RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 TTTY13Q9BZ97 58 aa6.29□□□□□ -1.4
SNHG1-216ENST00000541416 LST1O00453 97 aa6.28□□□□□ -1.4
SNHG1-216ENST00000541416 SMIM11BQ8TCY0 68 aa6.28□□□□□ -1.4
SNHG1-216ENST00000541416 IGFL1Q6UW32 110 aa6.27□□□□□ -1.41
SNHG1-216ENST00000541416 hADV29S1A0JD25 119 aa6.25□□□□□ -1.41
SNHG1-216ENST00000541416 OCIAD2Q56VL3 154 aa6.25□□□□□ -1.41
SNHG1-216ENST00000541416 LINC00575Q6W349 94 aa6.25□□□□□ -1.41
SNHG1-216ENST00000541416 Q6ZQY7 126 aa6.25□□□□□ -1.41
SNHG1-216ENST00000541416 MUSTN1Q8IVN3 82 aa6.25□□□□□ -1.41
SNHG1-216ENST00000541416 SS18L2Q9UHA2 77 aa6.25□□□□□ -1.41
SNHG1-216ENST00000541416 SCGB1D1O95968 90 aa6.24□□□□□ -1.41
SNHG1-216ENST00000541416 FAM236DA0A1B0GTK5 79 aa6.23□□□□□ -1.41
SNHG1-216ENST00000541416 FAM236CP0DP71 79 aa6.23□□□□□ -1.41
SNHG1-216ENST00000541416 PPDPFLQ8WWR9 84 aa6.23□□□□□ -1.41
SNHG1-216ENST00000541416 C20orf166-AS1Q96NR2 134 aa6.23□□□□□ -1.41
SNHG1-216ENST00000541416 LINC00846Q9NV44 126 aa6.23□□□□□ -1.41
SNHG1-216ENST00000541416 SNHG12Q9BXW3 62 aa6.22□□□□□ -1.41
SNHG1-216ENST00000541416 COLCA2A8K830 154 aa6.21□□□□□ -1.42
SNHG1-216ENST00000541416 A8MUU9 505 aa6.21□□□□□ -1.42
SNHG1-216ENST00000541416 C3orf79P0CE67 100 aa6.21□□□□□ -1.42
SNHG1-216ENST00000541416 KRTDAPP60985 99 aa6.2□□□□□ -1.42
SNHG1-216ENST00000541416 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.2□□□□□ -1.42
SNHG1-216ENST00000541416 KRTAP19-1Q8IUB9 90 aa6.2□□□□□ -1.42
SNHG1-216ENST00000541416 MT2AP02795 61 aa6.19□□□□□ -1.42
SNHG1-216ENST00000541416 RBM12B-AS1Q9P1G2 102 aa6.19□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BKO60814 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BJP06899 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BOP23527 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BBP33778 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BDP58876 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BCP62807 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST2H2BEQ16778 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BHQ93079 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BNQ99877 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 HIST1H2BMQ99879 126 aa6.18□□□□□ -1.42
SNHG1-216ENST00000541416 KRTAP10-10P60014 251 aa6.17□□□□□ -1.42
SNHG1-216ENST00000541416 ANKRD39Q53RE8 183 aa6.17□□□□□ -1.42
SNHG1-216ENST00000541416 MACF1Q9UPN3 7388 aaKnown RBP6.16□□□□□ -1.42
SNHG1-216ENST00000541416 SNCGO76070 127 aa6.16□□□□□ -1.42
SNHG1-216ENST00000541416 BVES-AS1Q5T3Y7 98 aa6.16□□□□□ -1.42
SNHG1-216ENST00000541416 H3BUT2 72 aa6.15□□□□□ -1.42
SNHG1-216ENST00000541416 SNRPEP62304 92 aaKnown RBP6.15□□□□□ -1.42
SNHG1-216ENST00000541416 TEN1Q86WV5 123 aa6.15□□□□□ -1.42
SNHG1-216ENST00000541416 C12orf57Q99622 126 aa6.15□□□□□ -1.42
SNHG1-216ENST00000541416 LCE2BO14633 110 aa6.14□□□□□ -1.43
SNHG1-216ENST00000541416 MT1FP04733 61 aa6.13□□□□□ -1.43
SNHG1-216ENST00000541416 ATOH7Q8N100 152 aa6.12□□□□□ -1.43
SNHG1-216ENST00000541416 SYNE2Q8WXH0 6885 aaKnown RBP6.12□□□□□ -1.43
SNHG1-216ENST00000541416 KRTAP9-3Q9BYQ3 159 aa6.12□□□□□ -1.43
SNHG1-216ENST00000541416 DSCR10P59022 87 aa6.11□□□□□ -1.43
SNHG1-216ENST00000541416 MTURNQ8N3F0 131 aa6.11□□□□□ -1.43
SNHG1-216ENST00000541416 A0A087WSZ3 146 aa6.1□□□□□ -1.43
SNHG1-216ENST00000541416 LINC00313P59037 77 aa6.1□□□□□ -1.43
SNHG1-216ENST00000541416 SIGMAR1Q99720 223 aa6.1□□□□□ -1.43
SNHG1-216ENST00000541416 GHRHP01286 108 aa6.09□□□□□ -1.43
SNHG1-216ENST00000541416 COA6Q5JTJ3 125 aaKnown RBP6.08□□□□□ -1.44
SNHG1-216ENST00000541416 HSBP1L1C9JCN9 74 aa6.07□□□□□ -1.44
SNHG1-216ENST00000541416 NDUFV3P56181 108 aaKnown RBP6.07□□□□□ -1.44
SNHG1-216ENST00000541416 A6NJY4 79 aa6.06□□□□□ -1.44
SNHG1-216ENST00000541416 MPLKIPQ8TAP9 179 aa6.06□□□□□ -1.44
SNHG1-216ENST00000541416 HRES1P13985 223 aa6.05□□□□□ -1.44
SNHG1-216ENST00000541416 KRTAP16-1A8MUX0 517 aa6.04□□□□□ -1.44
SNHG1-216ENST00000541416 H0YGX0 51 aa6.04□□□□□ -1.44
SNHG1-216ENST00000541416 H3BMG7 143 aa6.04□□□□□ -1.44
SNHG1-216ENST00000541416 IGKV4-1P06312 121 aa6.03□□□□□ -1.44
SNHG1-216ENST00000541416 KRTAP19-6Q3LI70 58 aa6.03□□□□□ -1.44
SNHG1-216ENST00000541416 HIST1H4GQ99525 98 aa6.03□□□□□ -1.44
SNHG1-216ENST00000541416 NOTCH2NLQ7Z3S9 236 aa6□□□□□ -1.45
SNHG1-216ENST00000541416 FABP2P12104 132 aa5.99□□□□□ -1.45
SNHG1-216ENST00000541416 RAB37Q96AX2 223 aa5.99□□□□□ -1.45
SNHG1-216ENST00000541416 TRBV7-4A0A0J9YYF1 115 aa5.97□□□□□ -1.45
SNHG1-216ENST00000541416 A0A1B0GX51 115 aa5.97□□□□□ -1.45
SNHG1-216ENST00000541416 A8MWP4 228 aa5.97□□□□□ -1.45
SNHG1-216ENST00000541416 IGHV6-1A0A0B4J1U7 121 aa5.96□□□□□ -1.46
SNHG1-216ENST00000541416 A0A1W2PNM2 257 aa5.96□□□□□ -1.46
SNHG1-216ENST00000541416 ANKRD29Q8N6D5 301 aa5.96□□□□□ -1.46
SNHG1-216ENST00000541416 S100A2P29034 98 aa5.95□□□□□ -1.46
SNHG1-216ENST00000541416 KRTAP6-3Q3LI67 103 aa5.95□□□□□ -1.46
SNHG1-216ENST00000541416 FAM218AQ96MZ4 157 aa5.94□□□□□ -1.46
SNHG1-216ENST00000541416 C8orf87E5RJ46 101 aa5.93□□□□□ -1.46
SNHG1-216ENST00000541416 H3BQ85 93 aa5.93□□□□□ -1.46
SNHG1-216ENST00000541416 A0A0B4J2C4 111 aa5.92□□□□□ -1.46
SNHG1-216ENST00000541416 SMCPP49901 116 aaPredicted RBP5.92□□□□□ -1.46
SNHG1-216ENST00000541416 DEFB116Q30KQ4 102 aa5.92□□□□□ -1.46
SNHG1-216ENST00000541416 DNAL4O96015 105 aa5.91□□□□□ -1.46
SNHG1-216ENST00000541416 TRACP01848 142 aa5.91□□□□□ -1.46
SNHG1-216ENST00000541416 SPINK7P58062 85 aa5.91□□□□□ -1.46
SNHG1-216ENST00000541416 ZCCHC13Q8WW36 166 aaKnown RBP5.91□□□□□ -1.46
SNHG1-216ENST00000541416 LINC00472Q9H8W2 130 aa5.91□□□□□ -1.46
SNHG1-216ENST00000541416 COX8AP10176 69 aa5.9□□□□□ -1.46
SNHG1-216ENST00000541416 CCKP06307 115 aa5.89□□□□□ -1.47
SNHG1-216ENST00000541416 HIST1H2BLQ99880 126 aa5.89□□□□□ -1.47
SNHG1-216ENST00000541416 A0A1B0GVX0 72 aa5.88□□□□□ -1.47
SNHG1-216ENST00000541416 DLEU1O43261 78 aa5.88□□□□□ -1.47
SNHG1-216ENST00000541416 HIST3H2BBQ8N257 126 aa5.88□□□□□ -1.47
SNHG1-216ENST00000541416 ORMDL1Q9P0S3 153 aa5.88□□□□□ -1.47
SNHG1-216ENST00000541416 TMEM238LA0A1B0GVL6 79 aa5.87□□□□□ -1.47
SNHG1-216ENST00000541416 Q8N9P0 234 aaPredicted RBP5.87□□□□□ -1.47
SNHG1-216ENST00000541416 A0A1B0GV72 72 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms