RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 IGHV4-30-4P0DP06 118 aa6.58□□□□□ -1.36
PDGFRB-207ENST00000520579 C7orf33Q8WU49 177 aa6.58□□□□□ -1.36
PDGFRB-207ENST00000520579 LINC00476Q8WZB0 136 aa6.58□□□□□ -1.36
PDGFRB-207ENST00000520579 CMC4P56277 68 aaPredicted RBP6.57□□□□□ -1.36
PDGFRB-207ENST00000520579 SPINK7P58062 85 aa6.57□□□□□ -1.36
PDGFRB-207ENST00000520579 A0A087WSZ3 146 aa6.57□□□□□ -1.36
PDGFRB-207ENST00000520579 IGKV2-24A0A0C4DH68 120 aa6.56□□□□□ -1.36
PDGFRB-207ENST00000520579 Q8NAQ8 132 aa6.56□□□□□ -1.36
PDGFRB-207ENST00000520579 LELP1Q5T871 98 aa6.56□□□□□ -1.36
PDGFRB-207ENST00000520579 TENM3Q9P273 2699 aa6.55□□□□□ -1.36
PDGFRB-207ENST00000520579 SPART-AS1P0CW21 52 aa6.54□□□□□ -1.36
PDGFRB-207ENST00000520579 C1orf134Q5TEV5 83 aa6.54□□□□□ -1.36
PDGFRB-207ENST00000520579 NSD1Q96L73 2696 aaPredicted RBP6.54□□□□□ -1.36
PDGFRB-207ENST00000520579 DSCR10P59022 87 aa6.54□□□□□ -1.36
PDGFRB-207ENST00000520579 PRLHP81277 87 aa6.54□□□□□ -1.36
PDGFRB-207ENST00000520579 COA5Q86WW8 74 aa6.54□□□□□ -1.36
PDGFRB-207ENST00000520579 H0Y9J4 135 aa6.53□□□□□ -1.36
PDGFRB-207ENST00000520579 CSAG1Q6PB30 78 aa6.52□□□□□ -1.36
PDGFRB-207ENST00000520579 KMT2BQ9UMN6 2715 aaPredicted RBP6.52□□□□□ -1.37
PDGFRB-207ENST00000520579 FBN1P35555 2871 aaKnown RBP6.52□□□□□ -1.37
PDGFRB-207ENST00000520579 EGFEM1PQ0D2K5 195 aa6.51□□□□□ -1.37
PDGFRB-207ENST00000520579 MGAM2Q2M2H8 2515 aa6.51□□□□□ -1.37
PDGFRB-207ENST00000520579 H0Y9P7 68 aa6.51□□□□□ -1.37
PDGFRB-207ENST00000520579 STAB1Q9NY15 2570 aa6.51□□□□□ -1.37
PDGFRB-207ENST00000520579 H3BQ85 93 aa6.51□□□□□ -1.37
PDGFRB-207ENST00000520579 Q8NBF4 154 aa6.5□□□□□ -1.37
PDGFRB-207ENST00000520579 Q9BRP9 147 aa6.5□□□□□ -1.37
PDGFRB-207ENST00000520579 C15orf56Q8N910 161 aa6.5□□□□□ -1.37
PDGFRB-207ENST00000520579 TRRAPQ9Y4A5 3859 aa6.5□□□□□ -1.37
PDGFRB-207ENST00000520579 CSMD3Q7Z407 3707 aa6.5□□□□□ -1.37
PDGFRB-207ENST00000520579 CASC10Q5T4H9 136 aa6.49□□□□□ -1.37
PDGFRB-207ENST00000520579 ZCCHC13Q8WW36 166 aaKnown RBP6.48□□□□□ -1.37
PDGFRB-207ENST00000520579 KRTAP10-3P60369 221 aa6.48□□□□□ -1.37
PDGFRB-207ENST00000520579 ANK3Q12955 4377 aaKnown RBP6.47□□□□□ -1.37
PDGFRB-207ENST00000520579 INAFM1C9JVW0 142 aa6.47□□□□□ -1.37
PDGFRB-207ENST00000520579 COL7A1Q02388 2944 aa6.46□□□□□ -1.38
PDGFRB-207ENST00000520579 PRR34Q9NV39 138 aa6.46□□□□□ -1.38
PDGFRB-207ENST00000520579 Q6ZRX8 168 aa6.45□□□□□ -1.38
PDGFRB-207ENST00000520579 OTOGQ6ZRI0 2925 aa6.44□□□□□ -1.38
PDGFRB-207ENST00000520579 GVQW2A0A096LPI5 108 aaPredicted RBP6.44□□□□□ -1.38
PDGFRB-207ENST00000520579 DHRS4-AS1Q9P1J3 65 aa6.43□□□□□ -1.38
PDGFRB-207ENST00000520579 ANK2Q01484 3957 aa6.43□□□□□ -1.38
PDGFRB-207ENST00000520579 IGFL1Q6UW32 110 aa6.43□□□□□ -1.38
PDGFRB-207ENST00000520579 PLA2G1BP04054 148 aaKnown RBP6.42□□□□□ -1.38
PDGFRB-207ENST00000520579 IGLV5-48A0A075B6I7 105 aa6.42□□□□□ -1.38
PDGFRB-207ENST00000520579 IGHV6-1A0A0B4J1U7 121 aa6.42□□□□□ -1.38
PDGFRB-207ENST00000520579 KRTAP1-3Q8IUG1 177 aa6.41□□□□□ -1.38
PDGFRB-207ENST00000520579 KCNQ1DNQ9H478 68 aa6.41□□□□□ -1.38
PDGFRB-207ENST00000520579 LINC01558Q9Y6Z2 57 aa6.39□□□□□ -1.39
PDGFRB-207ENST00000520579 DEFB131BA0A096LNP1 70 aa6.38□□□□□ -1.39
PDGFRB-207ENST00000520579 FLG2Q5D862 2391 aaPredicted RBP6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 LCE6AA0A183 80 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 SPANXA2-OT1Q8N9U9 137 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 CHTF8P0CG12 524 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 REG3GQ6UW15 175 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 Q6ZR54 194 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 IGLV1-50A0A075B6I6 118 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 IGLV9-49A0A0B4J1Y8 123 aa6.37□□□□□ -1.39
PDGFRB-207ENST00000520579 TENM2Q9NT68 2774 aa6.36□□□□□ -1.39
PDGFRB-207ENST00000520579 MIR22HGQ0VDD5 57 aa6.35□□□□□ -1.39
PDGFRB-207ENST00000520579 KRTAP26-1Q6PEX3 210 aa6.34□□□□□ -1.39
PDGFRB-207ENST00000520579 SPINK6Q6UWN8 80 aa6.34□□□□□ -1.39
PDGFRB-207ENST00000520579 CNBPP62633 177 aaKnown RBP6.32□□□□□ -1.4
PDGFRB-207ENST00000520579 TNP2Q05952 138 aa6.32□□□□□ -1.4
PDGFRB-207ENST00000520579 KRTAP7-1Q8IUC3 87 aa6.32□□□□□ -1.4
PDGFRB-207ENST00000520579 SPRR4Q96PI1 79 aa6.32□□□□□ -1.4
PDGFRB-207ENST00000520579 KRTAP1-1Q07627 177 aa6.31□□□□□ -1.4
PDGFRB-207ENST00000520579 STAB2Q8WWQ8 2551 aa6.3□□□□□ -1.4
PDGFRB-207ENST00000520579 ROMO1P60602 79 aa6.3□□□□□ -1.4
PDGFRB-207ENST00000520579 CMYA5Q8N3K9 4069 aa6.28□□□□□ -1.4
PDGFRB-207ENST00000520579 ANAPC11Q9NYG5 84 aa6.28□□□□□ -1.4
PDGFRB-207ENST00000520579 K7EIL1 84 aa6.27□□□□□ -1.4
PDGFRB-207ENST00000520579 IGLV8-61A0A075B6I0 122 aa6.27□□□□□ -1.41
PDGFRB-207ENST00000520579 KRTAP4-16G5E9R7 235 aaPredicted RBP6.26□□□□□ -1.41
PDGFRB-207ENST00000520579 A0A1B0GU69 56 aa6.26□□□□□ -1.41
PDGFRB-207ENST00000520579 CDK2AP2O75956 126 aa6.26□□□□□ -1.41
PDGFRB-207ENST00000520579 IGLV7-46A0A075B6I9 117 aa6.25□□□□□ -1.41
PDGFRB-207ENST00000520579 LINC01556Q5JQF7 62 aa6.25□□□□□ -1.41
PDGFRB-207ENST00000520579 H3BPC8 53 aa6.25□□□□□ -1.41
PDGFRB-207ENST00000520579 A8MWP4 228 aa6.25□□□□□ -1.41
PDGFRB-207ENST00000520579 RTL8CO15255 209 aa6.24□□□□□ -1.41
PDGFRB-207ENST00000520579 KRTAP11-1Q8IUC1 163 aa6.24□□□□□ -1.41
PDGFRB-207ENST00000520579 KRTAP29-1A8MX34 341 aaPredicted RBP6.23□□□□□ -1.41
PDGFRB-207ENST00000520579 HRES1P13985 223 aa6.22□□□□□ -1.41
PDGFRB-207ENST00000520579 SPRR1AP35321 89 aa6.22□□□□□ -1.41
PDGFRB-207ENST00000520579 CRIPTQ9P021 101 aa6.21□□□□□ -1.42
PDGFRB-207ENST00000520579 C9orf163Q8N9P6 203 aa6.2□□□□□ -1.42
PDGFRB-207ENST00000520579 MMP24-AS1A0A0U1RRL7 71 aa6.2□□□□□ -1.42
PDGFRB-207ENST00000520579 KRTAP10-11P60412 298 aa6.19□□□□□ -1.42
PDGFRB-207ENST00000520579 UBE2DNLQ8IWF7 75 aa6.19□□□□□ -1.42
PDGFRB-207ENST00000520579 DMBT1Q9UGM3 2413 aaPredicted RBP6.19□□□□□ -1.42
PDGFRB-207ENST00000520579 A0A087X002 238 aa6.19□□□□□ -1.42
PDGFRB-207ENST00000520579 KRTAP16-1A8MUX0 517 aa6.19□□□□□ -1.42
PDGFRB-207ENST00000520579 NOTCH2NLQ7Z3S9 236 aa6.19□□□□□ -1.42
PDGFRB-207ENST00000520579 A0A1B0GW54 56 aa6.18□□□□□ -1.42
PDGFRB-207ENST00000520579 UQCR11O14957 56 aa6.18□□□□□ -1.42
PDGFRB-207ENST00000520579 ASB16-AS1Q495Z4 193 aa6.18□□□□□ -1.42
PDGFRB-207ENST00000520579 SPINT4Q6UDR6 99 aa6.17□□□□□ -1.42
PDGFRB-207ENST00000520579 DNAH10OSP0CZ25 163 aa6.16□□□□□ -1.42
PDGFRB-207ENST00000520579 LINC00472Q9H8W2 130 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms