RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	S100A8	P05109	93 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	IGLC3	P0DOY3	106 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	CEBPG	P53567	150 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	RPL23	P62829	140 aa	Known RBP	0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	MT1X	P80297	61 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	FAM74A3	Q4VXF1	159 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	PCP2	Q8IVA1	136 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623		Q8N8P6	123 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	CST9L	Q9H4G1	147 aa		0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	SPANXB1	Q9NS25	103 aa	Predicted RBP	0.94	□□□□□ -2.26
PTCH1-223	ENST00000551623	TRAV23DV6	A0A075B6W5	121 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	TRBV7-7	A0A0K0K1E9	115 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623		A0A1W2PNM2	257 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	ZNF815P	A8K554	130 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	LINC00587	B1AMM8	73 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	TEX46	H3BTG2	121 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	NCR3	O14931	201 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	ZNF22	P17026	224 aa	Predicted RBP	0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	ELOF1	P60002	83 aa	Known RBP	0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	PMVK	Q15126	192 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	TMEM136	Q6ZRR5	245 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	PRELID3A	Q96N28	172 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	NXT2	Q9NPJ8	142 aa	Known RBP	0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	PRO2289	Q9P1D8	64 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	CBY1	Q9Y3M2	126 aa		0.93	□□□□□ -2.26
PTCH1-223	ENST00000551623	TRBV7-6	A0A0J9YX20	115 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623		A0A1B0GV50	99 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	LINC00158	P58513	81 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	HERV-K104	P63124	156 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	IFITM3	Q01628	133 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	SOSTDC1	Q6X4U4	206 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	ATP5L2	Q7Z4Y8	100 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	MIR7-3HG	Q8N6C7	128 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	CLEC2B	Q92478	149 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	MAP1LC3A	Q9H492	121 aa		0.92	□□□□□ -2.26
PTCH1-223	ENST00000551623	ARPC5	O15511	151 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	SMIM13	P0DJ93	91 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	ADCYAP1	P18509	176 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	MT4	P47944	62 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	SPINK7	P58062	85 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	H1FX-AS1	Q4G0G2	97 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623		Q6JHZ5	121 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	SCGB3A1	Q96QR1	104 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	MUC5AC	P98088	5654 aa		0.91	□□□□□ -2.26
PTCH1-223	ENST00000551623	C11orf86	A6NJI1	115 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	LST1	O00453	97 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	SERF1A	O75920	110 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	HINT1	P49773	126 aa	Predicted RBP	0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	MEIG1	Q5JSS6	88 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	S100A7L2	Q5SY68	101 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	MRPL54	Q6P161	138 aa	Known RBP	0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	WFDC13	Q8IUB5	93 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	S100Z	Q8WXG8	99 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	SMIM7	Q9BQ49	75 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	MAP1LC3C	Q9BXW4	147 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	CRIPT	Q9P021	101 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623	SS18L2	Q9UHA2	77 aa		0.9	□□□□□ -2.27
PTCH1-223	ENST00000551623		A0A096LNJ9	63 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623		A0A0U1RRA0	63 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	TMEM223	A0PJW6	202 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	IFITM2	Q01629	132 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	KLKP1	Q107X0	134 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	TAL2	Q16559	108 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	COMMD7	Q86VX2	200 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	ZCCHC13	Q8WW36	166 aa	Known RBP	0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623	IMUP	Q9GZP8	106 aa		0.89	□□□□□ -2.27
PTCH1-223	ENST00000551623		A0A1B0GWB2	263 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	COLCA2	A8K830	154 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	ATP6V1G1	O75348	118 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	COX7B	P24311	80 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	LINC00313	P59037	77 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	BAGE3	Q86Y29	109 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	SPANXD	Q9BXN6	97 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	SPANXC	Q9NY87	97 aa		0.88	□□□□□ -2.27
PTCH1-223	ENST00000551623	TRAV13-2	A0A0B4J235	113 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	MYMX	A0A1B0GTQ4	84 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	FAM236A	A0A1B0GUQ0	79 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	FAM236B	A0A1B0GV22	79 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	KANTR	A0A1W2PQU2	76 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623		A4D1N5	150 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623		F8WEM9	126 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	HBD	P02042	147 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	KRTAP12-4	P60329	112 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	KRTAP20-2	Q3LI61	65 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	OCIAD2	Q56VL3	154 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	TMEM170B	Q5T4T1	132 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	KRTAP19-3	Q7Z4W3	81 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	PRR15	Q8IV56	129 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	DEFB105A	Q8NG35	78 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	MIEN1	Q9BRT3	115 aa		0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	AHNAK	Q09666	5890 aa	Known RBP	0.87	□□□□□ -2.27
PTCH1-223	ENST00000551623	TRAV12-1	A0A0B4J245	112 aa		0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623		A0A0J9YXY3	114 aa		0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	SRP19	P09132	144 aa	Known RBP	0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	C3orf79	P0CE67	100 aa		0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	NMU	P48645	174 aa		0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	RBM3	P98179	157 aa	Known RBP	0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	RHEB	Q15382	184 aa		0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	TEN1	Q86WV5	123 aa		0.86	□□□□□ -2.27
PTCH1-223	ENST00000551623	PPDPFL	Q8WWR9	84 aa		0.86	□□□□□ -2.27

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