RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 TRAV13-2A0A0B4J235 113 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 MT1BP07438 61 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 SPRR2EP22531 72 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 PLNP26678 52 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 SPRR2BP35325 72 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 SPRR2AP35326 72 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 KRTAP10-5P60370 271 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 OCIAD2Q56VL3 154 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 NHP2Q9NX24 153 aaKnown RBP6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 TRAPPC1Q9Y5R8 145 aa6.4□□□□□ -1.38
NKX3-1-202ENST00000523261 GPR98Q8WXG9 6306 aa6.4□□□□□ -1.39
NKX3-1-202ENST00000523261 A4D1N5 150 aa6.39□□□□□ -1.39
NKX3-1-202ENST00000523261 CHCHD1Q96BP2 118 aaKnown RBP6.39□□□□□ -1.39
NKX3-1-202ENST00000523261 hCG_2014768A0A024R1R8 64 aa6.38□□□□□ -1.39
NKX3-1-202ENST00000523261 SS18L2Q9UHA2 77 aa6.38□□□□□ -1.39
NKX3-1-202ENST00000523261 TIMM17BO60830 172 aa6.36□□□□□ -1.39
NKX3-1-202ENST00000523261 DPM2O94777 84 aa6.36□□□□□ -1.39
NKX3-1-202ENST00000523261 GHRHP01286 108 aa6.36□□□□□ -1.39
NKX3-1-202ENST00000523261 ANKRD39Q53RE8 183 aa6.35□□□□□ -1.39
NKX3-1-202ENST00000523261 SLC7A5P1Q8MH63 180 aa6.35□□□□□ -1.39
NKX3-1-202ENST00000523261 SERF1AO75920 110 aa6.34□□□□□ -1.39
NKX3-1-202ENST00000523261 LINC00313P59037 77 aa6.34□□□□□ -1.39
NKX3-1-202ENST00000523261 PMCHL2Q9BQD1 86 aa6.34□□□□□ -1.39
NKX3-1-202ENST00000523261 COLCA2A8K830 154 aa6.33□□□□□ -1.4
NKX3-1-202ENST00000523261 E9PLD3 99 aa6.33□□□□□ -1.4
NKX3-1-202ENST00000523261 IGKCP01834 107 aa6.33□□□□□ -1.4
NKX3-1-202ENST00000523261 Q6ZQY7 126 aa6.32□□□□□ -1.4
NKX3-1-202ENST00000523261 SPRR2FQ96RM1 72 aa6.32□□□□□ -1.4
NKX3-1-202ENST00000523261 A6NDN8 102 aa6.31□□□□□ -1.4
NKX3-1-202ENST00000523261 H3BUT2 72 aa6.3□□□□□ -1.4
NKX3-1-202ENST00000523261 HSBP1O75506 76 aa6.3□□□□□ -1.4
NKX3-1-202ENST00000523261 SPINK7P58062 85 aa6.29□□□□□ -1.4
NKX3-1-202ENST00000523261 Q5VV11 94 aa6.29□□□□□ -1.4
NKX3-1-202ENST00000523261 SIGMAR1Q99720 223 aa6.29□□□□□ -1.4
NKX3-1-202ENST00000523261 A0A1W2PNM2 257 aa6.28□□□□□ -1.4
NKX3-1-202ENST00000523261 LINC00575Q6W349 94 aa6.28□□□□□ -1.4
NKX3-1-202ENST00000523261 SMIM11BQ8TCY0 68 aa6.28□□□□□ -1.4
NKX3-1-202ENST00000523261 TMEM218A2RU14 115 aa6.27□□□□□ -1.41
NKX3-1-202ENST00000523261 LEPROTL1O95214 131 aa6.27□□□□□ -1.41
NKX3-1-202ENST00000523261 FAM218AQ96MZ4 157 aa6.27□□□□□ -1.41
NKX3-1-202ENST00000523261 A0A087WSZ3 146 aa6.26□□□□□ -1.41
NKX3-1-202ENST00000523261 KRTAP19-8Q3LI54 63 aa6.26□□□□□ -1.41
NKX3-1-202ENST00000523261 WFDC13Q8IUB5 93 aa6.25□□□□□ -1.41
NKX3-1-202ENST00000523261 SCGB1D1O95968 90 aa6.24□□□□□ -1.41
NKX3-1-202ENST00000523261 LCE1AQ5T7P2 110 aa6.24□□□□□ -1.41
NKX3-1-202ENST00000523261 TEN1Q86WV5 123 aa6.24□□□□□ -1.41
NKX3-1-202ENST00000523261 hADV29S1A0JD25 119 aa6.23□□□□□ -1.41
NKX3-1-202ENST00000523261 SNHG12Q9BXW3 62 aa6.21□□□□□ -1.42
NKX3-1-202ENST00000523261 TTTY13Q9BZ97 58 aa6.21□□□□□ -1.42
NKX3-1-202ENST00000523261 HSPB8Q9UJY1 196 aa6.21□□□□□ -1.42
NKX3-1-202ENST00000523261 SPRR2DP22532 72 aa6.2□□□□□ -1.42
NKX3-1-202ENST00000523261 VAMP3Q15836 100 aa6.2□□□□□ -1.42
NKX3-1-202ENST00000523261 UQCC3Q6UW78 93 aa6.2□□□□□ -1.42
NKX3-1-202ENST00000523261 ZCCHC13Q8WW36 166 aaKnown RBP6.2□□□□□ -1.42
NKX3-1-202ENST00000523261 PPDPFLQ8WWR9 84 aa6.2□□□□□ -1.42
NKX3-1-202ENST00000523261 IGKV4-1P06312 121 aa6.19□□□□□ -1.42
NKX3-1-202ENST00000523261 FABP4P15090 132 aa6.19□□□□□ -1.42
NKX3-1-202ENST00000523261 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.19□□□□□ -1.42
NKX3-1-202ENST00000523261 LINC00310P59036 64 aa6.18□□□□□ -1.42
NKX3-1-202ENST00000523261 IFITM1P13164 125 aa6.17□□□□□ -1.42
NKX3-1-202ENST00000523261 COPS9Q8WXC6 57 aa6.17□□□□□ -1.42
NKX3-1-202ENST00000523261 SPRR2GQ9BYE4 73 aa6.16□□□□□ -1.42
NKX3-1-202ENST00000523261 H1FX-AS1Q4G0G2 97 aa6.15□□□□□ -1.42
NKX3-1-202ENST00000523261 CLLU1Q5K131 121 aa6.14□□□□□ -1.43
NKX3-1-202ENST00000523261 MUSTN1Q8IVN3 82 aa6.14□□□□□ -1.43
NKX3-1-202ENST00000523261 IGHV6-1A0A0B4J1U7 121 aa6.13□□□□□ -1.43
NKX3-1-202ENST00000523261 SCGB1D4Q6XE38 83 aa6.11□□□□□ -1.43
NKX3-1-202ENST00000523261 TMA7Q9Y2S6 64 aaKnown RBP6.11□□□□□ -1.43
NKX3-1-202ENST00000523261 LCE3BQ5TA77 95 aa6.1□□□□□ -1.43
NKX3-1-202ENST00000523261 DEFB116Q30KQ4 102 aa6.09□□□□□ -1.43
NKX3-1-202ENST00000523261 FAM236AA0A1B0GUQ0 79 aa6.07□□□□□ -1.44
NKX3-1-202ENST00000523261 FAM236BA0A1B0GV22 79 aa6.07□□□□□ -1.44
NKX3-1-202ENST00000523261 YPEL4Q96NS1 127 aa6.07□□□□□ -1.44
NKX3-1-202ENST00000523261 IMUPQ9GZP8 106 aa6.07□□□□□ -1.44
NKX3-1-202ENST00000523261 C3orf79P0CE67 100 aa6.06□□□□□ -1.44
NKX3-1-202ENST00000523261 NDUFV3P56181 108 aaKnown RBP6.06□□□□□ -1.44
NKX3-1-202ENST00000523261 LINC00472Q9H8W2 130 aa6.06□□□□□ -1.44
NKX3-1-202ENST00000523261 C8orf87E5RJ46 101 aa6.05□□□□□ -1.44
NKX3-1-202ENST00000523261 SYS1-DBNDD2H3BUS1 97 aa6.04□□□□□ -1.44
NKX3-1-202ENST00000523261 KRTAP8-1Q8IUC2 63 aa6.04□□□□□ -1.44
NKX3-1-202ENST00000523261 H3BMG7 143 aa6.02□□□□□ -1.45
NKX3-1-202ENST00000523261 LINC01545Q5VT33 79 aa6.02□□□□□ -1.45
NKX3-1-202ENST00000523261 RAB37Q96AX2 223 aa6.02□□□□□ -1.45
NKX3-1-202ENST00000523261 C12orf57Q99622 126 aa6.02□□□□□ -1.45
NKX3-1-202ENST00000523261 A0A1B0GVX0 72 aa6.01□□□□□ -1.45
NKX3-1-202ENST00000523261 SMCPP49901 116 aaPredicted RBP6□□□□□ -1.45
NKX3-1-202ENST00000523261 TRGC2P03986 189 aa5.99□□□□□ -1.45
NKX3-1-202ENST00000523261 BVES-AS1Q5T3Y7 98 aa5.99□□□□□ -1.45
NKX3-1-202ENST00000523261 TRBV7-4A0A0J9YYF1 115 aa5.97□□□□□ -1.45
NKX3-1-202ENST00000523261 APOC3P02656 99 aa5.94□□□□□ -1.46
NKX3-1-202ENST00000523261 PET117Q6UWS5 81 aa5.94□□□□□ -1.46
NKX3-1-202ENST00000523261 IGKV3D-7A0A0C4DH55 119 aa5.93□□□□□ -1.46
NKX3-1-202ENST00000523261 SNAPINO95295 136 aa5.93□□□□□ -1.46
NKX3-1-202ENST00000523261 LYRM7Q5U5X0 104 aa5.93□□□□□ -1.46
NKX3-1-202ENST00000523261 C5orf47Q569G3 176 aa5.92□□□□□ -1.46
NKX3-1-202ENST00000523261 DSCR8Q96T75 97 aa5.92□□□□□ -1.46
NKX3-1-202ENST00000523261 DSTQ03001 7570 aaKnown RBP5.89□□□□□ -1.47
NKX3-1-202ENST00000523261 FABP2P12104 132 aa5.89□□□□□ -1.47
NKX3-1-202ENST00000523261 SVBPQ8N300 66 aa5.89□□□□□ -1.47
NKX3-1-202ENST00000523261 ANKRD29Q8N6D5 301 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 182.8 ms