RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 C9orf92A6NGG3 77 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 H3BVH4 76 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 ARMS2P0C7Q2 107 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 ROMO1P60602 79 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 PDE6HQ13956 83 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 IQCJQ1A5X6 159 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 NAA38Q9BRA0 125 aaKnown RBP1.71□□□□□ -2.14
LIMA1-208ENST00000551691 LENEPQ9Y5L5 61 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 CCL25O15444 150 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 TRACP01848 142 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 MT-ND4LP03901 98 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 PKIAP61925 76 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 TMEM14EPQ6UXP3 125 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 CIB3Q96Q77 187 aaPredicted RBP1.7□□□□□ -2.14
LIMA1-208ENST00000551691 GGACTQ9BVM4 153 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 SCN3BQ9NY72 215 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 CACFD1Q9UGQ2 172 aa1.7□□□□□ -2.14
LIMA1-208ENST00000551691 F8W1H4 67 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 UQCRQO14949 82 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 SSSCA1O60232 199 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 FGF7P21781 194 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 SPRR2EP22531 72 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 SPRR2BP35325 72 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 SPRR2AP35326 72 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 ZNF56Q15929 161 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 SMIM3Q9BZL3 60 aa1.69□□□□□ -2.14
LIMA1-208ENST00000551691 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.68□□□□□ -2.14
LIMA1-208ENST00000551691 LOC107984156A0A0G2JMH3 177 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 LINC00959A0A1B0GUT2 108 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 IGKV2-29A2NJV5 120 aaPredicted RBP1.68□□□□□ -2.14
LIMA1-208ENST00000551691 BCE1O60756 84 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 CRIP1P50238 77 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 FOXA3P55318 350 aaPredicted RBP1.68□□□□□ -2.14
LIMA1-208ENST00000551691 UNQ6190/PRO20217Q6UXQ8 127 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 C5orf38Q86SI9 138 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 ARL17AQ8IVW1 177 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 NIT2Q9NQR4 276 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 MED9Q9NWA0 146 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 ORMDL1Q9P0S3 153 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 C22orf24Q9Y442 160 aa1.68□□□□□ -2.14
LIMA1-208ENST00000551691 SMIM31A0A1B0GVY4 71 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 H3BRM9 83 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 HBDP02042 147 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 CKS2P33552 79 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 NCS1P62166 190 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 SPAG11AQ6PDA7 123 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 KRTAP13-1Q8IUC0 172 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 CLEC2BQ92478 149 aa1.67□□□□□ -2.14
LIMA1-208ENST00000551691 ZNF625Q96I27 306 aaPredicted RBP1.67□□□□□ -2.14
LIMA1-208ENST00000551691 HMCN1Q96RW7 5635 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 AHNAK2Q8IVF2 5795 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 UBE2L5PA0A1B0GUS4 154 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 K7ERU9 68 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 NUPR1O60356 82 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 TCRAP04437 139 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 SLC25A6P12236 298 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 CASC2Q6XLA1 102 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 Q86TA4 180 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 OR10AG1Q8NH19 301 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 SMIM7Q9BQ49 75 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 VPS25Q9BRG1 176 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 CDC42SE1Q9NRR8 79 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 C6orf48Q9UBA6 75 aa1.66□□□□□ -2.14
LIMA1-208ENST00000551691 A0A087WSZ3 146 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 IGKV3D-7A0A0C4DH55 119 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 M0QY20 66 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 DNAL4O96015 105 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 COX7CP15954 63 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 S100A1P23297 94 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 UBE2L3P68036 154 aaKnown RBP1.65□□□□□ -2.15
LIMA1-208ENST00000551691 PRLHP81277 87 aa1.65□□□□□ -2.15
LIMA1-208ENST00000551691 C9orf170A2RU37 121 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 FAM25AB3EWG3 89 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 FAM25CB3EWG5 89 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 FAM25GB3EWG6 89 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 SPINK1P00995 79 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 ARL14EPLP0DKL9 152 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 SPAG11BQ08648 103 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.64□□□□□ -2.15
LIMA1-208ENST00000551691 ZCCHC13Q8WW36 166 aaKnown RBP1.64□□□□□ -2.15
LIMA1-208ENST00000551691 Q9H521 79 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 MRPL35Q9NZE8 188 aaKnown RBP1.64□□□□□ -2.15
LIMA1-208ENST00000551691 NDUFA12Q9UI09 145 aa1.64□□□□□ -2.15
LIMA1-208ENST00000551691 SFT2D2O95562 160 aa1.63□□□□□ -2.15
LIMA1-208ENST00000551691 MGPP08493 103 aa1.63□□□□□ -2.15
LIMA1-208ENST00000551691 SPRR2DP22532 72 aa1.63□□□□□ -2.15
LIMA1-208ENST00000551691 NEDD8Q15843 81 aa1.63□□□□□ -2.15
LIMA1-208ENST00000551691 KRTAP13-4Q3LI77 160 aa1.63□□□□□ -2.15
LIMA1-208ENST00000551691 SPRR2FQ96RM1 72 aa1.63□□□□□ -2.15
LIMA1-208ENST00000551691 A6NN06 94 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 AKAIN1P0CW23 69 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 RPL37P61927 97 aaKnown RBP1.62□□□□□ -2.15
LIMA1-208ENST00000551691 MIR22HGQ0VDD5 57 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 LINC00299Q6ZSB3 139 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 C5orf17Q8NAS9 161 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 CDC42SE2Q9NRR3 84 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 ARL2-SNX15V9GYD0 113 aa1.62□□□□□ -2.15
LIMA1-208ENST00000551691 C20orf202A1L168 122 aa1.61□□□□□ -2.15
LIMA1-208ENST00000551691 NDUFA1O15239 70 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms