RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 KRTAP10-4P60372 401 aaPredicted RBP6.75□□□□□ -1.33
SHMT2-220ENST00000555634 ANKRD29Q8N6D5 301 aa6.75□□□□□ -1.33
SHMT2-220ENST00000555634 DNAH8Q96JB1 4490 aa6.74□□□□□ -1.33
SHMT2-220ENST00000555634 IGLV9-49A0A0B4J1Y8 123 aa6.74□□□□□ -1.33
SHMT2-220ENST00000555634 JMJD7-PLA2G4BH0Y9G9 81 aa6.74□□□□□ -1.33
SHMT2-220ENST00000555634 Q8NBF4 154 aa6.74□□□□□ -1.33
SHMT2-220ENST00000555634 NDUFV3P56181 108 aaKnown RBP6.73□□□□□ -1.33
SHMT2-220ENST00000555634 C21orf62-AS1Q17RA5 79 aa6.73□□□□□ -1.33
SHMT2-220ENST00000555634 Q8N377 158 aa6.73□□□□□ -1.33
SHMT2-220ENST00000555634 MTURNQ8N3F0 131 aa6.73□□□□□ -1.33
SHMT2-220ENST00000555634 APOBP04114 4563 aaKnown RBP6.72□□□□□ -1.33
SHMT2-220ENST00000555634 LINC01547P58512 204 aaPredicted RBP6.71□□□□□ -1.34
SHMT2-220ENST00000555634 MOBPQ13875 183 aa6.71□□□□□ -1.34
SHMT2-220ENST00000555634 Q6JHZ5 121 aa6.71□□□□□ -1.34
SHMT2-220ENST00000555634 DSCR8Q96T75 97 aa6.71□□□□□ -1.34
SHMT2-220ENST00000555634 SRRM2Q9UQ35 2752 aaKnown RBP6.7□□□□□ -1.34
SHMT2-220ENST00000555634 RBM3P98179 157 aaKnown RBP6.7□□□□□ -1.34
SHMT2-220ENST00000555634 C3orf22Q8N5N4 141 aa6.7□□□□□ -1.34
SHMT2-220ENST00000555634 A0A1B0GV72 72 aa6.69□□□□□ -1.34
SHMT2-220ENST00000555634 TYMSOSQ8TAI1 123 aa6.69□□□□□ -1.34
SHMT2-220ENST00000555634 KRTAP1-4P0C5Y4 121 aa6.68□□□□□ -1.34
SHMT2-220ENST00000555634 PDE6GP18545 87 aa6.68□□□□□ -1.34
SHMT2-220ENST00000555634 C4orf48Q5BLP8 95 aa6.67□□□□□ -1.34
SHMT2-220ENST00000555634 ANAPC11Q9NYG5 84 aa6.67□□□□□ -1.34
SHMT2-220ENST00000555634 SSBP3-AS1Q7Z2R9 100 aa6.66□□□□□ -1.34
SHMT2-220ENST00000555634 SMIM29Q86T20 159 aa6.66□□□□□ -1.34
SHMT2-220ENST00000555634 TEN1Q86WV5 123 aa6.66□□□□□ -1.34
SHMT2-220ENST00000555634 PRO0461Q9UI25 63 aa6.66□□□□□ -1.34
SHMT2-220ENST00000555634 IGLV8-61A0A075B6I0 122 aa6.65□□□□□ -1.34
SHMT2-220ENST00000555634 A0A087X002 238 aa6.65□□□□□ -1.34
SHMT2-220ENST00000555634 OXTP01178 125 aa6.65□□□□□ -1.34
SHMT2-220ENST00000555634 LINC01600Q96MT4 127 aa6.65□□□□□ -1.34
SHMT2-220ENST00000555634 PRR26Q8N8Z3 221 aa6.64□□□□□ -1.35
SHMT2-220ENST00000555634 VPS25Q9BRG1 176 aa6.63□□□□□ -1.35
SHMT2-220ENST00000555634 KRTAP4-5Q9BYR2 181 aa6.63□□□□□ -1.35
SHMT2-220ENST00000555634 C14orf132Q9NPU4 83 aa6.63□□□□□ -1.35
SHMT2-220ENST00000555634 LOC110117498A0A087WWA1 95 aa6.62□□□□□ -1.35
SHMT2-220ENST00000555634 CCKP06307 115 aa6.62□□□□□ -1.35
SHMT2-220ENST00000555634 SMCPP49901 116 aaPredicted RBP6.62□□□□□ -1.35
SHMT2-220ENST00000555634 ETDBQ3ZM63 59 aa6.62□□□□□ -1.35
SHMT2-220ENST00000555634 SPAG11AQ6PDA7 123 aa6.62□□□□□ -1.35
SHMT2-220ENST00000555634 LINC00304Q8N9R0 145 aa6.62□□□□□ -1.35
SHMT2-220ENST00000555634 HSPG2P98160 4391 aa6.62□□□□□ -1.35
SHMT2-220ENST00000555634 KRTAP13-2Q52LG2 175 aa6.61□□□□□ -1.35
SHMT2-220ENST00000555634 IGFL1Q6UW32 110 aa6.61□□□□□ -1.35
SHMT2-220ENST00000555634 LIMD2Q9BT23 127 aa6.61□□□□□ -1.35
SHMT2-220ENST00000555634 TRBV7-4A0A0J9YYF1 115 aa6.6□□□□□ -1.35
SHMT2-220ENST00000555634 J3QR89 54 aa6.6□□□□□ -1.35
SHMT2-220ENST00000555634 CD164Q04900 197 aa6.6□□□□□ -1.35
SHMT2-220ENST00000555634 OBSCN-AS1Q96MR7 158 aa6.6□□□□□ -1.35
SHMT2-220ENST00000555634 SS18L2Q9UHA2 77 aa6.6□□□□□ -1.35
SHMT2-220ENST00000555634 VPS13BQ7Z7G8 4022 aa6.6□□□□□ -1.35
SHMT2-220ENST00000555634 J3QL48 77 aa6.59□□□□□ -1.35
SHMT2-220ENST00000555634 A0A1B0GW54 56 aa6.58□□□□□ -1.36
SHMT2-220ENST00000555634 SPINK1P00995 79 aa6.58□□□□□ -1.36
SHMT2-220ENST00000555634 KRTAP29-1A8MX34 341 aaPredicted RBP6.57□□□□□ -1.36
SHMT2-220ENST00000555634 Q6Q795 121 aa6.57□□□□□ -1.36
SHMT2-220ENST00000555634 HRCT1Q6UXD1 115 aa6.57□□□□□ -1.36
SHMT2-220ENST00000555634 Q6ZQT0 140 aa6.57□□□□□ -1.36
SHMT2-220ENST00000555634 TRBV7-7A0A0K0K1E9 115 aa6.55□□□□□ -1.36
SHMT2-220ENST00000555634 RPS29P62273 56 aaKnown RBP6.55□□□□□ -1.36
SHMT2-220ENST00000555634 FAT1Q14517 4588 aa6.54□□□□□ -1.36
SHMT2-220ENST00000555634 FLG2Q5D862 2391 aaPredicted RBP6.54□□□□□ -1.36
SHMT2-220ENST00000555634 ACYP1P07311 99 aa6.53□□□□□ -1.36
SHMT2-220ENST00000555634 A0A087WSZ3 146 aa6.52□□□□□ -1.37
SHMT2-220ENST00000555634 A0A0G2JQZ4 141 aa6.51□□□□□ -1.37
SHMT2-220ENST00000555634 FAM240AA0A1B0GVK7 77 aa6.51□□□□□ -1.37
SHMT2-220ENST00000555634 A0A1W2PNM2 257 aa6.51□□□□□ -1.37
SHMT2-220ENST00000555634 K7ERU9 68 aa6.51□□□□□ -1.37
SHMT2-220ENST00000555634 KRTAP10-8P60410 259 aa6.51□□□□□ -1.37
SHMT2-220ENST00000555634 UBL5Q9BZL1 73 aa6.51□□□□□ -1.37
SHMT2-220ENST00000555634 DMBT1Q9UGM3 2413 aaPredicted RBP6.48□□□□□ -1.37
SHMT2-220ENST00000555634 NREPQ16612 68 aa6.48□□□□□ -1.37
SHMT2-220ENST00000555634 Q5XG85 94 aa6.48□□□□□ -1.37
SHMT2-220ENST00000555634 PKHD1L1Q86WI1 4243 aa6.47□□□□□ -1.37
SHMT2-220ENST00000555634 MT1HL1P0DM35 61 aa6.47□□□□□ -1.37
SHMT2-220ENST00000555634 J3KT08 172 aa6.45□□□□□ -1.38
SHMT2-220ENST00000555634 ASB16-AS1Q495Z4 193 aa6.45□□□□□ -1.38
SHMT2-220ENST00000555634 SIGMAR1Q99720 223 aa6.44□□□□□ -1.38
SHMT2-220ENST00000555634 ATP5EP2Q5VTU8 51 aa6.42□□□□□ -1.38
SHMT2-220ENST00000555634 Q6ZVQ6 151 aa6.42□□□□□ -1.38
SHMT2-220ENST00000555634 BPY2O14599 106 aa6.41□□□□□ -1.38
SHMT2-220ENST00000555634 NDUFB1O75438 58 aa6.41□□□□□ -1.38
SHMT2-220ENST00000555634 FP248Q71RG6 208 aaPredicted RBP6.41□□□□□ -1.38
SHMT2-220ENST00000555634 LINC00846Q9NV44 126 aa6.41□□□□□ -1.38
SHMT2-220ENST00000555634 IGKV4-1P06312 121 aa6.4□□□□□ -1.38
SHMT2-220ENST00000555634 PRR4Q16378 134 aa6.37□□□□□ -1.39
SHMT2-220ENST00000555634 C1orf195Q5TG92 126 aa6.37□□□□□ -1.39
SHMT2-220ENST00000555634 RETNLBQ9BQ08 111 aa6.37□□□□□ -1.39
SHMT2-220ENST00000555634 MYCBP2O75592 4640 aa6.37□□□□□ -1.39
SHMT2-220ENST00000555634 CXCL6P80162 114 aa6.36□□□□□ -1.39
SHMT2-220ENST00000555634 LINC00643Q86TS7 51 aa6.36□□□□□ -1.39
SHMT2-220ENST00000555634 LINC00472Q9H8W2 130 aa6.35□□□□□ -1.39
SHMT2-220ENST00000555634 A8MWP4 228 aa6.34□□□□□ -1.39
SHMT2-220ENST00000555634 DEFB116Q30KQ4 102 aa6.34□□□□□ -1.39
SHMT2-220ENST00000555634 LRP1Q07954 4544 aaKnown RBP6.33□□□□□ -1.4
SHMT2-220ENST00000555634 Q96NJ1 140 aa6.33□□□□□ -1.4
SHMT2-220ENST00000555634 IGLV7-46A0A075B6I9 117 aa6.32□□□□□ -1.4
SHMT2-220ENST00000555634 FAT3Q8TDW7 4589 aa6.32□□□□□ -1.4
SHMT2-220ENST00000555634 IGHV6-1A0A0B4J1U7 121 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms