RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, human

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-209	ENST00000540747	IGLV5-37	A0A075B6J1	123 aa		4.19	□□□□□ -1.74
YBX3-209	ENST00000540747	DNAL4	O96015	105 aa		4.19	□□□□□ -1.74
YBX3-209	ENST00000540747	CXCL5	P42830	114 aa		4.19	□□□□□ -1.74
YBX3-209	ENST00000540747	LINC00167	Q96N53	147 aa		4.19	□□□□□ -1.74
YBX3-209	ENST00000540747	CRCT1	Q9UGL9	99 aa		4.19	□□□□□ -1.74
YBX3-209	ENST00000540747	IGKV2-28	A0A075B6P5	120 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747	FAM240A	A0A1B0GVK7	77 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747	IGKV2D-28	P01615	120 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747		Q6Q795	121 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747	LINC00337	Q8N6G1	96 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747	SMIM11B	Q8TCY0	68 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747	KRTAP4-1	Q9BYQ7	146 aa		4.18	□□□□□ -1.74
YBX3-209	ENST00000540747	RPL37AP8	A6NKH3	93 aa		4.17	□□□□□ -1.74
YBX3-209	ENST00000540747	COX17	Q14061	63 aa		4.17	□□□□□ -1.74
YBX3-209	ENST00000540747	ANAPC13	Q9BS18	74 aa		4.17	□□□□□ -1.74
YBX3-209	ENST00000540747	NDUFC2	O95298	119 aa		4.16	□□□□□ -1.74
YBX3-209	ENST00000540747	ASB16-AS1	Q495Z4	193 aa		4.16	□□□□□ -1.74
YBX3-209	ENST00000540747	FAM218A	Q96MZ4	157 aa		4.16	□□□□□ -1.74
YBX3-209	ENST00000540747		A0A1B0GX51	115 aa		4.15	□□□□□ -1.75
YBX3-209	ENST00000540747	KRTAP13-3	Q3SY46	172 aa		4.15	□□□□□ -1.75
YBX3-209	ENST00000540747	TMEM126A	Q9H061	195 aa		4.15	□□□□□ -1.75
YBX3-209	ENST00000540747	UBE2A	P49459	152 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	NDUFV3	P56181	108 aa	Known RBP	4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	S100A7L2	Q5SY68	101 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	LCE2C	Q5TA81	110 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	GAGE2A	Q6NT46	116 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	FP248	Q71RG6	208 aa	Predicted RBP	4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	LINC00643	Q86TS7	51 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	C3orf22	Q8N5N4	141 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	ORMDL1	Q9P0S3	153 aa		4.14	□□□□□ -1.75
YBX3-209	ENST00000540747	IMUP	Q9GZP8	106 aa		4.13	□□□□□ -1.75
YBX3-209	ENST00000540747		M0R378	163 aa		4.12	□□□□□ -1.75
YBX3-209	ENST00000540747	VPREB1	P12018	145 aa		4.12	□□□□□ -1.75
YBX3-209	ENST00000540747	LINC01547	P58512	204 aa	Predicted RBP	4.12	□□□□□ -1.75
YBX3-209	ENST00000540747	PRLH	P81277	87 aa		4.12	□□□□□ -1.75
YBX3-209	ENST00000540747	KRTAP19-2	Q3LHN2	52 aa		4.12	□□□□□ -1.75
YBX3-209	ENST00000540747	TRBV7-7	A0A0K0K1E9	115 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747	JMJD7-PLA2G4B	H0Y9G9	81 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747	TMEM256-PLSCR3	K7ERE1	68 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747	NCR3	O14931	201 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747	SPAG11A	Q6PDA7	123 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747	NKAPP1	Q8N9T2	125 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747		Q8NDZ9	215 aa		4.11	□□□□□ -1.75
YBX3-209	ENST00000540747		H3BQ85	93 aa		4.1	□□□□□ -1.75
YBX3-209	ENST00000540747	C14orf132	Q9NPU4	83 aa		4.1	□□□□□ -1.75
YBX3-209	ENST00000540747	GHRH	P01286	108 aa		4.09	□□□□□ -1.75
YBX3-209	ENST00000540747	C6orf99	Q4VX62	202 aa		4.09	□□□□□ -1.75
YBX3-209	ENST00000540747	FAM19A1	Q7Z5A9	133 aa		4.09	□□□□□ -1.75
YBX3-209	ENST00000540747	OBSCN-AS1	Q96MR7	158 aa		4.09	□□□□□ -1.75
YBX3-209	ENST00000540747	SPRR4	Q96PI1	79 aa		4.09	□□□□□ -1.75
YBX3-209	ENST00000540747	hADV29S1	A0JD25	119 aa		4.08	□□□□□ -1.76
YBX3-209	ENST00000540747	CCK	P06307	115 aa		4.08	□□□□□ -1.76
YBX3-209	ENST00000540747	SEC61B	P60468	96 aa	Known RBP	4.08	□□□□□ -1.76
YBX3-209	ENST00000540747		Q6JHZ5	121 aa		4.08	□□□□□ -1.76
YBX3-209	ENST00000540747	LINC00575	Q6W349	94 aa		4.08	□□□□□ -1.76
YBX3-209	ENST00000540747	XP32	Q5T750	250 aa		4.07	□□□□□ -1.76
YBX3-209	ENST00000540747	SMCR5	Q8TEV8	140 aa		4.07	□□□□□ -1.76
YBX3-209	ENST00000540747	IGKV3D-7	A0A0C4DH55	119 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	FAM236A	A0A1B0GUQ0	79 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	FAM236B	A0A1B0GV22	79 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747		B5MCH6	92 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	CCDC179	H3BU77	68 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	IGLV6-57	P01721	117 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	COX7B	P24311	80 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	MT1H	P80294	61 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	RBM3	P98179	157 aa	Known RBP	4.06	□□□□□ -1.76
YBX3-209	ENST00000540747		Q8NBF4	154 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	LAMTOR3	Q9UHA4	124 aa		4.06	□□□□□ -1.76
YBX3-209	ENST00000540747	TRAV23DV6	A0A075B6W5	121 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	TRBV10-3	A0A0K0K1G6	114 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	SPINK1	P00995	79 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	PDE6G	P18545	87 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	RPS29	P62273	56 aa	Known RBP	4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	LINC00483	Q53H64	154 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	HIGD2A	Q9BW72	106 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	LINC00846	Q9NV44	126 aa		4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	FLG	P20930	4061 aa	Predicted RBP	4.05	□□□□□ -1.76
YBX3-209	ENST00000540747	TRBV7-6	A0A0J9YX20	115 aa		4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	LOR	P23490	312 aa	Predicted RBP	4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	SPRR1A	P35321	89 aa		4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	4.04	□□□□□ -1.76
YBX3-209	ENST00000540747		Q8N377	158 aa		4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	DSCR8	Q96T75	97 aa		4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	UBL5	Q9BZL1	73 aa		4.04	□□□□□ -1.76
YBX3-209	ENST00000540747	ATOX1	O00244	68 aa		4.03	□□□□□ -1.76
YBX3-209	ENST00000540747	ZNF73	O43830	326 aa	Predicted RBP	4.03	□□□□□ -1.76
YBX3-209	ENST00000540747	ATP5EP2	Q5VTU8	51 aa		4.03	□□□□□ -1.76
YBX3-209	ENST00000540747	ZNF706	Q9Y5V0	76 aa	Predicted RBP	4.03	□□□□□ -1.76
YBX3-209	ENST00000540747	LOC110117498	A0A087WWA1	95 aa		4.02	□□□□□ -1.77
YBX3-209	ENST00000540747	UQCRQ	O14949	82 aa		4.02	□□□□□ -1.77
YBX3-209	ENST00000540747	C4orf48	Q5BLP8	95 aa		4.02	□□□□□ -1.77
YBX3-209	ENST00000540747	C9orf153	Q5TBE3	101 aa		4.02	□□□□□ -1.77
YBX3-209	ENST00000540747		Q6ZQY7	126 aa		4.02	□□□□□ -1.77
YBX3-209	ENST00000540747	SS18L2	Q9UHA2	77 aa		4.02	□□□□□ -1.77
YBX3-209	ENST00000540747	PRY	O14603	147 aa		4.01	□□□□□ -1.77
YBX3-209	ENST00000540747	COX7C	P15954	63 aa		4.01	□□□□□ -1.77
YBX3-209	ENST00000540747	KRTAP10-6	P60371	365 aa	Predicted RBP	4.01	□□□□□ -1.77
YBX3-209	ENST00000540747	HIST1H4A	P62805	103 aa	Known RBP	4.01	□□□□□ -1.77
YBX3-209	ENST00000540747	KCNQ1DN	Q9H478	68 aa		4.01	□□□□□ -1.77

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