RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 DNAH17Q9UFH2 4485 aa8.92□□□□□ -0.98
VPS33A-209ENST00000544349 A0A1W2PNM2 257 aa8.92□□□□□ -0.98
VPS33A-209ENST00000544349 C20orf197Q8N268 126 aa8.92□□□□□ -0.98
VPS33A-209ENST00000544349 BPY2O14599 106 aa8.9□□□□□ -0.98
VPS33A-209ENST00000544349 IGKV4-1P06312 121 aa8.9□□□□□ -0.98
VPS33A-209ENST00000544349 HECTD4Q9Y4D8 3996 aa8.9□□□□□ -0.98
VPS33A-209ENST00000544349 KRTAP10-2P60368 255 aa8.9□□□□□ -0.99
VPS33A-209ENST00000544349 TRAV7A0A075B6U4 112 aa8.89□□□□□ -0.99
VPS33A-209ENST00000544349 TMEM258P61165 79 aa8.89□□□□□ -0.99
VPS33A-209ENST00000544349 PRLHP81277 87 aa8.89□□□□□ -0.99
VPS33A-209ENST00000544349 NREPQ16612 68 aa8.89□□□□□ -0.99
VPS33A-209ENST00000544349 C1orf137Q5JT78 98 aa8.89□□□□□ -0.99
VPS33A-209ENST00000544349 SVIPQ8NHG7 77 aa8.89□□□□□ -0.99
VPS33A-209ENST00000544349 HYDINQ4G0P3 5121 aa8.88□□□□□ -0.99
VPS33A-209ENST00000544349 BCE1O60756 84 aa8.87□□□□□ -0.99
VPS33A-209ENST00000544349 FRAS1Q86XX4 4008 aa8.87□□□□□ -0.99
VPS33A-209ENST00000544349 PLAC8Q9NZF1 115 aa8.87□□□□□ -0.99
VPS33A-209ENST00000544349 LCE6AA0A183 80 aa8.87□□□□□ -0.99
VPS33A-209ENST00000544349 SMIM29Q86T20 159 aa8.87□□□□□ -0.99
VPS33A-209ENST00000544349 KMT2CQ8NEZ4 4911 aaKnown RBP8.86□□□□□ -0.99
VPS33A-209ENST00000544349 A0A0G2JQZ4 141 aa8.86□□□□□ -0.99
VPS33A-209ENST00000544349 Q8NBF4 154 aa8.86□□□□□ -0.99
VPS33A-209ENST00000544349 H0Y9J4 135 aa8.84□□□□□ -0.99
VPS33A-209ENST00000544349 J3KT08 172 aa8.83□□□□□ -1
VPS33A-209ENST00000544349 SNURFQ9Y675 71 aa8.83□□□□□ -1
VPS33A-209ENST00000544349 OXTP01178 125 aa8.83□□□□□ -1
VPS33A-209ENST00000544349 HIGD2AQ9BW72 106 aa8.83□□□□□ -1
VPS33A-209ENST00000544349 SRRM2Q9UQ35 2752 aaKnown RBP8.82□□□□□ -1
VPS33A-209ENST00000544349 UBE2AP49459 152 aa8.81□□□□□ -1
VPS33A-209ENST00000544349 SPRR4Q96PI1 79 aa8.81□□□□□ -1
VPS33A-209ENST00000544349 H7BZZ5 65 aa8.8□□□□□ -1
VPS33A-209ENST00000544349 FAM30AQ9NZY2 134 aa8.8□□□□□ -1
VPS33A-209ENST00000544349 KLKP1Q107X0 134 aa8.8□□□□□ -1
VPS33A-209ENST00000544349 KRTAP13-1Q8IUC0 172 aa8.8□□□□□ -1
VPS33A-209ENST00000544349 DNAH11Q96DT5 4516 aa8.79□□□□□ -1
VPS33A-209ENST00000544349 RYR3Q15413 4870 aa8.79□□□□□ -1
VPS33A-209ENST00000544349 IGFL1Q6UW32 110 aa8.78□□□□□ -1
VPS33A-209ENST00000544349 KRTAP10-1P60331 282 aa8.78□□□□□ -1
VPS33A-209ENST00000544349 PSORS1C2Q9UIG4 136 aa8.78□□□□□ -1
VPS33A-209ENST00000544349 SACSQ9NZJ4 4579 aa8.78□□□□□ -1
VPS33A-209ENST00000544349 A0A1B0GW54 56 aa8.77□□□□□ -1.01
VPS33A-209ENST00000544349 FAT2Q9NYQ8 4349 aa8.77□□□□□ -1.01
VPS33A-209ENST00000544349 Q6ZSA8 131 aa8.77□□□□□ -1.01
VPS33A-209ENST00000544349 OCR1Q9BZK8 76 aa8.77□□□□□ -1.01
VPS33A-209ENST00000544349 F8WEM9 126 aa8.76□□□□□ -1.01
VPS33A-209ENST00000544349 DSCR10P59022 87 aa8.76□□□□□ -1.01
VPS33A-209ENST00000544349 CIRBP-AS1Q8TBR5 109 aa8.76□□□□□ -1.01
VPS33A-209ENST00000544349 DNAH5Q8TE73 4624 aa8.76□□□□□ -1.01
VPS33A-209ENST00000544349 FAM236DA0A1B0GTK5 79 aa8.75□□□□□ -1.01
VPS33A-209ENST00000544349 FAM236CP0DP71 79 aa8.75□□□□□ -1.01
VPS33A-209ENST00000544349 RPS28P62857 69 aaKnown RBP8.75□□□□□ -1.01
VPS33A-209ENST00000544349 LINC00336Q6ZUF6 198 aa8.75□□□□□ -1.01
VPS33A-209ENST00000544349 PKD1P98161 4303 aa8.74□□□□□ -1.01
VPS33A-209ENST00000544349 K7EQZ3 153 aa8.74□□□□□ -1.01
VPS33A-209ENST00000544349 SPRR1BP22528 89 aa8.72□□□□□ -1.01
VPS33A-209ENST00000544349 TMEM254Q8TBM7 123 aa8.72□□□□□ -1.01
VPS33A-209ENST00000544349 DNAH8Q96JB1 4490 aa8.72□□□□□ -1.01
VPS33A-209ENST00000544349 IGLV8-61A0A075B6I0 122 aa8.72□□□□□ -1.01
VPS33A-209ENST00000544349 DEFB116Q30KQ4 102 aa8.7□□□□□ -1.02
VPS33A-209ENST00000544349 ZNF861PO60384 105 aa8.69□□□□□ -1.02
VPS33A-209ENST00000544349 A0A087WSZ3 146 aa8.69□□□□□ -1.02
VPS33A-209ENST00000544349 A0A0U1RQV1 116 aa8.67□□□□□ -1.02
VPS33A-209ENST00000544349 A0A1B0GVY2 172 aa8.67□□□□□ -1.02
VPS33A-209ENST00000544349 IGLV7-43P04211 117 aa8.66□□□□□ -1.02
VPS33A-209ENST00000544349 ZNF706Q9Y5V0 76 aaPredicted RBP8.63□□□□□ -1.03
VPS33A-209ENST00000544349 RPL37AP61513 92 aaKnown RBP8.63□□□□□ -1.03
VPS33A-209ENST00000544349 LINC00483Q53H64 154 aa8.63□□□□□ -1.03
VPS33A-209ENST00000544349 NDUFC1O43677 76 aa8.62□□□□□ -1.03
VPS33A-209ENST00000544349 HCG22E2RYF7 251 aa8.62□□□□□ -1.03
VPS33A-209ENST00000544349 SERP1Q9Y6X1 66 aa8.62□□□□□ -1.03
VPS33A-209ENST00000544349 Q5XG85 94 aa8.61□□□□□ -1.03
VPS33A-209ENST00000544349 RYR2Q92736 4967 aa8.61□□□□□ -1.03
VPS33A-209ENST00000544349 WFDC13Q8IUB5 93 aa8.59□□□□□ -1.03
VPS33A-209ENST00000544349 C4orf26Q17RF5 130 aa8.56□□□□□ -1.04
VPS33A-209ENST00000544349 IGLV9-49A0A0B4J1Y8 123 aa8.56□□□□□ -1.04
VPS33A-209ENST00000544349 ANAPC11Q9NYG5 84 aa8.56□□□□□ -1.04
VPS33A-209ENST00000544349 LINC00472Q9H8W2 130 aa8.55□□□□□ -1.04
VPS33A-209ENST00000544349 BIRC6Q9NR09 4857 aa8.55□□□□□ -1.04
VPS33A-209ENST00000544349 ATP5EP56381 51 aaPredicted RBP8.54□□□□□ -1.04
VPS33A-209ENST00000544349 ZCCHC13Q8WW36 166 aaKnown RBP8.54□□□□□ -1.04
VPS33A-209ENST00000544349 LRP1BQ9NZR2 4599 aa8.53□□□□□ -1.04
VPS33A-209ENST00000544349 KRTAP29-1A8MX34 341 aaPredicted RBP8.53□□□□□ -1.04
VPS33A-209ENST00000544349 PKHD1P08F94 4074 aa8.52□□□□□ -1.05
VPS33A-209ENST00000544349 FP248Q71RG6 208 aaPredicted RBP8.5□□□□□ -1.05
VPS33A-209ENST00000544349 PRR15Q8IV56 129 aa8.5□□□□□ -1.05
VPS33A-209ENST00000544349 EPPK1P58107 5090 aaKnown RBP8.5□□□□□ -1.05
VPS33A-209ENST00000544349 A8MWP4 228 aa8.5□□□□□ -1.05
VPS33A-209ENST00000544349 MOBPQ13875 183 aa8.5□□□□□ -1.05
VPS33A-209ENST00000544349 FAM229BQ4G0N7 80 aa8.5□□□□□ -1.05
VPS33A-209ENST00000544349 HRCT1Q6UXD1 115 aa8.5□□□□□ -1.05
VPS33A-209ENST00000544349 DYNC1H1Q14204 4646 aaKnown RBP8.48□□□□□ -1.05
VPS33A-209ENST00000544349 CASC2Q6XLA1 102 aa8.47□□□□□ -1.05
VPS33A-209ENST00000544349 Q96NJ1 140 aa8.47□□□□□ -1.05
VPS33A-209ENST00000544349 C5orf47Q569G3 176 aa8.47□□□□□ -1.05
VPS33A-209ENST00000544349 SMR3BP02814 79 aaPredicted RBP8.46□□□□□ -1.06
VPS33A-209ENST00000544349 SMIM26A0A096LP01 95 aa8.44□□□□□ -1.06
VPS33A-209ENST00000544349 MMP24-AS1A0A0U1RRL7 71 aa8.44□□□□□ -1.06
VPS33A-209ENST00000544349 VPS13BQ7Z7G8 4022 aa8.43□□□□□ -1.06
VPS33A-209ENST00000544349 A0A087X002 238 aa8.42□□□□□ -1.06
VPS33A-209ENST00000544349 KRTAP1-4P0C5Y4 121 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms