P61916 151 aa5.37□□□□□ -1.55
SCFD1-220ENST00000556486 COX6B2Q6YFQ2 88 aa5.37□□□□□ -1.55
SCFD1-220ENST00000556486 LAMTOR3Q9UHA4 124 aa5.37□□□□□ -1.55
SCFD1-220ENST00000556486 TRBV7-6A0A0J9YX20 115 aa5.36□□□□□ -1.55
SCFD1-220ENST00000556486 Q1RN00 199 aa5.35□□□□□ -1.55
SCFD1-220ENST00000556486 LCE1AQ5T7P2 110 aa5.35□□□□□ -1.55
SCFD1-220ENST00000556486 PRO1933Q9H354 126 aa5.35□□□□□ -1.55
SCFD1-220ENST00000556486 TEX49A0A1B0GTD5 131 aa5.34□□□□□ -1.55
SCFD1-220ENST00000556486 COX7BP24311 80 aa5.34□□□□□ -1.55
SCFD1-220ENST00000556486 C6orf99Q4VX62 202 aa5.34□□□□□ -1.55
SCFD1-220ENST00000556486 IGLV5-48A0A075B6I7 105 aa5.33□□□□□ -1.56
SCFD1-220ENST00000556486 COLCA2A8K830 154 aa5.33□□□□□ -1.56
SCFD1-220ENST00000556486 SYS1-DBNDD2H3BUS1 97 aa5.33□□□□□ -1.56
SCFD1-220ENST00000556486 LINC01545Q5VT33 79 aa5.33□□□□□ -1.56
SCFD1-220ENST00000556486 HRCT1Q6UXD1 115 aa5.33□□□□□ -1.56
SCFD1-220ENST00000556486 OR13C6PQ8NH95 151 aa5.33□□□□□ -1.56
SCFD1-220ENST00000556486 FCGBPQ9Y6R7 5405 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-220ENST00000556486 ZNF815PA8K554 130 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 KRTAP16-1A8MUX0 517 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 H7C2G1 150 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 AKR1D1P51857 326 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 RPL37P61927 97 aaKnown RBP5.31□□□□□ -1.56
SCFD1-220ENST00000556486 VAMP3Q15836 100 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 TAL2Q16559 108 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 C1orf195Q5TG92 126 aa5.31□□□□□ -1.56
SCFD1-220ENST00000556486 Q6ZVH6 145 aa5.28□□□□□ -1.56
SCFD1-220ENST00000556486 DEFB105AQ8NG35 78 aa5.28□□□□□ -1.56
SCFD1-220ENST00000556486 COPS9Q8WXC6 57 aa5.28□□□□□ -1.56
SCFD1-220ENST00000556486 HIST1H2BKO60814 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BJP06899 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 IFITM1P13164 125 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BOP23527 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BBP33778 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BDP58876 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BCP62807 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST2H2BEQ16778 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-220ENST00000556486 Q6Q795 121 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BHQ93079 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BNQ99877 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 HIST1H2BMQ99879 126 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 TTTY13Q9BZ97 58 aa5.27□□□□□ -1.57
SCFD1-220ENST00000556486 NHP2Q9NX24 153 aaKnown RBP5.25□□□□□ -1.57
SCFD1-220ENST00000556486 TCL1BO95988 128 aa5.24□□□□□ -1.57
SCFD1-220ENST00000556486 C3orf79P0CE67 100 aa5.24□□□□□ -1.57
SCFD1-220ENST00000556486 COA6Q5JTJ3 125 aaKnown RBP5.24□□□□□ -1.57
SCFD1-220ENST00000556486 A0A0G2JQZ4 141 aa5.23□□□□□ -1.57
SCFD1-220ENST00000556486 A6NDN8 102 aa5.23□□□□□ -1.57
SCFD1-220ENST00000556486 SCGB1D4Q6XE38 83 aa5.23□□□□□ -1.57
SCFD1-220ENST00000556486 V9GYY9 64 aa5.23□□□□□ -1.57
SCFD1-220ENST00000556486 TRAV13-2A0A0B4J235 113 aa5.22□□□□□ -1.57
SCFD1-220ENST00000556486 SMIM11BQ8TCY0 68 aa5.21□□□□□ -1.58
SCFD1-220ENST00000556486 Q6JHZ5 121 aa5.2□□□□□ -1.58
SCFD1-220ENST00000556486 MUSTN1Q8IVN3 82 aa5.2□□□□□ -1.58
SCFD1-220ENST00000556486 SLC7A5P1Q8MH63 180 aa5.2□□□□□ -1.58
SCFD1-220ENST00000556486 CEND1Q8N111 149 aa5.2□□□□□ -1.58
SCFD1-220ENST00000556486 C20orf202A1L168 122 aa5.19□□□□□ -1.58
SCFD1-220ENST00000556486 CLEC2BQ92478 149 aa5.19□□□□□ -1.58
SCFD1-220ENST00000556486 TRBV7-7A0A0K0K1E9 115 aa5.18□□□□□ -1.58
SCFD1-220ENST00000556486 F8WEM9 126 aa5.18□□□□□ -1.58
SCFD1-220ENST00000556486 KRTDAPP60985 99 aa5.18□□□□□ -1.58
SCFD1-220ENST00000556486 LINC00575Q6W349 94 aa5.18□□□□□ -1.58
SCFD1-220ENST00000556486 PCP2Q8IVA1 136 aa5.18□□□□□ -1.58
SCFD1-220ENST00000556486 IGFL1Q6UW32 110 aa5.16□□□□□ -1.58
SCFD1-220ENST00000556486 PPDPFLQ8WWR9 84 aa5.16□□□□□ -1.58
SCFD1-220ENST00000556486 ATP11AUNQ6ZP68 121 aa5.15□□□□□ -1.59
SCFD1-220ENST00000556486 Q6ZQY7 126 aa5.15□□□□□ -1.59
SCFD1-220ENST00000556486 MACF1Q9UPN3 7388 aaKnown RBP5.14□□□□□ -1.59
SCFD1-220ENST00000556486 hADV29S1A0JD25 119 aa5.14□□□□□ -1.59
SCFD1-220ENST00000556486 OCIAD2Q56VL3 154 aa5.14□□□□□ -1.59
SCFD1-220ENST00000556486 OBSCN-AS1Q96MR7 158 aa5.14□□□□□ -1.59
SCFD1-220ENST00000556486 SYNE2Q8WXH0 6885 aaKnown RBP5.14□□□□□ -1.59
SCFD1-220ENST00000556486 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.13□□□□□ -1.59
SCFD1-220ENST00000556486 ATOH7Q8N100 152 aa5.13□□□□□ -1.59
SCFD1-220ENST00000556486 C20orf166-AS1Q96NR2 134 aa5.12□□□□□ -1.59
SCFD1-220ENST00000556486 MT2AP02795 61 aa5.11□□□□□ -1.59
SCFD1-220ENST00000556486 MT3P25713 68 aa5.1□□□□□ -1.59
SCFD1-220ENST00000556486 A8MUU9 505 aa5.09□□□□□ -1.59
SCFD1-220ENST00000556486 LST1O00453 97 aa5.09□□□□□ -1.59
SCFD1-220ENST00000556486 MT1FP04733 61 aa5.09□□□□□ -1.59
SCFD1-220ENST00000556486 BVES-AS1Q5T3Y7 98 aa5.09□□□□□ -1.59
SCFD1-220ENST00000556486 SS18L2Q9UHA2 77 aa5.09□□□□□ -1.59
SCFD1-220ENST00000556486 Q96NJ1 140 aa5.07□□□□□ -1.6
SCFD1-220ENST00000556486 SNHG12Q9BXW3 62 aa5.07□□□□□ -1.6
SCFD1-220ENST00000556486 H3BUT2 72 aa5.05□□□□□ -1.6
SCFD1-220ENST00000556486 TEN1Q86WV5 123 aa5.05□□□□□ -1.6
SCFD1-220ENST00000556486 KRTAP10-10P60014 251 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms