RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ZNF861PO60384 105 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 APCSP02743 223 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 UBE2D1P51668 147 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 POLR2KP53803 58 aaKnown RBP2.03□□□□□ -2.08
LIMA1-206ENST00000550611 NPC2P61916 151 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 SS18Q15532 418 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 C9orf129Q5T035 196 aaKnown RBP2.03□□□□□ -2.08
LIMA1-206ENST00000550611 KRTAP5-7Q6L8G8 165 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 SCGB1D4Q6XE38 83 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 CEND1Q8N111 149 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 TSKUQ8WUA8 353 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 FAM104AQ969W3 186 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 RPL39LQ96EH5 51 aaKnown RBP2.03□□□□□ -2.08
LIMA1-206ENST00000550611 CAMK2N2Q96S95 79 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 SMIM7Q9BQ49 75 aa2.03□□□□□ -2.08
LIMA1-206ENST00000550611 TRBV20OR9-2A0A075B6H5 130 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 TRBV27A0A0K0K1C4 114 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 H3BT86 120 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 I3L3M4 83 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 NDUFS5O43920 106 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 IGKCP01834 107 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 ACYP1P07311 99 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 LGALS3P17931 250 aaKnown RBP2.02□□□□□ -2.09
LIMA1-206ENST00000550611 CCL20P78556 96 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 KIAA0087Q14695 138 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 KRTAP13-2Q52LG2 175 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 CENPWQ5EE01 88 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 UNQ6190/PRO20217Q6UXQ8 127 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 C5orf38Q86SI9 138 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 C6orf48Q9UBA6 75 aa2.02□□□□□ -2.09
LIMA1-206ENST00000550611 IGHV3OR16-9A0A0B4J2B5 98 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 A0A0J9YXY3 114 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 TRBV7-7A0A0K0K1E9 115 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 KRTAP4-16G5E9R7 235 aaPredicted RBP2.01□□□□□ -2.09
LIMA1-206ENST00000550611 PPP1R17O96001 155 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 PSMB2P49721 201 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 RPL23P62829 140 aaKnown RBP2.01□□□□□ -2.09
LIMA1-206ENST00000550611 MT1HP80294 61 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 SPAG11BQ08648 103 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 ASB16-AS1Q495Z4 193 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 ATP5L2Q7Z4Y8 100 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 PRR15Q8IV56 129 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 NXT2Q9NPJ8 142 aaKnown RBP2.01□□□□□ -2.09
LIMA1-206ENST00000550611 HIGD1BQ9P298 99 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 UBE2D4Q9Y2X8 147 aa2.01□□□□□ -2.09
LIMA1-206ENST00000550611 NDUFA1O15239 70 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 LEPROTL1O95214 131 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 HERVK_113P61574 105 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 UBE2BP63146 152 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 KRTAP19-2Q3LHN2 52 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 KRTAP20-1Q3LI63 56 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 PP632Q6XCG6 107 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 CHCHD1Q96BP2 118 aaKnown RBP2□□□□□ -2.09
LIMA1-206ENST00000550611 RETNLBQ9BQ08 111 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 TIMM21Q9BVV7 248 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 ANAPC11Q9NYG5 84 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 C22orf24Q9Y442 160 aa2□□□□□ -2.09
LIMA1-206ENST00000550611 TRBV7-6A0A0J9YX20 115 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 hADV29S1A0JD25 119 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 TCL1BO95988 128 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 NPYP01303 97 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 ATP5EP56381 51 aaPredicted RBP1.99□□□□□ -2.09
LIMA1-206ENST00000550611 ORMDL2Q53FV1 153 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 RNASE13Q5GAN3 156 aaKnown RBP1.99□□□□□ -2.09
LIMA1-206ENST00000550611 TMEM170BQ5T4T1 132 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 LINC00173Q6ZV60 143 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 C2orf91Q6ZV80 131 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 LINC00643Q86TS7 51 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 KRTAP13-1Q8IUC0 172 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 RBM12B-AS1Q9P1G2 102 aa1.99□□□□□ -2.09
LIMA1-206ENST00000550611 TRBV30A0A0K0K1B3 111 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 BCE1O60756 84 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 CKS2P33552 79 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 RPL28P46779 137 aaKnown RBP1.98□□□□□ -2.09
LIMA1-206ENST00000550611 HBBP68871 147 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 KRTAP6-3Q3LI67 103 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 FAM229BQ4G0N7 80 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 FAM19A2Q8N3H0 131 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 SERP2Q8N6R1 65 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 LINC00304Q8N9R0 145 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 DSCR8Q96T75 97 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 NHP2Q9NX24 153 aaKnown RBP1.98□□□□□ -2.09
LIMA1-206ENST00000550611 TP73-AS1Q9UF72 201 aa1.98□□□□□ -2.09
LIMA1-206ENST00000550611 KMT2DO14686 5537 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 GPR98Q8WXG9 6306 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 LOC107984156A0A0G2JMH3 177 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 MYMXA0A1B0GTQ4 84 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 LINC01549A6NIU2 74 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 C8orf87E5RJ46 101 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 NDUFC1O43677 76 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 FCER1GP30273 86 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 RPL39P62891 51 aaKnown RBP1.97□□□□□ -2.09
LIMA1-206ENST00000550611 C2orf82Q6UX34 121 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 FP248Q71RG6 208 aaPredicted RBP1.97□□□□□ -2.09
LIMA1-206ENST00000550611 KTN1-AS1Q86SY8 53 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 ARL17AQ8IVW1 177 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 HIST1H4GQ99525 98 aa1.97□□□□□ -2.09
LIMA1-206ENST00000550611 FLGP20930 4061 aaPredicted RBP1.96□□□□□ -2.09
LIMA1-206ENST00000550611 A0A1B0GUT8 65 aa1.96□□□□□ -2.1
LIMA1-206ENST00000550611 A0A1B0GXF2 115 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms