RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 H3BQ85 93 aa6.9□□□□□ -1.3
CUX1-212ENST00000547394 BPY2O14599 106 aa6.9□□□□□ -1.3
CUX1-212ENST00000547394 OXTP01178 125 aa6.9□□□□□ -1.3
CUX1-212ENST00000547394 C20orf197Q8N268 126 aa6.9□□□□□ -1.3
CUX1-212ENST00000547394 DNAH11Q96DT5 4516 aa6.9□□□□□ -1.31
CUX1-212ENST00000547394 RPS28P62857 69 aaKnown RBP6.9□□□□□ -1.31
CUX1-212ENST00000547394 IGLV5-48A0A075B6I7 105 aa6.89□□□□□ -1.31
CUX1-212ENST00000547394 DEFB116Q30KQ4 102 aa6.89□□□□□ -1.31
CUX1-212ENST00000547394 UBE2AP49459 152 aa6.89□□□□□ -1.31
CUX1-212ENST00000547394 RTL8CO15255 209 aa6.88□□□□□ -1.31
CUX1-212ENST00000547394 NREPQ16612 68 aa6.88□□□□□ -1.31
CUX1-212ENST00000547394 LINC00476Q8WZB0 136 aa6.88□□□□□ -1.31
CUX1-212ENST00000547394 TNP2Q05952 138 aa6.88□□□□□ -1.31
CUX1-212ENST00000547394 Q6ZR54 194 aa6.87□□□□□ -1.31
CUX1-212ENST00000547394 DNAH5Q8TE73 4624 aa6.85□□□□□ -1.31
CUX1-212ENST00000547394 IGFL1Q6UW32 110 aa6.85□□□□□ -1.31
CUX1-212ENST00000547394 SPACA4Q8TDM5 124 aa6.85□□□□□ -1.31
CUX1-212ENST00000547394 ANAPC11Q9NYG5 84 aa6.85□□□□□ -1.31
CUX1-212ENST00000547394 F8WEM9 126 aa6.84□□□□□ -1.31
CUX1-212ENST00000547394 C1orf134Q5TEV5 83 aa6.84□□□□□ -1.31
CUX1-212ENST00000547394 Q8NBF4 154 aa6.83□□□□□ -1.32
CUX1-212ENST00000547394 IGLV5-52A0A0A0MRZ9 124 aa6.83□□□□□ -1.32
CUX1-212ENST00000547394 C4orf26Q17RF5 130 aa6.82□□□□□ -1.32
CUX1-212ENST00000547394 SNURFQ9Y675 71 aa6.82□□□□□ -1.32
CUX1-212ENST00000547394 CXCL6P80162 114 aa6.82□□□□□ -1.32
CUX1-212ENST00000547394 TRAV7A0A075B6U4 112 aa6.81□□□□□ -1.32
CUX1-212ENST00000547394 A0A087WSZ3 146 aa6.81□□□□□ -1.32
CUX1-212ENST00000547394 KRTAP10-2P60368 255 aa6.81□□□□□ -1.32
CUX1-212ENST00000547394 LINC00474Q9P2X8 69 aa6.81□□□□□ -1.32
CUX1-212ENST00000547394 IGLV9-49A0A0B4J1Y8 123 aa6.81□□□□□ -1.32
CUX1-212ENST00000547394 FAM236DA0A1B0GTK5 79 aa6.8□□□□□ -1.32
CUX1-212ENST00000547394 IGKV4-1P06312 121 aa6.8□□□□□ -1.32
CUX1-212ENST00000547394 FAM236CP0DP71 79 aa6.8□□□□□ -1.32
CUX1-212ENST00000547394 BCE1O60756 84 aa6.8□□□□□ -1.32
CUX1-212ENST00000547394 PSORS1C2Q9UIG4 136 aa6.8□□□□□ -1.32
CUX1-212ENST00000547394 H7BZZ5 65 aa6.79□□□□□ -1.32
CUX1-212ENST00000547394 HRCT1Q6UXD1 115 aa6.79□□□□□ -1.32
CUX1-212ENST00000547394 FAM30AQ9NZY2 134 aa6.79□□□□□ -1.32
CUX1-212ENST00000547394 FAT2Q9NYQ8 4349 aa6.79□□□□□ -1.32
CUX1-212ENST00000547394 PKHD1P08F94 4074 aa6.79□□□□□ -1.32
CUX1-212ENST00000547394 Q5XG85 94 aa6.79□□□□□ -1.32
CUX1-212ENST00000547394 RPL37AP61513 92 aaKnown RBP6.78□□□□□ -1.32
CUX1-212ENST00000547394 LRP1BQ9NZR2 4599 aa6.78□□□□□ -1.32
CUX1-212ENST00000547394 K7EQZ3 153 aa6.77□□□□□ -1.33
CUX1-212ENST00000547394 KRTAP13-1Q8IUC0 172 aa6.76□□□□□ -1.33
CUX1-212ENST00000547394 SPRR4Q96PI1 79 aa6.76□□□□□ -1.33
CUX1-212ENST00000547394 ALMS1Q8TCU4 4167 aa6.76□□□□□ -1.33
CUX1-212ENST00000547394 PKD1P98161 4303 aa6.76□□□□□ -1.33
CUX1-212ENST00000547394 DSCR10P59022 87 aa6.75□□□□□ -1.33
CUX1-212ENST00000547394 KLKP1Q107X0 134 aa6.75□□□□□ -1.33
CUX1-212ENST00000547394 WWC2-AS2Q96NR7 200 aa6.75□□□□□ -1.33
CUX1-212ENST00000547394 H0Y9J4 135 aa6.73□□□□□ -1.33
CUX1-212ENST00000547394 SACSQ9NZJ4 4579 aa6.72□□□□□ -1.33
CUX1-212ENST00000547394 SERP1Q9Y6X1 66 aa6.72□□□□□ -1.33
CUX1-212ENST00000547394 PLAC8Q9NZF1 115 aa6.71□□□□□ -1.33
CUX1-212ENST00000547394 CIRBP-AS1Q8TBR5 109 aa6.71□□□□□ -1.34
CUX1-212ENST00000547394 PKIGQ9Y2B9 76 aa6.71□□□□□ -1.34
CUX1-212ENST00000547394 WFDC13Q8IUB5 93 aa6.7□□□□□ -1.34
CUX1-212ENST00000547394 IGLV8-61A0A075B6I0 122 aa6.7□□□□□ -1.34
CUX1-212ENST00000547394 MOBPQ13875 183 aa6.7□□□□□ -1.34
CUX1-212ENST00000547394 SPRR1BP22528 89 aa6.69□□□□□ -1.34
CUX1-212ENST00000547394 VPS13BQ7Z7G8 4022 aa6.69□□□□□ -1.34
CUX1-212ENST00000547394 KRTAP10-1P60331 282 aa6.69□□□□□ -1.34
CUX1-212ENST00000547394 TMEM254Q8TBM7 123 aa6.68□□□□□ -1.34
CUX1-212ENST00000547394 ZNF861PO60384 105 aa6.67□□□□□ -1.34
CUX1-212ENST00000547394 SEC61GP60059 68 aa6.66□□□□□ -1.34
CUX1-212ENST00000547394 FP248Q71RG6 208 aaPredicted RBP6.65□□□□□ -1.34
CUX1-212ENST00000547394 OCR1Q9BZK8 76 aa6.65□□□□□ -1.34
CUX1-212ENST00000547394 KMT2CQ8NEZ4 4911 aaKnown RBP6.64□□□□□ -1.35
CUX1-212ENST00000547394 NDUFC1O43677 76 aa6.64□□□□□ -1.35
CUX1-212ENST00000547394 IGLV7-43P04211 117 aa6.63□□□□□ -1.35
CUX1-212ENST00000547394 A0A1B0GW54 56 aa6.63□□□□□ -1.35
CUX1-212ENST00000547394 LINC00336Q6ZUF6 198 aa6.63□□□□□ -1.35
CUX1-212ENST00000547394 SMIM26A0A096LP01 95 aa6.63□□□□□ -1.35
CUX1-212ENST00000547394 HCG22E2RYF7 251 aa6.62□□□□□ -1.35
CUX1-212ENST00000547394 LINC00472Q9H8W2 130 aa6.62□□□□□ -1.35
CUX1-212ENST00000547394 LINC00483Q53H64 154 aa6.6□□□□□ -1.35
CUX1-212ENST00000547394 A0A0U1RQV1 116 aa6.6□□□□□ -1.35
CUX1-212ENST00000547394 FAM229BQ4G0N7 80 aa6.59□□□□□ -1.35
CUX1-212ENST00000547394 FAT1Q14517 4588 aa6.59□□□□□ -1.35
CUX1-212ENST00000547394 KRTAP21-3Q3LHN1 58 aa6.59□□□□□ -1.35
CUX1-212ENST00000547394 SPINK6Q6UWN8 80 aa6.59□□□□□ -1.35
CUX1-212ENST00000547394 ATP5EP56381 51 aaPredicted RBP6.59□□□□□ -1.36
CUX1-212ENST00000547394 ZNF706Q9Y5V0 76 aaPredicted RBP6.58□□□□□ -1.36
CUX1-212ENST00000547394 MPLKIPQ8TAP9 179 aa6.58□□□□□ -1.36
CUX1-212ENST00000547394 DYNC1H1Q14204 4646 aaKnown RBP6.57□□□□□ -1.36
CUX1-212ENST00000547394 A0A087X002 238 aa6.57□□□□□ -1.36
CUX1-212ENST00000547394 Q96NJ1 140 aa6.57□□□□□ -1.36
CUX1-212ENST00000547394 PRR15Q8IV56 129 aa6.57□□□□□ -1.36
CUX1-212ENST00000547394 A8MWP4 228 aa6.56□□□□□ -1.36
CUX1-212ENST00000547394 CASC2Q6XLA1 102 aa6.55□□□□□ -1.36
CUX1-212ENST00000547394 IGHV6-1A0A0B4J1U7 121 aa6.55□□□□□ -1.36
CUX1-212ENST00000547394 SMR3BP02814 79 aaPredicted RBP6.55□□□□□ -1.36
CUX1-212ENST00000547394 NOTCH2NLQ7Z3S9 236 aa6.55□□□□□ -1.36
CUX1-212ENST00000547394 PRR4Q16378 134 aa6.54□□□□□ -1.36
CUX1-212ENST00000547394 PRO0628Q9UI54 55 aa6.54□□□□□ -1.36
CUX1-212ENST00000547394 Q6ZSA8 131 aa6.54□□□□□ -1.36
CUX1-212ENST00000547394 KRTAP29-1A8MX34 341 aaPredicted RBP6.52□□□□□ -1.37
CUX1-212ENST00000547394 C4orf48Q5BLP8 95 aa6.52□□□□□ -1.37
CUX1-212ENST00000547394 RYR2Q92736 4967 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms