RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.62□□□□□ -1.03
CPSF1-206ENST00000531480 C9JAW5 83 aa8.61□□□□□ -1.03
CPSF1-206ENST00000531480 PPDPFLQ8WWR9 84 aa8.61□□□□□ -1.03
CPSF1-206ENST00000531480 HIGD2AQ9BW72 106 aa8.61□□□□□ -1.03
CPSF1-206ENST00000531480 FAM229BQ4G0N7 80 aa8.6□□□□□ -1.03
CPSF1-206ENST00000531480 PRR26Q8N8Z3 221 aa8.59□□□□□ -1.03
CPSF1-206ENST00000531480 SPRR4Q96PI1 79 aa8.59□□□□□ -1.03
CPSF1-206ENST00000531480 ERC2-IT1O76042 136 aa8.58□□□□□ -1.04
CPSF1-206ENST00000531480 BAALC-AS2P0C853 105 aa8.58□□□□□ -1.04
CPSF1-206ENST00000531480 C21orf62-AS1Q17RA5 79 aa8.58□□□□□ -1.04
CPSF1-206ENST00000531480 ANKRD29Q8N6D5 301 aa8.58□□□□□ -1.04
CPSF1-206ENST00000531480 A0A087X002 238 aa8.57□□□□□ -1.04
CPSF1-206ENST00000531480 ZNF706Q9Y5V0 76 aaPredicted RBP8.57□□□□□ -1.04
CPSF1-206ENST00000531480 UBR4Q5T4S7 5183 aa8.57□□□□□ -1.04
CPSF1-206ENST00000531480 LINC00483Q53H64 154 aa8.56□□□□□ -1.04
CPSF1-206ENST00000531480 CRYGAP11844 174 aa8.55□□□□□ -1.04
CPSF1-206ENST00000531480 FAM218AQ96MZ4 157 aa8.55□□□□□ -1.04
CPSF1-206ENST00000531480 ANAPC11Q9NYG5 84 aa8.55□□□□□ -1.04
CPSF1-206ENST00000531480 J3QR89 54 aa8.54□□□□□ -1.04
CPSF1-206ENST00000531480 KRTAP13-2Q52LG2 175 aa8.54□□□□□ -1.04
CPSF1-206ENST00000531480 JMJD7-PLA2G4BH0Y9G9 81 aa8.53□□□□□ -1.04
CPSF1-206ENST00000531480 Q6ZQY7 126 aa8.53□□□□□ -1.04
CPSF1-206ENST00000531480 TEX49A0A1B0GTD5 131 aa8.51□□□□□ -1.05
CPSF1-206ENST00000531480 SPRR1BP22528 89 aa8.5□□□□□ -1.05
CPSF1-206ENST00000531480 TEN1Q86WV5 123 aa8.5□□□□□ -1.05
CPSF1-206ENST00000531480 LAMTOR3Q9UHA4 124 aa8.5□□□□□ -1.05
CPSF1-206ENST00000531480 PDE6GP18545 87 aa8.49□□□□□ -1.05
CPSF1-206ENST00000531480 PRO0461Q9UI25 63 aa8.49□□□□□ -1.05
CPSF1-206ENST00000531480 F8WEM9 126 aa8.48□□□□□ -1.05
CPSF1-206ENST00000531480 ST20-AS1Q8NBB2 130 aa8.48□□□□□ -1.05
CPSF1-206ENST00000531480 GAGE2AQ6NT46 116 aa8.47□□□□□ -1.05
CPSF1-206ENST00000531480 TYMSOSQ8TAI1 123 aa8.47□□□□□ -1.05
CPSF1-206ENST00000531480 C3orf22Q8N5N4 141 aa8.46□□□□□ -1.06
CPSF1-206ENST00000531480 DEFB105AQ8NG35 78 aa8.46□□□□□ -1.06
CPSF1-206ENST00000531480 IGLV5-48A0A075B6I7 105 aa8.45□□□□□ -1.06
CPSF1-206ENST00000531480 LINC01547P58512 204 aaPredicted RBP8.45□□□□□ -1.06
CPSF1-206ENST00000531480 RBM3P98179 157 aaKnown RBP8.45□□□□□ -1.06
CPSF1-206ENST00000531480 ETDBQ3ZM63 59 aa8.45□□□□□ -1.06
CPSF1-206ENST00000531480 DSCR8Q96T75 97 aa8.45□□□□□ -1.06
CPSF1-206ENST00000531480 K7ERU9 68 aa8.44□□□□□ -1.06
CPSF1-206ENST00000531480 MTURNQ8N3F0 131 aa8.44□□□□□ -1.06
CPSF1-206ENST00000531480 NDUFV3P56181 108 aaKnown RBP8.43□□□□□ -1.06
CPSF1-206ENST00000531480 SMCPP49901 116 aaPredicted RBP8.41□□□□□ -1.06
CPSF1-206ENST00000531480 SSBP3-AS1Q7Z2R9 100 aa8.4□□□□□ -1.06
CPSF1-206ENST00000531480 Q8N377 158 aa8.4□□□□□ -1.06
CPSF1-206ENST00000531480 SMIM29Q86T20 159 aa8.39□□□□□ -1.07
CPSF1-206ENST00000531480 LINC00304Q8N9R0 145 aa8.39□□□□□ -1.07
CPSF1-206ENST00000531480 ACYP1P07311 99 aa8.38□□□□□ -1.07
CPSF1-206ENST00000531480 Q6JHZ5 121 aa8.38□□□□□ -1.07
CPSF1-206ENST00000531480 OBSCN-AS1Q96MR7 158 aa8.38□□□□□ -1.07
CPSF1-206ENST00000531480 IGLV9-49A0A0B4J1Y8 123 aa8.37□□□□□ -1.07
CPSF1-206ENST00000531480 A0A1B0GW54 56 aa8.37□□□□□ -1.07
CPSF1-206ENST00000531480 MOBPQ13875 183 aa8.37□□□□□ -1.07
CPSF1-206ENST00000531480 SPAG11AQ6PDA7 123 aa8.37□□□□□ -1.07
CPSF1-206ENST00000531480 Q8NBF4 154 aa8.36□□□□□ -1.07
CPSF1-206ENST00000531480 LOC110117498A0A087WWA1 95 aa8.35□□□□□ -1.07
CPSF1-206ENST00000531480 FAM240AA0A1B0GVK7 77 aa8.32□□□□□ -1.08
CPSF1-206ENST00000531480 CCKP06307 115 aa8.32□□□□□ -1.08
CPSF1-206ENST00000531480 RPS29P62273 56 aaKnown RBP8.32□□□□□ -1.08
CPSF1-206ENST00000531480 LRP2P98164 4655 aa8.32□□□□□ -1.08
CPSF1-206ENST00000531480 IGLV8-61A0A075B6I0 122 aa8.31□□□□□ -1.08
CPSF1-206ENST00000531480 SPINK1P00995 79 aa8.31□□□□□ -1.08
CPSF1-206ENST00000531480 C9orf153Q5TBE3 101 aa8.31□□□□□ -1.08
CPSF1-206ENST00000531480 C14orf132Q9NPU4 83 aa8.31□□□□□ -1.08
CPSF1-206ENST00000531480 TRBV7-4A0A0J9YYF1 115 aa8.28□□□□□ -1.08
CPSF1-206ENST00000531480 C4orf48Q5BLP8 95 aa8.28□□□□□ -1.08
CPSF1-206ENST00000531480 CD164Q04900 197 aa8.27□□□□□ -1.09
CPSF1-206ENST00000531480 Q6ZQT0 140 aa8.27□□□□□ -1.09
CPSF1-206ENST00000531480 A0A1B0GV72 72 aa8.25□□□□□ -1.09
CPSF1-206ENST00000531480 VPS25Q9BRG1 176 aa8.25□□□□□ -1.09
CPSF1-206ENST00000531480 UBL5Q9BZL1 73 aa8.24□□□□□ -1.09
CPSF1-206ENST00000531480 RNF213Q63HN8 5207 aa8.22□□□□□ -1.09
CPSF1-206ENST00000531480 Q6Q795 121 aa8.22□□□□□ -1.09
CPSF1-206ENST00000531480 Q5XG85 94 aa8.21□□□□□ -1.1
CPSF1-206ENST00000531480 SS18L2Q9UHA2 77 aa8.2□□□□□ -1.1
CPSF1-206ENST00000531480 A0A0G2JQZ4 141 aa8.19□□□□□ -1.1
CPSF1-206ENST00000531480 IGFL1Q6UW32 110 aa8.19□□□□□ -1.1
CPSF1-206ENST00000531480 RETNLBQ9BQ08 111 aa8.19□□□□□ -1.1
CPSF1-206ENST00000531480 PRR4Q16378 134 aa8.18□□□□□ -1.1
CPSF1-206ENST00000531480 NREPQ16612 68 aa8.18□□□□□ -1.1
CPSF1-206ENST00000531480 FP248Q71RG6 208 aaPredicted RBP8.18□□□□□ -1.1
CPSF1-206ENST00000531480 LPAP08519 4548 aa8.17□□□□□ -1.1
CPSF1-206ENST00000531480 LIMD2Q9BT23 127 aa8.17□□□□□ -1.1
CPSF1-206ENST00000531480 LINC00643Q86TS7 51 aa8.16□□□□□ -1.1
CPSF1-206ENST00000531480 ATP5EP2Q5VTU8 51 aa8.15□□□□□ -1.1
CPSF1-206ENST00000531480 HRCT1Q6UXD1 115 aa8.15□□□□□ -1.1
CPSF1-206ENST00000531480 A0A1W2PNM2 257 aa8.14□□□□□ -1.11
CPSF1-206ENST00000531480 TRBV7-7A0A0K0K1E9 115 aa8.13□□□□□ -1.11
CPSF1-206ENST00000531480 TPRXLQ17RH7 258 aa8.13□□□□□ -1.11
CPSF1-206ENST00000531480 IGLV7-46A0A075B6I9 117 aa8.12□□□□□ -1.11
CPSF1-206ENST00000531480 ASB16-AS1Q495Z4 193 aa8.11□□□□□ -1.11
CPSF1-206ENST00000531480 LINC00846Q9NV44 126 aa8.11□□□□□ -1.11
CPSF1-206ENST00000531480 A0A087WSZ3 146 aa8.09□□□□□ -1.11
CPSF1-206ENST00000531480 J3KT08 172 aa8.09□□□□□ -1.11
CPSF1-206ENST00000531480 CXCL6P80162 114 aa8.08□□□□□ -1.12
CPSF1-206ENST00000531480 C1orf195Q5TG92 126 aa8.08□□□□□ -1.12
CPSF1-206ENST00000531480 Q6ZVQ6 151 aa8.08□□□□□ -1.12
CPSF1-206ENST00000531480 SIGMAR1Q99720 223 aa8.08□□□□□ -1.12
CPSF1-206ENST00000531480 BPY2O14599 106 aa8.07□□□□□ -1.12
CPSF1-206ENST00000531480 KRTAP13-3Q3SY46 172 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms