RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 LINC00310P59036 64 aa6.28□□□□□ -1.4
VPS29-211ENST00000553128 TIMM17BO60830 172 aa6.27□□□□□ -1.41
VPS29-211ENST00000553128 CLEC2BQ92478 149 aa6.27□□□□□ -1.41
VPS29-211ENST00000553128 MDN1Q9NU22 5596 aa6.26□□□□□ -1.41
VPS29-211ENST00000553128 F8WEM9 126 aa6.26□□□□□ -1.41
VPS29-211ENST00000553128 LST1O00453 97 aa6.26□□□□□ -1.41
VPS29-211ENST00000553128 SERF1AO75920 110 aa6.26□□□□□ -1.41
VPS29-211ENST00000553128 FABP4P15090 132 aa6.26□□□□□ -1.41
VPS29-211ENST00000553128 TTTY13Q9BZ97 58 aa6.25□□□□□ -1.41
VPS29-211ENST00000553128 RBM12B-AS1Q9P1G2 102 aa6.25□□□□□ -1.41
VPS29-211ENST00000553128 Q6JHZ5 121 aa6.24□□□□□ -1.41
VPS29-211ENST00000553128 DSCR10P59022 87 aa6.23□□□□□ -1.41
VPS29-211ENST00000553128 YPEL4Q96NS1 127 aa6.23□□□□□ -1.41
VPS29-211ENST00000553128 A6NDN8 102 aa6.22□□□□□ -1.41
VPS29-211ENST00000553128 NOTCH2NLQ7Z3S9 236 aa6.22□□□□□ -1.41
VPS29-211ENST00000553128 Q8N9P0 234 aaPredicted RBP6.22□□□□□ -1.41
VPS29-211ENST00000553128 A4D1N5 150 aa6.21□□□□□ -1.42
VPS29-211ENST00000553128 HSPB8Q9UJY1 196 aa6.21□□□□□ -1.42
VPS29-211ENST00000553128 ZNF815PA8K554 130 aa6.2□□□□□ -1.42
VPS29-211ENST00000553128 OCIAD2Q56VL3 154 aa6.2□□□□□ -1.42
VPS29-211ENST00000553128 SLC7A5P1Q8MH63 180 aa6.2□□□□□ -1.42
VPS29-211ENST00000553128 SMIM11BQ8TCY0 68 aa6.2□□□□□ -1.42
VPS29-211ENST00000553128 NHP2Q9NX24 153 aaKnown RBP6.2□□□□□ -1.42
VPS29-211ENST00000553128 TRAV13-2A0A0B4J235 113 aa6.19□□□□□ -1.42
VPS29-211ENST00000553128 Q6ZQY7 126 aa6.19□□□□□ -1.42
VPS29-211ENST00000553128 H3BUT2 72 aa6.17□□□□□ -1.42
VPS29-211ENST00000553128 LINC00575Q6W349 94 aa6.16□□□□□ -1.42
VPS29-211ENST00000553128 KMT2DO14686 5537 aa6.16□□□□□ -1.42
VPS29-211ENST00000553128 Q6ZVH6 145 aa6.15□□□□□ -1.42
VPS29-211ENST00000553128 APOC3P02656 99 aa6.14□□□□□ -1.43
VPS29-211ENST00000553128 TRGC2P03986 189 aa6.14□□□□□ -1.43
VPS29-211ENST00000553128 MUSTN1Q8IVN3 82 aa6.13□□□□□ -1.43
VPS29-211ENST00000553128 hADV29S1A0JD25 119 aa6.12□□□□□ -1.43
VPS29-211ENST00000553128 A8MWP4 228 aa6.12□□□□□ -1.43
VPS29-211ENST00000553128 SS18L2Q9UHA2 77 aa6.11□□□□□ -1.43
VPS29-211ENST00000553128 SYS1-DBNDD2H3BUS1 97 aa6.1□□□□□ -1.43
VPS29-211ENST00000553128 SNAPINO95295 136 aa6.1□□□□□ -1.43
VPS29-211ENST00000553128 ANKRD39Q53RE8 183 aa6.1□□□□□ -1.43
VPS29-211ENST00000553128 A0A087WSZ3 146 aa6.09□□□□□ -1.43
VPS29-211ENST00000553128 COLCA2A8K830 154 aa6.09□□□□□ -1.43
VPS29-211ENST00000553128 IFITM1P13164 125 aa6.09□□□□□ -1.43
VPS29-211ENST00000553128 SCGB1D4Q6XE38 83 aa6.09□□□□□ -1.43
VPS29-211ENST00000553128 LINC00313P59037 77 aa6.08□□□□□ -1.44
VPS29-211ENST00000553128 VAMP3Q15836 100 aa6.07□□□□□ -1.44
VPS29-211ENST00000553128 LINC01545Q5VT33 79 aa6.07□□□□□ -1.44
VPS29-211ENST00000553128 SVBPQ8N300 66 aa6.07□□□□□ -1.44
VPS29-211ENST00000553128 MTURNQ8N3F0 131 aa6.07□□□□□ -1.44
VPS29-211ENST00000553128 SIGMAR1Q99720 223 aa6.07□□□□□ -1.44
VPS29-211ENST00000553128 COPS9Q8WXC6 57 aa6.06□□□□□ -1.44
VPS29-211ENST00000553128 SNHG12Q9BXW3 62 aa6.06□□□□□ -1.44
VPS29-211ENST00000553128 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.05□□□□□ -1.44
VPS29-211ENST00000553128 TEN1Q86WV5 123 aa6.05□□□□□ -1.44
VPS29-211ENST00000553128 KRTAP4-8Q9BYQ9 185 aa6.05□□□□□ -1.44
VPS29-211ENST00000553128 KRTAP5-9P26371 169 aa6.04□□□□□ -1.44
VPS29-211ENST00000553128 A6NN06 94 aa6.02□□□□□ -1.45
VPS29-211ENST00000553128 SCGB1D1O95968 90 aa6.02□□□□□ -1.45
VPS29-211ENST00000553128 PPDPFLQ8WWR9 84 aa6.02□□□□□ -1.45
VPS29-211ENST00000553128 NDUFA5Q16718 116 aa6.01□□□□□ -1.45
VPS29-211ENST00000553128 KRTAP2-3P0C7H8 128 aa6□□□□□ -1.45
VPS29-211ENST00000553128 SPINK7P58062 85 aa6□□□□□ -1.45
VPS29-211ENST00000553128 PET117Q6UWS5 81 aa6□□□□□ -1.45
VPS29-211ENST00000553128 KRTAP2-4Q9BYR9 128 aa6□□□□□ -1.45
VPS29-211ENST00000553128 IGKV4-1P06312 121 aa5.99□□□□□ -1.45
VPS29-211ENST00000553128 DEFB116Q30KQ4 102 aa5.98□□□□□ -1.45
VPS29-211ENST00000553128 A0A1W2PNM2 257 aa5.97□□□□□ -1.45
VPS29-211ENST00000553128 C3orf79P0CE67 100 aa5.96□□□□□ -1.46
VPS29-211ENST00000553128 IGHV6-1A0A0B4J1U7 121 aa5.95□□□□□ -1.46
VPS29-211ENST00000553128 NDUFV3P56181 108 aaKnown RBP5.95□□□□□ -1.46
VPS29-211ENST00000553128 MT1BP07438 61 aa5.94□□□□□ -1.46
VPS29-211ENST00000553128 WFDC13Q8IUB5 93 aa5.94□□□□□ -1.46
VPS29-211ENST00000553128 ATOH7Q8N100 152 aa5.94□□□□□ -1.46
VPS29-211ENST00000553128 ZCCHC13Q8WW36 166 aaKnown RBP5.94□□□□□ -1.46
VPS29-211ENST00000553128 H3BMG7 143 aa5.91□□□□□ -1.46
VPS29-211ENST00000553128 BVES-AS1Q5T3Y7 98 aa5.91□□□□□ -1.46
VPS29-211ENST00000553128 C12orf57Q99622 126 aa5.91□□□□□ -1.46
VPS29-211ENST00000553128 KRTDAPP60985 99 aa5.9□□□□□ -1.46
VPS29-211ENST00000553128 LINC00472Q9H8W2 130 aa5.9□□□□□ -1.46
VPS29-211ENST00000553128 FAM218AQ96MZ4 157 aa5.89□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BKO60814 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BJP06899 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BOP23527 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BBP33778 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BDP58876 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 KRTAP10-5P60370 271 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BCP62807 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST2H2BEQ16778 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BHQ93079 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BNQ99877 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 HIST1H2BMQ99879 126 aa5.88□□□□□ -1.47
VPS29-211ENST00000553128 KRTAP4-12Q9BQ66 201 aa5.87□□□□□ -1.47
VPS29-211ENST00000553128 TRBV7-4A0A0J9YYF1 115 aa5.83□□□□□ -1.48
VPS29-211ENST00000553128 A0A1B0GV72 72 aa5.83□□□□□ -1.48
VPS29-211ENST00000553128 A0A1B0GVX0 72 aa5.83□□□□□ -1.48
VPS29-211ENST00000553128 H3BS24 57 aa5.83□□□□□ -1.48
VPS29-211ENST00000553128 FABP2P12104 132 aa5.83□□□□□ -1.48
VPS29-211ENST00000553128 Q5VV11 94 aa5.83□□□□□ -1.48
VPS29-211ENST00000553128 C8orf87E5RJ46 101 aa5.82□□□□□ -1.48
VPS29-211ENST00000553128 H1FX-AS1Q4G0G2 97 aa5.82□□□□□ -1.48
VPS29-211ENST00000553128 RAB37Q96AX2 223 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 299.6 ms