RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 C3orf22Q8N5N4 141 aa9.62□□□□□ -0.87
LSM1-204ENST00000522515 TRBV20-1A0A075B6N2 111 aa9.61□□□□□ -0.87
LSM1-204ENST00000522515 OCIAD2Q56VL3 154 aa9.61□□□□□ -0.87
LSM1-204ENST00000522515 SMIM29Q86T20 159 aa9.61□□□□□ -0.87
LSM1-204ENST00000522515 KRTAP29-1A8MX34 341 aaPredicted RBP9.6□□□□□ -0.87
LSM1-204ENST00000522515 PCLOQ9Y6V0 5065 aa9.59□□□□□ -0.87
LSM1-204ENST00000522515 IGLV9-49A0A0B4J1Y8 123 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 KRTAP10-8P60410 259 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 ORMDL1Q9P0S3 153 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 LAMTOR3Q9UHA4 124 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 MT1HL1P0DM35 61 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 PPDPFLQ8WWR9 84 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 SPCS1Q9Y6A9 102 aa9.58□□□□□ -0.88
LSM1-204ENST00000522515 TYMSOSQ8TAI1 123 aa9.56□□□□□ -0.88
LSM1-204ENST00000522515 H3BMG7 143 aa9.55□□□□□ -0.88
LSM1-204ENST00000522515 GHRHP01286 108 aa9.55□□□□□ -0.88
LSM1-204ENST00000522515 MOBPQ13875 183 aa9.55□□□□□ -0.88
LSM1-204ENST00000522515 C9orf153Q5TBE3 101 aa9.54□□□□□ -0.88
LSM1-204ENST00000522515 TMEM256-PLSCR3K7ERE1 68 aa9.53□□□□□ -0.88
LSM1-204ENST00000522515 BAALC-AS2P0C853 105 aa9.53□□□□□ -0.88
LSM1-204ENST00000522515 TNXBP22105 4242 aa9.52□□□□□ -0.89
LSM1-204ENST00000522515 C9JAW5 83 aa9.52□□□□□ -0.89
LSM1-204ENST00000522515 H3BQ85 93 aa9.52□□□□□ -0.89
LSM1-204ENST00000522515 NDUFV3P56181 108 aaKnown RBP9.52□□□□□ -0.89
LSM1-204ENST00000522515 K7EP34 96 aa9.51□□□□□ -0.89
LSM1-204ENST00000522515 Q8NBF4 154 aa9.51□□□□□ -0.89
LSM1-204ENST00000522515 F8WEM9 126 aa9.5□□□□□ -0.89
LSM1-204ENST00000522515 J3QL48 77 aa9.5□□□□□ -0.89
LSM1-204ENST00000522515 SSBP3-AS1Q7Z2R9 100 aa9.5□□□□□ -0.89
LSM1-204ENST00000522515 MTURNQ8N3F0 131 aa9.5□□□□□ -0.89
LSM1-204ENST00000522515 UBE2V1Q13404 147 aa9.48□□□□□ -0.89
LSM1-204ENST00000522515 IGLV8-61A0A075B6I0 122 aa9.47□□□□□ -0.89
LSM1-204ENST00000522515 A0A0G2JQZ4 141 aa9.46□□□□□ -0.89
LSM1-204ENST00000522515 GTF2H5Q6ZYL4 71 aa9.46□□□□□ -0.89
LSM1-204ENST00000522515 ANKRD29Q8N6D5 301 aa9.46□□□□□ -0.89
LSM1-204ENST00000522515 A0A1B0GV72 72 aa9.46□□□□□ -0.9
LSM1-204ENST00000522515 LINC00304Q8N9R0 145 aa9.45□□□□□ -0.9
LSM1-204ENST00000522515 H3BT86 120 aa9.44□□□□□ -0.9
LSM1-204ENST00000522515 IGFL1Q6UW32 110 aa9.43□□□□□ -0.9
LSM1-204ENST00000522515 Q6JHZ5 121 aa9.42□□□□□ -0.9
LSM1-204ENST00000522515 PRO0461Q9UI25 63 aa9.42□□□□□ -0.9
LSM1-204ENST00000522515 SMCPP49901 116 aaPredicted RBP9.41□□□□□ -0.9
LSM1-204ENST00000522515 DMBT1Q9UGM3 2413 aaPredicted RBP9.4□□□□□ -0.9
LSM1-204ENST00000522515 C4orf48Q5BLP8 95 aa9.4□□□□□ -0.9
LSM1-204ENST00000522515 SPAG11AQ6PDA7 123 aa9.39□□□□□ -0.91
LSM1-204ENST00000522515 HRCT1Q6UXD1 115 aa9.39□□□□□ -0.91
LSM1-204ENST00000522515 RBM3P98179 157 aaKnown RBP9.38□□□□□ -0.91
LSM1-204ENST00000522515 JMJD7-PLA2G4BH0Y9G9 81 aa9.37□□□□□ -0.91
LSM1-204ENST00000522515 TRBV7-4A0A0J9YYF1 115 aa9.36□□□□□ -0.91
LSM1-204ENST00000522515 SPINK1P00995 79 aa9.36□□□□□ -0.91
LSM1-204ENST00000522515 CD164Q04900 197 aa9.36□□□□□ -0.91
LSM1-204ENST00000522515 OBSCN-AS1Q96MR7 158 aa9.35□□□□□ -0.91
LSM1-204ENST00000522515 F8W1H4 67 aa9.34□□□□□ -0.91
LSM1-204ENST00000522515 DSCR8Q96T75 97 aa9.34□□□□□ -0.91
LSM1-204ENST00000522515 A0A1W2PNM2 257 aa9.33□□□□□ -0.92
LSM1-204ENST00000522515 C14orf132Q9NPU4 83 aa9.32□□□□□ -0.92
LSM1-204ENST00000522515 RPS29P62273 56 aaKnown RBP9.31□□□□□ -0.92
LSM1-204ENST00000522515 TEN1Q86WV5 123 aa9.31□□□□□ -0.92
LSM1-204ENST00000522515 CCKP06307 115 aa9.3□□□□□ -0.92
LSM1-204ENST00000522515 Q6Q795 121 aa9.3□□□□□ -0.92
LSM1-204ENST00000522515 TRBV7-7A0A0K0K1E9 115 aa9.29□□□□□ -0.92
LSM1-204ENST00000522515 LOC110117498A0A087WWA1 95 aa9.29□□□□□ -0.92
LSM1-204ENST00000522515 Q6ZQT0 140 aa9.29□□□□□ -0.92
LSM1-204ENST00000522515 VPS25Q9BRG1 176 aa9.28□□□□□ -0.92
LSM1-204ENST00000522515 LIMD2Q9BT23 127 aa9.27□□□□□ -0.93
LSM1-204ENST00000522515 ETDBQ3ZM63 59 aa9.26□□□□□ -0.93
LSM1-204ENST00000522515 HERC1Q15751 4861 aa9.26□□□□□ -0.93
LSM1-204ENST00000522515 PDE6GP18545 87 aa9.25□□□□□ -0.93
LSM1-204ENST00000522515 RETNLBQ9BQ08 111 aa9.25□□□□□ -0.93
LSM1-204ENST00000522515 A0A087WSZ3 146 aa9.24□□□□□ -0.93
LSM1-204ENST00000522515 Q5XG85 94 aa9.24□□□□□ -0.93
LSM1-204ENST00000522515 SS18L2Q9UHA2 77 aa9.19□□□□□ -0.94
LSM1-204ENST00000522515 ASB16-AS1Q495Z4 193 aa9.18□□□□□ -0.94
LSM1-204ENST00000522515 C21orf62-AS1Q17RA5 79 aa9.17□□□□□ -0.94
LSM1-204ENST00000522515 C1orf195Q5TG92 126 aa9.17□□□□□ -0.94
LSM1-204ENST00000522515 A0A1B0GW54 56 aa9.16□□□□□ -0.94
LSM1-204ENST00000522515 PRR4Q16378 134 aa9.16□□□□□ -0.94
LSM1-204ENST00000522515 Q96NJ1 140 aa9.12□□□□□ -0.95
LSM1-204ENST00000522515 FP248Q71RG6 208 aaPredicted RBP9.12□□□□□ -0.95
LSM1-204ENST00000522515 IGLV7-46A0A075B6I9 117 aa9.09□□□□□ -0.95
LSM1-204ENST00000522515 LINC00472Q9H8W2 130 aa9.09□□□□□ -0.95
LSM1-204ENST00000522515 DEFB116Q30KQ4 102 aa9.08□□□□□ -0.96
LSM1-204ENST00000522515 K7ERU9 68 aa9.07□□□□□ -0.96
LSM1-204ENST00000522515 HMCN2Q8NDA2 5059 aa9.06□□□□□ -0.96
LSM1-204ENST00000522515 NREPQ16612 68 aa9.05□□□□□ -0.96
LSM1-204ENST00000522515 LINC00846Q9NV44 126 aa9.05□□□□□ -0.96
LSM1-204ENST00000522515 IGKV4-1P06312 121 aa9.03□□□□□ -0.96
LSM1-204ENST00000522515 J3QR89 54 aa9.02□□□□□ -0.97
LSM1-204ENST00000522515 SIGMAR1Q99720 223 aa9.02□□□□□ -0.97
LSM1-204ENST00000522515 LPAP08519 4548 aa9.01□□□□□ -0.97
LSM1-204ENST00000522515 Q6ZVQ6 151 aa9.01□□□□□ -0.97
LSM1-204ENST00000522515 TPRXLQ17RH7 258 aa9□□□□□ -0.97
LSM1-204ENST00000522515 KRTAP13-3Q3SY46 172 aa9□□□□□ -0.97
LSM1-204ENST00000522515 UBL5Q9BZL1 73 aa8.99□□□□□ -0.97
LSM1-204ENST00000522515 FAM240AA0A1B0GVK7 77 aa8.98□□□□□ -0.97
LSM1-204ENST00000522515 J3KT08 172 aa8.98□□□□□ -0.97
LSM1-204ENST00000522515 ACYP1P07311 99 aa8.98□□□□□ -0.97
LSM1-204ENST00000522515 C9orf92A6NGG3 77 aa8.97□□□□□ -0.97
LSM1-204ENST00000522515 BPY2O14599 106 aa8.93□□□□□ -0.98
LSM1-204ENST00000522515 DSCR10P59022 87 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms