RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NBEAL1Q6ZS30 2694 aa9.3□□□□□ -0.92
LIMS1-215ENST00000544547 KTN1-AS1Q86SY8 53 aa9.29□□□□□ -0.92
LIMS1-215ENST00000544547 MOBPQ13875 183 aa9.29□□□□□ -0.92
LIMS1-215ENST00000544547 IGKV2D-30A0A075B6S6 120 aa9.27□□□□□ -0.93
LIMS1-215ENST00000544547 IGKV2-30P06310 120 aa9.27□□□□□ -0.93
LIMS1-215ENST00000544547 C15orf56Q8N910 161 aa9.27□□□□□ -0.93
LIMS1-215ENST00000544547 APCP25054 2843 aa9.27□□□□□ -0.93
LIMS1-215ENST00000544547 IGFL1Q6UW32 110 aa9.27□□□□□ -0.93
LIMS1-215ENST00000544547 BAHCC1Q9P281 2608 aa9.26□□□□□ -0.93
LIMS1-215ENST00000544547 PHF5AQ7RTV0 110 aaKnown RBP9.26□□□□□ -0.93
LIMS1-215ENST00000544547 SPACA4Q8TDM5 124 aa9.26□□□□□ -0.93
LIMS1-215ENST00000544547 LINC00588Q9Y4M8 146 aa9.26□□□□□ -0.93
LIMS1-215ENST00000544547 DSCR10P59022 87 aa9.25□□□□□ -0.93
LIMS1-215ENST00000544547 ATP11AUNQ6ZP68 121 aa9.25□□□□□ -0.93
LIMS1-215ENST00000544547 LOC101927531A0A1B0GV80 90 aa9.25□□□□□ -0.93
LIMS1-215ENST00000544547 LINC00612Q8N6U2 182 aa9.25□□□□□ -0.93
LIMS1-215ENST00000544547 CYP4F30PQ9H0H9 118 aa9.25□□□□□ -0.93
LIMS1-215ENST00000544547 IGLV1-50A0A075B6I6 118 aa9.24□□□□□ -0.93
LIMS1-215ENST00000544547 COL6A5A8TX70 2615 aa9.24□□□□□ -0.93
LIMS1-215ENST00000544547 IGLV5-48A0A075B6I7 105 aa9.23□□□□□ -0.93
LIMS1-215ENST00000544547 H3BPC8 53 aa9.23□□□□□ -0.93
LIMS1-215ENST00000544547 CHTF8P0CG12 524 aa9.22□□□□□ -0.93
LIMS1-215ENST00000544547 NBDYA0A0U1RRE5 68 aa9.21□□□□□ -0.93
LIMS1-215ENST00000544547 KRTAP1-1Q07627 177 aa9.21□□□□□ -0.93
LIMS1-215ENST00000544547 RBM12B-AS1Q9P1G2 102 aa9.21□□□□□ -0.93
LIMS1-215ENST00000544547 HIVEP1P15822 2718 aa9.2□□□□□ -0.94
LIMS1-215ENST00000544547 NIPBLQ6KC79 2804 aaeCLIP9.19□□□□□ -0.94
LIMS1-215ENST00000544547 FLG2Q5D862 2391 aaPredicted RBP9.19□□□□□ -0.94
LIMS1-215ENST00000544547 A8MWP4 228 aa9.18□□□□□ -0.94
LIMS1-215ENST00000544547 C16orf90A8MZG2 172 aa9.18□□□□□ -0.94
LIMS1-215ENST00000544547 A0A1B0GU69 56 aa9.16□□□□□ -0.94
LIMS1-215ENST00000544547 C7orf65Q6ZTY9 151 aa9.16□□□□□ -0.94
LIMS1-215ENST00000544547 RTL8CO15255 209 aa9.16□□□□□ -0.94
LIMS1-215ENST00000544547 DNAH10OSP0CZ25 163 aa9.16□□□□□ -0.94
LIMS1-215ENST00000544547 TP53AIP1Q9HCN2 124 aa9.15□□□□□ -0.94
LIMS1-215ENST00000544547 Q5VV11 94 aa9.15□□□□□ -0.94
LIMS1-215ENST00000544547 Q8N9P0 234 aaPredicted RBP9.15□□□□□ -0.94
LIMS1-215ENST00000544547 IGLV8-61A0A075B6I0 122 aa9.15□□□□□ -0.95
LIMS1-215ENST00000544547 BSNQ9UPA5 3926 aa9.13□□□□□ -0.95
LIMS1-215ENST00000544547 CASC10Q5T4H9 136 aa9.12□□□□□ -0.95
LIMS1-215ENST00000544547 A8MU10 97 aa9.09□□□□□ -0.95
LIMS1-215ENST00000544547 CDC42SE1Q9NRR8 79 aa9.09□□□□□ -0.95
LIMS1-215ENST00000544547 SPANXA2-OT1Q8N9U9 137 aa9.09□□□□□ -0.95
LIMS1-215ENST00000544547 SPRR4Q96PI1 79 aa9.09□□□□□ -0.95
LIMS1-215ENST00000544547 ACYP2P14621 99 aa9.09□□□□□ -0.95
LIMS1-215ENST00000544547 C8orf87E5RJ46 101 aa9.08□□□□□ -0.96
LIMS1-215ENST00000544547 LCA10Q71F78 164 aa9.08□□□□□ -0.96
LIMS1-215ENST00000544547 PRR26Q8N8Z3 221 aa9.08□□□□□ -0.96
LIMS1-215ENST00000544547 TYMSOSQ8TAI1 123 aa9.08□□□□□ -0.96
LIMS1-215ENST00000544547 NSD1Q96L73 2696 aaPredicted RBP9.07□□□□□ -0.96
LIMS1-215ENST00000544547 K7EIL1 84 aa9.06□□□□□ -0.96
LIMS1-215ENST00000544547 LINC00313P59037 77 aa9.05□□□□□ -0.96
LIMS1-215ENST00000544547 KRTAP10-11P60412 298 aa9.05□□□□□ -0.96
LIMS1-215ENST00000544547 CSMD2Q7Z408 3487 aa9.04□□□□□ -0.96
LIMS1-215ENST00000544547 PRAC1Q96KF2 57 aa9.04□□□□□ -0.96
LIMS1-215ENST00000544547 WWC2-AS2Q96NR7 200 aa9.02□□□□□ -0.96
LIMS1-215ENST00000544547 FAM229AH3BQW9 127 aa9.02□□□□□ -0.97
LIMS1-215ENST00000544547 C8orf17Q9NRJ1 99 aa9.01□□□□□ -0.97
LIMS1-215ENST00000544547 Q75L30 129 aa9.01□□□□□ -0.97
LIMS1-215ENST00000544547 MRPL34Q9BQ48 92 aaKnown RBP9.01□□□□□ -0.97
LIMS1-215ENST00000544547 PLA2G1BP04054 148 aaKnown RBP8.98□□□□□ -0.97
LIMS1-215ENST00000544547 CNBPP62633 177 aaKnown RBP8.98□□□□□ -0.97
LIMS1-215ENST00000544547 TLX1NBP0CAT3 122 aa8.97□□□□□ -0.97
LIMS1-215ENST00000544547 SPINK7P58062 85 aa8.96□□□□□ -0.97
LIMS1-215ENST00000544547 PLA2G2DQ9UNK4 145 aa8.96□□□□□ -0.97
LIMS1-215ENST00000544547 IGLV7-46A0A075B6I9 117 aa8.96□□□□□ -0.97
LIMS1-215ENST00000544547 Q96NJ1 140 aa8.96□□□□□ -0.97
LIMS1-215ENST00000544547 ANAPC11Q9NYG5 84 aa8.95□□□□□ -0.98
LIMS1-215ENST00000544547 ZCCHC13Q8WW36 166 aaKnown RBP8.95□□□□□ -0.98
LIMS1-215ENST00000544547 C9orf163Q8N9P6 203 aa8.94□□□□□ -0.98
LIMS1-215ENST00000544547 STAB2Q8WWQ8 2551 aa8.94□□□□□ -0.98
LIMS1-215ENST00000544547 UQCR11O14957 56 aa8.92□□□□□ -0.98
LIMS1-215ENST00000544547 MIR22HGQ0VDD5 57 aa8.92□□□□□ -0.98
LIMS1-215ENST00000544547 A0A1B0GVX0 72 aa8.92□□□□□ -0.98
LIMS1-215ENST00000544547 ZNF861PO60384 105 aa8.9□□□□□ -0.98
LIMS1-215ENST00000544547 VWFP04275 2813 aa8.89□□□□□ -0.99
LIMS1-215ENST00000544547 A0A087WTM6 91 aa8.89□□□□□ -0.99
LIMS1-215ENST00000544547 TNP2Q05952 138 aa8.89□□□□□ -0.99
LIMS1-215ENST00000544547 LINC01558Q9Y6Z2 57 aa8.89□□□□□ -0.99
LIMS1-215ENST00000544547 VPS13CQ709C8 3753 aa8.89□□□□□ -0.99
LIMS1-215ENST00000544547 SPRR1AP35321 89 aa8.88□□□□□ -0.99
LIMS1-215ENST00000544547 DMBT1Q9UGM3 2413 aaPredicted RBP8.88□□□□□ -0.99
LIMS1-215ENST00000544547 SSBP3-AS1Q7Z2R9 100 aa8.88□□□□□ -0.99
LIMS1-215ENST00000544547 IGLV5-37A0A075B6J1 123 aa8.87□□□□□ -0.99
LIMS1-215ENST00000544547 MMP24-AS1A0A0U1RRL7 71 aa8.86□□□□□ -0.99
LIMS1-215ENST00000544547 H3BS24 57 aa8.86□□□□□ -0.99
LIMS1-215ENST00000544547 HRES1P13985 223 aa8.86□□□□□ -0.99
LIMS1-215ENST00000544547 KRTAP26-1Q6PEX3 210 aa8.85□□□□□ -0.99
LIMS1-215ENST00000544547 ZFHX3Q15911 3703 aa8.84□□□□□ -0.99
LIMS1-215ENST00000544547 SMR3BP02814 79 aaPredicted RBP8.83□□□□□ -1
LIMS1-215ENST00000544547 LINC01554Q52M75 96 aa8.83□□□□□ -1
LIMS1-215ENST00000544547 TENM1Q9UKZ4 2725 aa8.83□□□□□ -1
LIMS1-215ENST00000544547 LINC00472Q9H8W2 130 aa8.81□□□□□ -1
LIMS1-215ENST00000544547 PSORS1C2Q9UIG4 136 aa8.81□□□□□ -1
LIMS1-215ENST00000544547 LINC00304Q8N9R0 145 aa8.8□□□□□ -1
LIMS1-215ENST00000544547 LCE6AA0A183 80 aa8.79□□□□□ -1
LIMS1-215ENST00000544547 KRTAP4-16G5E9R7 235 aaPredicted RBP8.78□□□□□ -1
LIMS1-215ENST00000544547 KRTAP29-1A8MX34 341 aaPredicted RBP8.78□□□□□ -1
LIMS1-215ENST00000544547 APLNQ9ULZ1 77 aa8.77□□□□□ -1.01
LIMS1-215ENST00000544547 KMT2BQ9UMN6 2715 aaPredicted RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms