RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 FCGBPQ9Y6R7 5405 aaPredicted RBP7.95□□□□□ -1.14
CLSTN3-213ENST00000541953 TRBV7-7A0A0K0K1E9 115 aa7.94□□□□□ -1.14
CLSTN3-213ENST00000541953 IFITM1P13164 125 aa7.94□□□□□ -1.14
CLSTN3-213ENST00000541953 KRTDAPP60985 99 aa7.94□□□□□ -1.14
CLSTN3-213ENST00000541953 A4D1N5 150 aa7.93□□□□□ -1.14
CLSTN3-213ENST00000541953 Q6ZQY7 126 aa7.92□□□□□ -1.14
CLSTN3-213ENST00000541953 LINC00575Q6W349 94 aa7.91□□□□□ -1.14
CLSTN3-213ENST00000541953 CLEC2BQ92478 149 aa7.91□□□□□ -1.14
CLSTN3-213ENST00000541953 NHP2Q9NX24 153 aaKnown RBP7.91□□□□□ -1.14
CLSTN3-213ENST00000541953 F8WEM9 126 aa7.9□□□□□ -1.14
CLSTN3-213ENST00000541953 ATP11AUNQ6ZP68 121 aa7.9□□□□□ -1.14
CLSTN3-213ENST00000541953 TRAV13-2A0A0B4J235 113 aa7.89□□□□□ -1.15
CLSTN3-213ENST00000541953 Q6ZVH6 145 aa7.88□□□□□ -1.15
CLSTN3-213ENST00000541953 COPS9Q8WXC6 57 aa7.88□□□□□ -1.15
CLSTN3-213ENST00000541953 Q6JHZ5 121 aa7.87□□□□□ -1.15
CLSTN3-213ENST00000541953 OCIAD2Q56VL3 154 aa7.86□□□□□ -1.15
CLSTN3-213ENST00000541953 Q96NJ1 140 aa7.86□□□□□ -1.15
CLSTN3-213ENST00000541953 hADV29S1A0JD25 119 aa7.85□□□□□ -1.15
CLSTN3-213ENST00000541953 H3BUT2 72 aa7.85□□□□□ -1.15
CLSTN3-213ENST00000541953 MT2AP02795 61 aa7.85□□□□□ -1.15
CLSTN3-213ENST00000541953 COA6Q5JTJ3 125 aaKnown RBP7.85□□□□□ -1.15
CLSTN3-213ENST00000541953 CFC1P0CG37 223 aa7.84□□□□□ -1.15
CLSTN3-213ENST00000541953 C20orf166-AS1Q96NR2 134 aa7.83□□□□□ -1.16
CLSTN3-213ENST00000541953 LCE2BO14633 110 aa7.82□□□□□ -1.16
CLSTN3-213ENST00000541953 C20orf202A1L168 122 aa7.81□□□□□ -1.16
CLSTN3-213ENST00000541953 A8MUU9 505 aa7.81□□□□□ -1.16
CLSTN3-213ENST00000541953 MT1FP04733 61 aa7.81□□□□□ -1.16
CLSTN3-213ENST00000541953 S100A1P23297 94 aa7.81□□□□□ -1.16
CLSTN3-213ENST00000541953 KRTAP16-1A8MUX0 517 aa7.8□□□□□ -1.16
CLSTN3-213ENST00000541953 LST1O00453 97 aa7.8□□□□□ -1.16
CLSTN3-213ENST00000541953 VAMP3Q15836 100 aa7.8□□□□□ -1.16
CLSTN3-213ENST00000541953 KRTAP19-1Q8IUB9 90 aa7.79□□□□□ -1.16
CLSTN3-213ENST00000541953 C12orf57Q99622 126 aa7.79□□□□□ -1.16
CLSTN3-213ENST00000541953 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.78□□□□□ -1.16
CLSTN3-213ENST00000541953 DSCR10P59022 87 aa7.75□□□□□ -1.17
CLSTN3-213ENST00000541953 KRTAP9-3Q9BYQ3 159 aa7.74□□□□□ -1.17
CLSTN3-213ENST00000541953 MACF1Q9UPN3 7388 aaKnown RBP7.73□□□□□ -1.17
CLSTN3-213ENST00000541953 SNHG12Q9BXW3 62 aa7.73□□□□□ -1.17
CLSTN3-213ENST00000541953 SYNE2Q8WXH0 6885 aaKnown RBP7.72□□□□□ -1.17
CLSTN3-213ENST00000541953 TRBV20-1A0A075B6N2 111 aa7.71□□□□□ -1.18
CLSTN3-213ENST00000541953 A0A087WSZ3 146 aa7.71□□□□□ -1.18
CLSTN3-213ENST00000541953 PPDPFLQ8WWR9 84 aa7.71□□□□□ -1.18
CLSTN3-213ENST00000541953 FAM218AQ96MZ4 157 aa7.7□□□□□ -1.18
CLSTN3-213ENST00000541953 HRES1P13985 223 aa7.69□□□□□ -1.18
CLSTN3-213ENST00000541953 MPLKIPQ8TAP9 179 aa7.69□□□□□ -1.18
CLSTN3-213ENST00000541953 SNRPEP62304 92 aaKnown RBP7.68□□□□□ -1.18
CLSTN3-213ENST00000541953 BVES-AS1Q5T3Y7 98 aa7.68□□□□□ -1.18
CLSTN3-213ENST00000541953 SS18L2Q9UHA2 77 aa7.68□□□□□ -1.18
CLSTN3-213ENST00000541953 TEN1Q86WV5 123 aa7.67□□□□□ -1.18
CLSTN3-213ENST00000541953 FAM236DA0A1B0GTK5 79 aa7.66□□□□□ -1.18
CLSTN3-213ENST00000541953 SCGB1D1O95968 90 aa7.66□□□□□ -1.18
CLSTN3-213ENST00000541953 FAM236CP0DP71 79 aa7.66□□□□□ -1.18
CLSTN3-213ENST00000541953 NOTCH2NLQ7Z3S9 236 aa7.66□□□□□ -1.18
CLSTN3-213ENST00000541953 NDUFV3P56181 108 aaKnown RBP7.65□□□□□ -1.18
CLSTN3-213ENST00000541953 KRTAP10-10P60014 251 aa7.65□□□□□ -1.18
CLSTN3-213ENST00000541953 HIST3H2BBQ8N257 126 aa7.65□□□□□ -1.18
CLSTN3-213ENST00000541953 HIST1H2BLQ99880 126 aa7.65□□□□□ -1.18
CLSTN3-213ENST00000541953 A0A1W2PNM2 257 aa7.64□□□□□ -1.19
CLSTN3-213ENST00000541953 SIGMAR1Q99720 223 aa7.64□□□□□ -1.19
CLSTN3-213ENST00000541953 HIST1H4GQ99525 98 aa7.63□□□□□ -1.19
CLSTN3-213ENST00000541953 HSBP1L1C9JCN9 74 aa7.6□□□□□ -1.19
CLSTN3-213ENST00000541953 H3BMG7 143 aa7.6□□□□□ -1.19
CLSTN3-213ENST00000541953 LINC00313P59037 77 aa7.58□□□□□ -1.2
CLSTN3-213ENST00000541953 DEFB116Q30KQ4 102 aa7.57□□□□□ -1.2
CLSTN3-213ENST00000541953 IGKV4-1P06312 121 aa7.56□□□□□ -1.2
CLSTN3-213ENST00000541953 COX8AP10176 69 aa7.56□□□□□ -1.2
CLSTN3-213ENST00000541953 A0A1B0GV72 72 aa7.55□□□□□ -1.2
CLSTN3-213ENST00000541953 RBM12B-AS1Q9P1G2 102 aa7.55□□□□□ -1.2
CLSTN3-213ENST00000541953 FABP2P12104 132 aa7.54□□□□□ -1.2
CLSTN3-213ENST00000541953 RAB37Q96AX2 223 aa7.54□□□□□ -1.2
CLSTN3-213ENST00000541953 H0YGX0 51 aa7.53□□□□□ -1.2
CLSTN3-213ENST00000541953 S100A2P29034 98 aa7.53□□□□□ -1.2
CLSTN3-213ENST00000541953 KRTAP19-6Q3LI70 58 aa7.53□□□□□ -1.2
CLSTN3-213ENST00000541953 A0A0B4J2C4 111 aa7.52□□□□□ -1.21
CLSTN3-213ENST00000541953 LINC00472Q9H8W2 130 aa7.51□□□□□ -1.21
CLSTN3-213ENST00000541953 DLEU1O43261 78 aa7.5□□□□□ -1.21
CLSTN3-213ENST00000541953 C2orf91Q6ZV80 131 aa7.5□□□□□ -1.21
CLSTN3-213ENST00000541953 C14orf144Q96I85 54 aa7.5□□□□□ -1.21
CLSTN3-213ENST00000541953 IGHV6-1A0A0B4J1U7 121 aa7.49□□□□□ -1.21
CLSTN3-213ENST00000541953 S100A6P06703 90 aa7.48□□□□□ -1.21
CLSTN3-213ENST00000541953 TRBV7-4A0A0J9YYF1 115 aa7.47□□□□□ -1.21
CLSTN3-213ENST00000541953 TRIAP1O43715 76 aa7.47□□□□□ -1.21
CLSTN3-213ENST00000541953 SNCGO76070 127 aa7.46□□□□□ -1.22
CLSTN3-213ENST00000541953 A0A1B0GX51 115 aa7.45□□□□□ -1.22
CLSTN3-213ENST00000541953 ANKRD29Q8N6D5 301 aa7.45□□□□□ -1.22
CLSTN3-213ENST00000541953 HIGD1BQ9P298 99 aa7.45□□□□□ -1.22
CLSTN3-213ENST00000541953 FXYD2P54710 66 aa7.44□□□□□ -1.22
CLSTN3-213ENST00000541953 PAM16Q9Y3D7 125 aa7.43□□□□□ -1.22
CLSTN3-213ENST00000541953 CEND1Q8N111 149 aa7.42□□□□□ -1.22
CLSTN3-213ENST00000541953 PRO1854Q9UHT4 67 aa7.42□□□□□ -1.22
CLSTN3-213ENST00000541953 CCKP06307 115 aa7.41□□□□□ -1.22
CLSTN3-213ENST00000541953 A0A1B0GVX0 72 aa7.4□□□□□ -1.22
CLSTN3-213ENST00000541953 SPINK7P58062 85 aa7.4□□□□□ -1.22
CLSTN3-213ENST00000541953 SPATA45Q537H7 98 aa7.4□□□□□ -1.22
CLSTN3-213ENST00000541953 ZCCHC13Q8WW36 166 aaKnown RBP7.4□□□□□ -1.22
CLSTN3-213ENST00000541953 TRACP01848 142 aa7.39□□□□□ -1.23
CLSTN3-213ENST00000541953 Q8N9P0 234 aaPredicted RBP7.39□□□□□ -1.23
CLSTN3-213ENST00000541953 ORMDL1Q9P0S3 153 aa7.39□□□□□ -1.23
CLSTN3-213ENST00000541953 K7ERJ3 54 aa7.37□□□□□ -1.23
CLSTN3-213ENST00000541953 GHRHP01286 108 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms