RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 DEFB116Q30KQ4 102 aa12.2□□□□□ -0.46
PCF11-203ENST00000530304 IGLV8-61A0A075B6I0 122 aa12.19□□□□□ -0.46
PCF11-203ENST00000530304 HCG22E2RYF7 251 aa12.19□□□□□ -0.46
PCF11-203ENST00000530304 A0A087WSZ3 146 aa12.18□□□□□ -0.46
PCF11-203ENST00000530304 CHTF8P0CG12 524 aa12.17□□□□□ -0.46
PCF11-203ENST00000530304 KRTAP11-1Q8IUC1 163 aa12.17□□□□□ -0.46
PCF11-203ENST00000530304 FAM229BQ4G0N7 80 aa12.16□□□□□ -0.46
PCF11-203ENST00000530304 PHF5AQ7RTV0 110 aaKnown RBP12.16□□□□□ -0.46
PCF11-203ENST00000530304 UBE2DNLQ8IWF7 75 aa12.16□□□□□ -0.46
PCF11-203ENST00000530304 UBE2AP49459 152 aa12.16□□□□□ -0.46
PCF11-203ENST00000530304 PRO0628Q9UI54 55 aa12.14□□□□□ -0.47
PCF11-203ENST00000530304 COL7A1Q02388 2944 aa12.14□□□□□ -0.47
PCF11-203ENST00000530304 ZCCHC13Q8WW36 166 aaKnown RBP12.13□□□□□ -0.47
PCF11-203ENST00000530304 APLNQ9ULZ1 77 aa12.12□□□□□ -0.47
PCF11-203ENST00000530304 C14orf177Q52M58 125 aa12.11□□□□□ -0.47
PCF11-203ENST00000530304 CSMD3Q7Z407 3707 aa12.1□□□□□ -0.47
PCF11-203ENST00000530304 STAB2Q8WWQ8 2551 aa12.1□□□□□ -0.47
PCF11-203ENST00000530304 DNAH7Q8WXX0 4024 aa12.1□□□□□ -0.47
PCF11-203ENST00000530304 SRRM2Q9UQ35 2752 aaKnown RBP12.09□□□□□ -0.47
PCF11-203ENST00000530304 RPL37AP61513 92 aaKnown RBP12.09□□□□□ -0.47
PCF11-203ENST00000530304 WFDC13Q8IUB5 93 aa12.09□□□□□ -0.47
PCF11-203ENST00000530304 H0Y9J4 135 aa12.08□□□□□ -0.47
PCF11-203ENST00000530304 MGAM2Q2M2H8 2515 aa12.07□□□□□ -0.48
PCF11-203ENST00000530304 SPRR1BP22528 89 aa12.07□□□□□ -0.48
PCF11-203ENST00000530304 MPLKIPQ8TAP9 179 aa12.06□□□□□ -0.48
PCF11-203ENST00000530304 C9orf163Q8N9P6 203 aa12.06□□□□□ -0.48
PCF11-203ENST00000530304 LRCOL1A6NCL2 159 aa12.03□□□□□ -0.48
PCF11-203ENST00000530304 DYNC2H1Q8NCM8 4307 aaKnown RBP12.02□□□□□ -0.49
PCF11-203ENST00000530304 hDV103S1A0JD37 113 aa12.02□□□□□ -0.49
PCF11-203ENST00000530304 KRTAP29-1A8MX34 341 aaPredicted RBP12.01□□□□□ -0.49
PCF11-203ENST00000530304 TENM2Q9NT68 2774 aa12□□□□□ -0.49
PCF11-203ENST00000530304 C1orf64Q8NEQ6 169 aa12□□□□□ -0.49
PCF11-203ENST00000530304 B9D2Q9BPU9 175 aa11.99□□□□□ -0.49
PCF11-203ENST00000530304 BRK1Q8WUW1 75 aa11.99□□□□□ -0.49
PCF11-203ENST00000530304 LINC00472Q9H8W2 130 aa11.99□□□□□ -0.49
PCF11-203ENST00000530304 PANO1I0J062 215 aa11.98□□□□□ -0.49
PCF11-203ENST00000530304 PRR15Q8IV56 129 aa11.98□□□□□ -0.49
PCF11-203ENST00000530304 MP68P56378 58 aa11.97□□□□□ -0.49
PCF11-203ENST00000530304 PKIGQ9Y2B9 76 aa11.97□□□□□ -0.49
PCF11-203ENST00000530304 NBDYA0A0U1RRE5 68 aa11.96□□□□□ -0.49
PCF11-203ENST00000530304 CASC2Q6XLA1 102 aa11.96□□□□□ -0.49
PCF11-203ENST00000530304 A8MWP4 228 aa11.96□□□□□ -0.5
PCF11-203ENST00000530304 PLECQ15149 4684 aaKnown RBP11.96□□□□□ -0.5
PCF11-203ENST00000530304 NDUFB1O75438 58 aa11.94□□□□□ -0.5
PCF11-203ENST00000530304 PRR4Q16378 134 aa11.94□□□□□ -0.5
PCF11-203ENST00000530304 KRTAP13-1Q8IUC0 172 aa11.94□□□□□ -0.5
PCF11-203ENST00000530304 Q6ZRN7 208 aaPredicted RBP11.93□□□□□ -0.5
PCF11-203ENST00000530304 LINC00208Q96KT6 92 aa11.93□□□□□ -0.5
PCF11-203ENST00000530304 CYP4F30PQ9H0H9 118 aa11.92□□□□□ -0.5
PCF11-203ENST00000530304 TRAV22A0A0B4J277 110 aa11.92□□□□□ -0.5
PCF11-203ENST00000530304 MDFIQ99750 246 aa11.91□□□□□ -0.5
PCF11-203ENST00000530304 H0Y9P7 68 aa11.89□□□□□ -0.51
PCF11-203ENST00000530304 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.87□□□□□ -0.51
PCF11-203ENST00000530304 SPACA4Q8TDM5 124 aa11.86□□□□□ -0.51
PCF11-203ENST00000530304 IGLV9-49A0A0B4J1Y8 123 aa11.85□□□□□ -0.51
PCF11-203ENST00000530304 NUPR2A6NF83 97 aa11.84□□□□□ -0.51
PCF11-203ENST00000530304 H3BPC8 53 aa11.84□□□□□ -0.51
PCF11-203ENST00000530304 Q1T7F1 81 aa11.84□□□□□ -0.51
PCF11-203ENST00000530304 MMP24-AS1A0A0U1RRL7 71 aa11.83□□□□□ -0.52
PCF11-203ENST00000530304 Q96NJ1 140 aa11.8□□□□□ -0.52
PCF11-203ENST00000530304 SPANXA2-OT1Q8N9U9 137 aa11.78□□□□□ -0.52
PCF11-203ENST00000530304 LINC00483Q53H64 154 aa11.77□□□□□ -0.53
PCF11-203ENST00000530304 A0A087WTM6 91 aa11.76□□□□□ -0.53
PCF11-203ENST00000530304 STARD9Q9P2P6 4700 aa11.76□□□□□ -0.53
PCF11-203ENST00000530304 C1orf195Q5TG92 126 aa11.74□□□□□ -0.53
PCF11-203ENST00000530304 HECTD4Q9Y4D8 3996 aa11.74□□□□□ -0.53
PCF11-203ENST00000530304 VPS13DQ5THJ4 4388 aa11.73□□□□□ -0.53
PCF11-203ENST00000530304 MOBPQ13875 183 aa11.73□□□□□ -0.53
PCF11-203ENST00000530304 PSPHP1O15172 72 aa11.72□□□□□ -0.53
PCF11-203ENST00000530304 PSORS1C2Q9UIG4 136 aa11.72□□□□□ -0.53
PCF11-203ENST00000530304 FRAS1Q86XX4 4008 aa11.71□□□□□ -0.53
PCF11-203ENST00000530304 ASB16-AS1Q495Z4 193 aa11.71□□□□□ -0.53
PCF11-203ENST00000530304 WWC2-AS2Q96NR7 200 aa11.7□□□□□ -0.54
PCF11-203ENST00000530304 ZNF706Q9Y5V0 76 aaPredicted RBP11.7□□□□□ -0.54
PCF11-203ENST00000530304 RTL8CO15255 209 aa11.7□□□□□ -0.54
PCF11-203ENST00000530304 IGLV5-52A0A0A0MRZ9 124 aa11.69□□□□□ -0.54
PCF11-203ENST00000530304 C8orf17Q9NRJ1 99 aa11.68□□□□□ -0.54
PCF11-203ENST00000530304 ANAPC11Q9NYG5 84 aa11.68□□□□□ -0.54
PCF11-203ENST00000530304 TP53AIP1Q9HCN2 124 aa11.66□□□□□ -0.54
PCF11-203ENST00000530304 DNAH8Q96JB1 4490 aa11.66□□□□□ -0.54
PCF11-203ENST00000530304 PRKDCP78527 4128 aaKnown RBP11.66□□□□□ -0.54
PCF11-203ENST00000530304 KMT2AQ03164 3969 aa11.66□□□□□ -0.54
PCF11-203ENST00000530304 IGHV6-1A0A0B4J1U7 121 aa11.65□□□□□ -0.54
PCF11-203ENST00000530304 ZNF861PO60384 105 aa11.64□□□□□ -0.55
PCF11-203ENST00000530304 A0A1B0GVX0 72 aa11.64□□□□□ -0.55
PCF11-203ENST00000530304 PLAC8Q9NZF1 115 aa11.64□□□□□ -0.55
PCF11-203ENST00000530304 V9GYY9 64 aa11.64□□□□□ -0.55
PCF11-203ENST00000530304 DNAH2Q9P225 4427 aa11.63□□□□□ -0.55
PCF11-203ENST00000530304 IGLV7-46A0A075B6I9 117 aa11.62□□□□□ -0.55
PCF11-203ENST00000530304 A8MUN3 132 aa11.61□□□□□ -0.55
PCF11-203ENST00000530304 PCOTHQ58A44 107 aa11.6□□□□□ -0.55
PCF11-203ENST00000530304 CDK2AP2O75956 126 aa11.6□□□□□ -0.55
PCF11-203ENST00000530304 Q6ZR54 194 aa11.6□□□□□ -0.55
PCF11-203ENST00000530304 NDUFS5O43920 106 aa11.59□□□□□ -0.55
PCF11-203ENST00000530304 Q8N9P0 234 aaPredicted RBP11.58□□□□□ -0.56
PCF11-203ENST00000530304 DNAH17Q9UFH2 4485 aa11.58□□□□□ -0.56
PCF11-203ENST00000530304 CD164Q04900 197 aa11.56□□□□□ -0.56
PCF11-203ENST00000530304 A0A087X002 238 aa11.56□□□□□ -0.56
PCF11-203ENST00000530304 NOTCH2NLQ7Z3S9 236 aa11.56□□□□□ -0.56
PCF11-203ENST00000530304 MRPL34Q9BQ48 92 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms