RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 RPL37AP61513 92 aaKnown RBP9.72□□□□□ -0.85
NUP54-214ENST00000514307 PKD1P98161 4303 aa9.72□□□□□ -0.85
NUP54-214ENST00000514307 TRBV7-4A0A0J9YYF1 115 aa9.71□□□□□ -0.86
NUP54-214ENST00000514307 Q6ZQT0 140 aa9.71□□□□□ -0.86
NUP54-214ENST00000514307 LINC00483Q53H64 154 aa9.7□□□□□ -0.86
NUP54-214ENST00000514307 Q6JHZ5 121 aa9.7□□□□□ -0.86
NUP54-214ENST00000514307 IGLV8-61A0A075B6I0 122 aa9.69□□□□□ -0.86
NUP54-214ENST00000514307 A0A1B0GW54 56 aa9.69□□□□□ -0.86
NUP54-214ENST00000514307 C3orf22Q8N5N4 141 aa9.69□□□□□ -0.86
NUP54-214ENST00000514307 PKHD1P08F94 4074 aa9.68□□□□□ -0.86
NUP54-214ENST00000514307 VPS25Q9BRG1 176 aa9.67□□□□□ -0.86
NUP54-214ENST00000514307 SPINK6Q6UWN8 80 aa9.66□□□□□ -0.86
NUP54-214ENST00000514307 DNAH8Q96JB1 4490 aa9.65□□□□□ -0.86
NUP54-214ENST00000514307 FAM229AH3BQW9 127 aa9.65□□□□□ -0.86
NUP54-214ENST00000514307 CDK2AP2O75956 126 aa9.65□□□□□ -0.86
NUP54-214ENST00000514307 SMR3BP02814 79 aaPredicted RBP9.65□□□□□ -0.86
NUP54-214ENST00000514307 DNAH5Q8TE73 4624 aa9.65□□□□□ -0.87
NUP54-214ENST00000514307 KIAA1109Q2LD37 5005 aa9.64□□□□□ -0.87
NUP54-214ENST00000514307 PLA2G1BP04054 148 aaKnown RBP9.62□□□□□ -0.87
NUP54-214ENST00000514307 FAM229BQ4G0N7 80 aa9.61□□□□□ -0.87
NUP54-214ENST00000514307 IGLV9-49A0A0B4J1Y8 123 aa9.6□□□□□ -0.87
NUP54-214ENST00000514307 C9orf153Q5TBE3 101 aa9.6□□□□□ -0.87
NUP54-214ENST00000514307 UBL5Q9BZL1 73 aa9.6□□□□□ -0.87
NUP54-214ENST00000514307 DYNC1H1Q14204 4646 aaKnown RBP9.6□□□□□ -0.87
NUP54-214ENST00000514307 IGFL1Q6UW32 110 aa9.59□□□□□ -0.87
NUP54-214ENST00000514307 SSBP3-AS1Q7Z2R9 100 aa9.59□□□□□ -0.87
NUP54-214ENST00000514307 Q8NBF4 154 aa9.59□□□□□ -0.87
NUP54-214ENST00000514307 CDIP1Q9H305 208 aa9.58□□□□□ -0.88
NUP54-214ENST00000514307 LINC00846Q9NV44 126 aa9.58□□□□□ -0.88
NUP54-214ENST00000514307 CRYGAP11844 174 aa9.57□□□□□ -0.88
NUP54-214ENST00000514307 LINC00643Q86TS7 51 aa9.57□□□□□ -0.88
NUP54-214ENST00000514307 HERC2O95714 4834 aa9.56□□□□□ -0.88
NUP54-214ENST00000514307 A0A1W2PNM2 257 aa9.56□□□□□ -0.88
NUP54-214ENST00000514307 SIGMAR1Q99720 223 aa9.56□□□□□ -0.88
NUP54-214ENST00000514307 ANAPC11Q9NYG5 84 aa9.56□□□□□ -0.88
NUP54-214ENST00000514307 Q6Q795 121 aa9.55□□□□□ -0.88
NUP54-214ENST00000514307 NREPQ16612 68 aa9.54□□□□□ -0.88
NUP54-214ENST00000514307 MOBPQ13875 183 aa9.53□□□□□ -0.88
NUP54-214ENST00000514307 LRP1BQ9NZR2 4599 aa9.5□□□□□ -0.89
NUP54-214ENST00000514307 TRBV7-7A0A0K0K1E9 115 aa9.49□□□□□ -0.89
NUP54-214ENST00000514307 CD164Q04900 197 aa9.49□□□□□ -0.89
NUP54-214ENST00000514307 KRTAP10-4P60372 401 aaPredicted RBP9.48□□□□□ -0.89
NUP54-214ENST00000514307 Q6ZVQ6 151 aa9.48□□□□□ -0.89
NUP54-214ENST00000514307 A0A0G2JQZ4 141 aa9.47□□□□□ -0.89
NUP54-214ENST00000514307 KRTAP1-4P0C5Y4 121 aa9.47□□□□□ -0.89
NUP54-214ENST00000514307 ATP5EP2Q5VTU8 51 aa9.47□□□□□ -0.89
NUP54-214ENST00000514307 SRRM2Q9UQ35 2752 aaKnown RBP9.46□□□□□ -0.89
NUP54-214ENST00000514307 C4orf48Q5BLP8 95 aa9.45□□□□□ -0.9
NUP54-214ENST00000514307 SS18L2Q9UHA2 77 aa9.45□□□□□ -0.9
NUP54-214ENST00000514307 RYR1P21817 5038 aa9.45□□□□□ -0.9
NUP54-214ENST00000514307 A0A087WSZ3 146 aa9.44□□□□□ -0.9
NUP54-214ENST00000514307 Q5VSD8 79 aa9.44□□□□□ -0.9
NUP54-214ENST00000514307 TYMSOSQ8TAI1 123 aa9.44□□□□□ -0.9
NUP54-214ENST00000514307 KRTAP17-1Q9BYP8 105 aa9.44□□□□□ -0.9
NUP54-214ENST00000514307 IMUPQ9GZP8 106 aa9.44□□□□□ -0.9
NUP54-214ENST00000514307 PCLOQ9Y6V0 5065 aa9.44□□□□□ -0.9
NUP54-214ENST00000514307 HSPG2P98160 4391 aa9.43□□□□□ -0.9
NUP54-214ENST00000514307 A0A087X002 238 aa9.43□□□□□ -0.9
NUP54-214ENST00000514307 MT-ATP8P03928 68 aa9.43□□□□□ -0.9
NUP54-214ENST00000514307 CXCL6P80162 114 aa9.42□□□□□ -0.9
NUP54-214ENST00000514307 KRTAP13-2Q52LG2 175 aa9.42□□□□□ -0.9
NUP54-214ENST00000514307 APOBP04114 4563 aaKnown RBP9.41□□□□□ -0.9
NUP54-214ENST00000514307 BPY2O14599 106 aa9.41□□□□□ -0.9
NUP54-214ENST00000514307 HRCT1Q6UXD1 115 aa9.41□□□□□ -0.9
NUP54-214ENST00000514307 Q8N1X5 172 aa9.41□□□□□ -0.9
NUP54-214ENST00000514307 KRTAP4-5Q9BYR2 181 aa9.4□□□□□ -0.9
NUP54-214ENST00000514307 IGKV3D-7A0A0C4DH55 119 aa9.39□□□□□ -0.91
NUP54-214ENST00000514307 SPAG11AQ6PDA7 123 aa9.39□□□□□ -0.91
NUP54-214ENST00000514307 J3KT08 172 aa9.37□□□□□ -0.91
NUP54-214ENST00000514307 PRR26Q8N8Z3 221 aa9.37□□□□□ -0.91
NUP54-214ENST00000514307 ABCA13Q86UQ4 5058 aa9.36□□□□□ -0.91
NUP54-214ENST00000514307 SPINK1P00995 79 aa9.35□□□□□ -0.91
NUP54-214ENST00000514307 HIST1H4AP62805 103 aaKnown RBP9.33□□□□□ -0.92
NUP54-214ENST00000514307 LIMD2Q9BT23 127 aa9.33□□□□□ -0.92
NUP54-214ENST00000514307 Q5XG85 94 aa9.32□□□□□ -0.92
NUP54-214ENST00000514307 LINC00472Q9H8W2 130 aa9.32□□□□□ -0.92
NUP54-214ENST00000514307 SCGB1A1P11684 91 aa9.31□□□□□ -0.92
NUP54-214ENST00000514307 ASB16-AS1Q495Z4 193 aa9.31□□□□□ -0.92
NUP54-214ENST00000514307 LINC00304Q8N9R0 145 aa9.31□□□□□ -0.92
NUP54-214ENST00000514307 VPS13BQ7Z7G8 4022 aa9.31□□□□□ -0.92
NUP54-214ENST00000514307 NDUFB1O75438 58 aa9.29□□□□□ -0.92
NUP54-214ENST00000514307 RPS29P62273 56 aaKnown RBP9.28□□□□□ -0.92
NUP54-214ENST00000514307 DEFB116Q30KQ4 102 aa9.27□□□□□ -0.93
NUP54-214ENST00000514307 IGKV4-1P06312 121 aa9.26□□□□□ -0.93
NUP54-214ENST00000514307 DSCR10P59022 87 aa9.25□□□□□ -0.93
NUP54-214ENST00000514307 A8MWP4 228 aa9.23□□□□□ -0.93
NUP54-214ENST00000514307 KRTAP10-8P60410 259 aa9.23□□□□□ -0.93
NUP54-214ENST00000514307 Q96NJ1 140 aa9.21□□□□□ -0.94
NUP54-214ENST00000514307 FAT1Q14517 4588 aa9.21□□□□□ -0.94
NUP54-214ENST00000514307 PRR15Q8IV56 129 aa9.2□□□□□ -0.94
NUP54-214ENST00000514307 OXTP01178 125 aa9.19□□□□□ -0.94
NUP54-214ENST00000514307 Q8N9L7 120 aa9.19□□□□□ -0.94
NUP54-214ENST00000514307 A0A087WVE0 104 aa9.18□□□□□ -0.94
NUP54-214ENST00000514307 C1orf195Q5TG92 126 aa9.18□□□□□ -0.94
NUP54-214ENST00000514307 K7EQZ3 153 aa9.17□□□□□ -0.94
NUP54-214ENST00000514307 FAM236AA0A1B0GUQ0 79 aa9.16□□□□□ -0.94
NUP54-214ENST00000514307 FAM236BA0A1B0GV22 79 aa9.16□□□□□ -0.94
NUP54-214ENST00000514307 A0A1B0GVX0 72 aa9.14□□□□□ -0.95
NUP54-214ENST00000514307 ATOX1O00244 68 aa9.13□□□□□ -0.95
NUP54-214ENST00000514307 HCG22E2RYF7 251 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms