RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 FAM30AQ9NZY2 134 aa10.03□□□□□ -0.8
CHMP1A-202ENST00000535997 A0A0G2JQZ4 141 aa10.02□□□□□ -0.81
CHMP1A-202ENST00000535997 C9orf163Q8N9P6 203 aa10.02□□□□□ -0.81
CHMP1A-202ENST00000535997 DYNC2H1Q8NCM8 4307 aaKnown RBP10.01□□□□□ -0.81
CHMP1A-202ENST00000535997 UBE2AP49459 152 aa10□□□□□ -0.81
CHMP1A-202ENST00000535997 HRCT1Q6UXD1 115 aa10□□□□□ -0.81
CHMP1A-202ENST00000535997 PHF5AQ7RTV0 110 aaKnown RBP10□□□□□ -0.81
CHMP1A-202ENST00000535997 PKIGQ9Y2B9 76 aa10□□□□□ -0.81
CHMP1A-202ENST00000535997 SMIM26A0A096LP01 95 aa10□□□□□ -0.81
CHMP1A-202ENST00000535997 CHTF8P0CG12 524 aa10□□□□□ -0.81
CHMP1A-202ENST00000535997 SPRR1BP22528 89 aa10□□□□□ -0.81
CHMP1A-202ENST00000535997 KRTAP11-1Q8IUC1 163 aa9.99□□□□□ -0.81
CHMP1A-202ENST00000535997 TENM2Q9NT68 2774 aa9.99□□□□□ -0.81
CHMP1A-202ENST00000535997 HCG22E2RYF7 251 aa9.99□□□□□ -0.81
CHMP1A-202ENST00000535997 A0A087WSZ3 146 aa9.98□□□□□ -0.81
CHMP1A-202ENST00000535997 LRCOL1A6NCL2 159 aa9.98□□□□□ -0.81
CHMP1A-202ENST00000535997 LINC00474Q9P2X8 69 aa9.98□□□□□ -0.81
CHMP1A-202ENST00000535997 B9D2Q9BPU9 175 aa9.96□□□□□ -0.81
CHMP1A-202ENST00000535997 DNAH7Q8WXX0 4024 aa9.95□□□□□ -0.82
CHMP1A-202ENST00000535997 NBDYA0A0U1RRE5 68 aa9.95□□□□□ -0.82
CHMP1A-202ENST00000535997 SRRM2Q9UQ35 2752 aaKnown RBP9.95□□□□□ -0.82
CHMP1A-202ENST00000535997 PLECQ15149 4684 aaKnown RBP9.95□□□□□ -0.82
CHMP1A-202ENST00000535997 CSMD3Q7Z407 3707 aa9.94□□□□□ -0.82
CHMP1A-202ENST00000535997 DEFB116Q30KQ4 102 aa9.94□□□□□ -0.82
CHMP1A-202ENST00000535997 FP248Q71RG6 208 aaPredicted RBP9.93□□□□□ -0.82
CHMP1A-202ENST00000535997 ZCCHC13Q8WW36 166 aaKnown RBP9.93□□□□□ -0.82
CHMP1A-202ENST00000535997 NUPR2A6NF83 97 aa9.9□□□□□ -0.82
CHMP1A-202ENST00000535997 Q6ZRN7 208 aaPredicted RBP9.9□□□□□ -0.82
CHMP1A-202ENST00000535997 MDFIQ99750 246 aa9.9□□□□□ -0.83
CHMP1A-202ENST00000535997 WFDC13Q8IUB5 93 aa9.87□□□□□ -0.83
CHMP1A-202ENST00000535997 KRTAP13-1Q8IUC0 172 aa9.87□□□□□ -0.83
CHMP1A-202ENST00000535997 LINC00472Q9H8W2 130 aa9.87□□□□□ -0.83
CHMP1A-202ENST00000535997 PANO1I0J062 215 aa9.86□□□□□ -0.83
CHMP1A-202ENST00000535997 KRTAP29-1A8MX34 341 aaPredicted RBP9.86□□□□□ -0.83
CHMP1A-202ENST00000535997 RPL37AP61513 92 aaKnown RBP9.86□□□□□ -0.83
CHMP1A-202ENST00000535997 PRR15Q8IV56 129 aa9.86□□□□□ -0.83
CHMP1A-202ENST00000535997 A8MWP4 228 aa9.84□□□□□ -0.83
CHMP1A-202ENST00000535997 MP68P56378 58 aa9.82□□□□□ -0.84
CHMP1A-202ENST00000535997 SPACA4Q8TDM5 124 aa9.82□□□□□ -0.84
CHMP1A-202ENST00000535997 NDUFB1O75438 58 aa9.82□□□□□ -0.84
CHMP1A-202ENST00000535997 FAM229BQ4G0N7 80 aa9.82□□□□□ -0.84
CHMP1A-202ENST00000535997 CASC2Q6XLA1 102 aa9.81□□□□□ -0.84
CHMP1A-202ENST00000535997 PRO0628Q9UI54 55 aa9.8□□□□□ -0.84
CHMP1A-202ENST00000535997 LINC00336Q6ZUF6 198 aa9.8□□□□□ -0.84
CHMP1A-202ENST00000535997 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.8□□□□□ -0.84
CHMP1A-202ENST00000535997 hDV103S1A0JD37 113 aa9.79□□□□□ -0.84
CHMP1A-202ENST00000535997 VPS13DQ5THJ4 4388 aa9.78□□□□□ -0.84
CHMP1A-202ENST00000535997 A0A087WTM6 91 aa9.76□□□□□ -0.85
CHMP1A-202ENST00000535997 C1orf64Q8NEQ6 169 aa9.76□□□□□ -0.85
CHMP1A-202ENST00000535997 CYP4F30PQ9H0H9 118 aa9.76□□□□□ -0.85
CHMP1A-202ENST00000535997 H3BPC8 53 aa9.76□□□□□ -0.85
CHMP1A-202ENST00000535997 STARD9Q9P2P6 4700 aa9.75□□□□□ -0.85
CHMP1A-202ENST00000535997 TRAV22A0A0B4J277 110 aa9.75□□□□□ -0.85
CHMP1A-202ENST00000535997 LINC00483Q53H64 154 aa9.75□□□□□ -0.85
CHMP1A-202ENST00000535997 LINC00208Q96KT6 92 aa9.75□□□□□ -0.85
CHMP1A-202ENST00000535997 MPLKIPQ8TAP9 179 aa9.74□□□□□ -0.85
CHMP1A-202ENST00000535997 IGLV9-49A0A0B4J1Y8 123 aa9.72□□□□□ -0.85
CHMP1A-202ENST00000535997 ZNF706Q9Y5V0 76 aaPredicted RBP9.72□□□□□ -0.85
CHMP1A-202ENST00000535997 HECTD4Q9Y4D8 3996 aa9.71□□□□□ -0.85
CHMP1A-202ENST00000535997 H0Y9P7 68 aa9.71□□□□□ -0.85
CHMP1A-202ENST00000535997 MMP24-AS1A0A0U1RRL7 71 aa9.7□□□□□ -0.86
CHMP1A-202ENST00000535997 RTL8CO15255 209 aa9.69□□□□□ -0.86
CHMP1A-202ENST00000535997 Q96NJ1 140 aa9.69□□□□□ -0.86
CHMP1A-202ENST00000535997 PSORS1C2Q9UIG4 136 aa9.68□□□□□ -0.86
CHMP1A-202ENST00000535997 IGLV5-52A0A0A0MRZ9 124 aa9.68□□□□□ -0.86
CHMP1A-202ENST00000535997 SPANXA2-OT1Q8N9U9 137 aa9.68□□□□□ -0.86
CHMP1A-202ENST00000535997 PRKDCP78527 4128 aaKnown RBP9.67□□□□□ -0.86
CHMP1A-202ENST00000535997 PLAC8Q9NZF1 115 aa9.67□□□□□ -0.86
CHMP1A-202ENST00000535997 PRR4Q16378 134 aa9.67□□□□□ -0.86
CHMP1A-202ENST00000535997 Q6ZR54 194 aa9.67□□□□□ -0.86
CHMP1A-202ENST00000535997 WWC2-AS2Q96NR7 200 aa9.66□□□□□ -0.86
CHMP1A-202ENST00000535997 Q1T7F1 81 aa9.66□□□□□ -0.86
CHMP1A-202ENST00000535997 ZNF861PO60384 105 aa9.65□□□□□ -0.86
CHMP1A-202ENST00000535997 ASB16-AS1Q495Z4 193 aa9.65□□□□□ -0.86
CHMP1A-202ENST00000535997 MOBPQ13875 183 aa9.64□□□□□ -0.87
CHMP1A-202ENST00000535997 DNAH2Q9P225 4427 aa9.64□□□□□ -0.87
CHMP1A-202ENST00000535997 DNAH17Q9UFH2 4485 aa9.63□□□□□ -0.87
CHMP1A-202ENST00000535997 KMT2AQ03164 3969 aa9.63□□□□□ -0.87
CHMP1A-202ENST00000535997 TP53AIP1Q9HCN2 124 aa9.63□□□□□ -0.87
CHMP1A-202ENST00000535997 DNAH8Q96JB1 4490 aa9.62□□□□□ -0.87
CHMP1A-202ENST00000535997 BRK1Q8WUW1 75 aa9.6□□□□□ -0.87
CHMP1A-202ENST00000535997 C8orf17Q9NRJ1 99 aa9.6□□□□□ -0.87
CHMP1A-202ENST00000535997 FRAS1Q86XX4 4008 aa9.58□□□□□ -0.88
CHMP1A-202ENST00000535997 A0A1B0GVX0 72 aa9.58□□□□□ -0.88
CHMP1A-202ENST00000535997 ANAPC11Q9NYG5 84 aa9.57□□□□□ -0.88
CHMP1A-202ENST00000535997 C1orf134Q5TEV5 83 aa9.57□□□□□ -0.88
CHMP1A-202ENST00000535997 CDK2AP2O75956 126 aa9.56□□□□□ -0.88
CHMP1A-202ENST00000535997 TGP01266 2768 aa9.55□□□□□ -0.88
CHMP1A-202ENST00000535997 IGHV6-1A0A0B4J1U7 121 aa9.55□□□□□ -0.88
CHMP1A-202ENST00000535997 V9GYY9 64 aa9.54□□□□□ -0.88
CHMP1A-202ENST00000535997 IGLV7-46A0A075B6I9 117 aa9.53□□□□□ -0.88
CHMP1A-202ENST00000535997 IGLV7-43P04211 117 aa9.52□□□□□ -0.89
CHMP1A-202ENST00000535997 MEGF8Q7Z7M0 2845 aa9.51□□□□□ -0.89
CHMP1A-202ENST00000535997 FBN3Q75N90 2809 aa9.51□□□□□ -0.89
CHMP1A-202ENST00000535997 MRPL34Q9BQ48 92 aaKnown RBP9.51□□□□□ -0.89
CHMP1A-202ENST00000535997 NDUFS5O43920 106 aa9.49□□□□□ -0.89
CHMP1A-202ENST00000535997 PSPHP1O15172 72 aa9.47□□□□□ -0.89
CHMP1A-202ENST00000535997 CD164Q04900 197 aa9.47□□□□□ -0.89
CHMP1A-202ENST00000535997 A0A087X002 238 aa9.45□□□□□ -0.9
CHMP1A-202ENST00000535997 NOTCH2NLQ7Z3S9 236 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms