RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 ZNF815PA8K554 130 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 COLCA2A8K830 154 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 SYS1-DBNDD2H3BUS1 97 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 TSPEAR-AS2P59090 65 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 JOSD1Q15040 202 aaPredicted RBP1.99□□□□□ -2.09
NUP54-212ENST00000513248 C5orf47Q569G3 176 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 C9orf153Q5TBE3 101 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 SCGB1D4Q6XE38 83 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 SMCR5Q8TEV8 140 aa1.99□□□□□ -2.09
NUP54-212ENST00000513248 SPANXB1Q9NS25 103 aaPredicted RBP1.99□□□□□ -2.09
NUP54-212ENST00000513248 TRAV23DV6A0A075B6W5 121 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 TRBV10-2A0A0K0K1G8 114 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BKO60814 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BJP06899 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BOP23527 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 S100A2P29034 98 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BBP33778 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BDP58876 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BCP62807 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST2H2BEQ16778 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.98□□□□□ -2.09
NUP54-212ENST00000513248 SPAG11AQ6PDA7 123 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 C3orf22Q8N5N4 141 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 LINC00337Q8N6G1 96 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 Q8NDZ9 215 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 COPS9Q8WXC6 57 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BHQ93079 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 SPRR4Q96PI1 79 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BNQ99877 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 HIST1H2BMQ99879 126 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 RETNLBQ9BQ08 111 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 KCNQ1DNQ9H478 68 aa1.98□□□□□ -2.09
NUP54-212ENST00000513248 A0A0U1RQV1 116 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 A6NDN8 102 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 PCP4L1A6NKN8 68 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 HSBP1L1C9JCN9 74 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 NDUFC2O95298 119 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 S100A6P06703 90 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 C3orf79P0CE67 100 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 AKR1D1P51857 326 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 TAL2Q16559 108 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 KRTAP13-2Q52LG2 175 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 SLC25A34Q6PIV7 304 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 KRTAP13-1Q8IUC0 172 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 ATOH7Q8N100 152 aa1.97□□□□□ -2.09
NUP54-212ENST00000513248 ZNF73O43830 326 aaPredicted RBP1.96□□□□□ -2.1
NUP54-212ENST00000513248 TIMM17BO60830 172 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 COX7BP24311 80 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 LINC01545Q5VT33 79 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 Q6ZRX8 168 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 DEFB105AQ8NG35 78 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 LINC00308Q8TCZ7 52 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 SPANXDQ9BXN6 97 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 SPANXCQ9NY87 97 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 LAMTOR3Q9UHA4 124 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 PKHD1L1Q86WI1 4243 aa1.96□□□□□ -2.1
NUP54-212ENST00000513248 LRP1Q07954 4544 aaKnown RBP1.95□□□□□ -2.1
NUP54-212ENST00000513248 LOC107984156A0A0G2JMH3 177 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 SLC25A20O43772 301 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 ERC2-IT1O76042 136 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 SPINK1P00995 79 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 IGLV6-57P01721 117 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 SPRR1AP35321 89 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 CTAG1AP78358 180 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 HRCT1Q6UXD1 115 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 SOSTDC1Q6X4U4 206 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 SSBP3-AS1Q7Z2R9 100 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 ARL17AQ8IVW1 177 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 TTTY13Q9BZ97 58 aa1.95□□□□□ -2.1
NUP54-212ENST00000513248 IFITM1P13164 125 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 S100A1P23297 94 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 VAMP3Q15836 100 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 C6orf99Q4VX62 202 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 IGFL1Q6UW32 110 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 FP248Q71RG6 208 aaPredicted RBP1.94□□□□□ -2.1
NUP54-212ENST00000513248 MUSTN1Q8IVN3 82 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 ST20-AS1Q8NBB2 130 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 Q9BRP9 147 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 LIMD2Q9BT23 127 aa1.94□□□□□ -2.1
NUP54-212ENST00000513248 NHP2Q9NX24 153 aaKnown RBP1.94□□□□□ -2.1
NUP54-212ENST00000513248 TRAV13-2A0A0B4J235 113 aa1.93□□□□□ -2.1
NUP54-212ENST00000513248 F8WEM9 126 aa1.93□□□□□ -2.1
NUP54-212ENST00000513248 TPRXLQ17RH7 258 aa1.93□□□□□ -2.1
NUP54-212ENST00000513248 PRO1933Q9H354 126 aa1.93□□□□□ -2.1
NUP54-212ENST00000513248 FAT3Q8TDW7 4589 aa1.93□□□□□ -2.1
NUP54-212ENST00000513248 TEX49A0A1B0GTD5 131 aa1.92□□□□□ -2.1
NUP54-212ENST00000513248 H7C2G1 150 aa1.92□□□□□ -2.1
NUP54-212ENST00000513248 SNCGO76070 127 aa1.92□□□□□ -2.1
NUP54-212ENST00000513248 ELOF1P60002 83 aaKnown RBP1.92□□□□□ -2.1
NUP54-212ENST00000513248 DNAH8Q96JB1 4490 aa1.92□□□□□ -2.1
NUP54-212ENST00000513248 TRBV7-6A0A0J9YX20 115 aa1.91□□□□□ -2.1
NUP54-212ENST00000513248 RPS29P62273 56 aaKnown RBP1.91□□□□□ -2.1
NUP54-212ENST00000513248 HIST3H2BBQ8N257 126 aa1.91□□□□□ -2.1
NUP54-212ENST00000513248 SMIM11BQ8TCY0 68 aa1.91□□□□□ -2.1
NUP54-212ENST00000513248 RAB37Q96AX2 223 aa1.91□□□□□ -2.1
NUP54-212ENST00000513248 C12orf57Q99622 126 aa1.91□□□□□ -2.1
NUP54-212ENST00000513248 HIST1H2BLQ99880 126 aa1.91□□□□□ -2.1
NUP54-212ENST00000513248 hADV29S1A0JD25 119 aa1.9□□□□□ -2.11
NUP54-212ENST00000513248 C9orf92A6NGG3 77 aa1.9□□□□□ -2.11
NUP54-212ENST00000513248 TCL1BO95988 128 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms