RNA–Protein interactions for RNA: ENST00000512293.1

PDLIM3-207, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 581 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-207ENST00000512293 HIST1H2BBP33778 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST1H2BDP58876 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST1H2BCP62807 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST2H2BEQ16778 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST1H2BHQ93079 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST1H2BNQ99877 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 HIST1H2BMQ99879 126 aa8.99□□□□□ -0.97
PDLIM3-207ENST00000512293 C20orf202A1L168 122 aa8.98□□□□□ -0.97
PDLIM3-207ENST00000512293 C3orf79P0CE67 100 aa8.98□□□□□ -0.97
PDLIM3-207ENST00000512293 VAMP3Q15836 100 aa8.97□□□□□ -0.97
PDLIM3-207ENST00000512293 IGFL1Q6UW32 110 aa8.97□□□□□ -0.97
PDLIM3-207ENST00000512293 LINC00575Q6W349 94 aa8.97□□□□□ -0.97
PDLIM3-207ENST00000512293 OCIAD2Q56VL3 154 aa8.95□□□□□ -0.98
PDLIM3-207ENST00000512293 FCGBPQ9Y6R7 5405 aaPredicted RBP8.94□□□□□ -0.98
PDLIM3-207ENST00000512293 ANKRD39Q53RE8 183 aa8.94□□□□□ -0.98
PDLIM3-207ENST00000512293 Q6ZQY7 126 aa8.94□□□□□ -0.98
PDLIM3-207ENST00000512293 hADV29S1A0JD25 119 aa8.93□□□□□ -0.98
PDLIM3-207ENST00000512293 C20orf166-AS1Q96NR2 134 aa8.92□□□□□ -0.98
PDLIM3-207ENST00000512293 LST1O00453 97 aa8.91□□□□□ -0.98
PDLIM3-207ENST00000512293 PPDPFLQ8WWR9 84 aa8.91□□□□□ -0.98
PDLIM3-207ENST00000512293 Q96NJ1 140 aa8.91□□□□□ -0.98
PDLIM3-207ENST00000512293 KRTDAPP60985 99 aa8.9□□□□□ -0.98
PDLIM3-207ENST00000512293 TRBV20-1A0A075B6N2 111 aa8.89□□□□□ -0.99
PDLIM3-207ENST00000512293 A8MUU9 505 aa8.89□□□□□ -0.99
PDLIM3-207ENST00000512293 COA6Q5JTJ3 125 aaKnown RBP8.89□□□□□ -0.99
PDLIM3-207ENST00000512293 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.88□□□□□ -0.99
PDLIM3-207ENST00000512293 SCGB1D1O95968 90 aa8.87□□□□□ -0.99
PDLIM3-207ENST00000512293 SS18L2Q9UHA2 77 aa8.85□□□□□ -0.99
PDLIM3-207ENST00000512293 SNRPEP62304 92 aaKnown RBP8.84□□□□□ -0.99
PDLIM3-207ENST00000512293 MT2AP02795 61 aa8.83□□□□□ -1
PDLIM3-207ENST00000512293 ATOH7Q8N100 152 aa8.83□□□□□ -1
PDLIM3-207ENST00000512293 SNHG12Q9BXW3 62 aa8.82□□□□□ -1
PDLIM3-207ENST00000512293 BVES-AS1Q5T3Y7 98 aa8.8□□□□□ -1
PDLIM3-207ENST00000512293 H3BUT2 72 aa8.79□□□□□ -1
PDLIM3-207ENST00000512293 LCE2BO14633 110 aa8.79□□□□□ -1
PDLIM3-207ENST00000512293 KRTAP19-1Q8IUB9 90 aa8.79□□□□□ -1
PDLIM3-207ENST00000512293 TEN1Q86WV5 123 aa8.77□□□□□ -1.01
PDLIM3-207ENST00000512293 MT1FP04733 61 aa8.76□□□□□ -1.01
PDLIM3-207ENST00000512293 KRTAP9-3Q9BYQ3 159 aa8.76□□□□□ -1.01
PDLIM3-207ENST00000512293 MACF1Q9UPN3 7388 aaKnown RBP8.76□□□□□ -1.01
PDLIM3-207ENST00000512293 MPLKIPQ8TAP9 179 aa8.73□□□□□ -1.01
PDLIM3-207ENST00000512293 FAM236DA0A1B0GTK5 79 aa8.71□□□□□ -1.02
PDLIM3-207ENST00000512293 KRTAP16-1A8MUX0 517 aa8.71□□□□□ -1.02
PDLIM3-207ENST00000512293 FAM236CP0DP71 79 aa8.71□□□□□ -1.02
PDLIM3-207ENST00000512293 C12orf57Q99622 126 aa8.71□□□□□ -1.02
PDLIM3-207ENST00000512293 SYNE2Q8WXH0 6885 aaKnown RBP8.71□□□□□ -1.02
PDLIM3-207ENST00000512293 A0A087WSZ3 146 aa8.7□□□□□ -1.02
PDLIM3-207ENST00000512293 DSCR10P59022 87 aa8.69□□□□□ -1.02
PDLIM3-207ENST00000512293 KRTAP10-10P60014 251 aa8.69□□□□□ -1.02
PDLIM3-207ENST00000512293 RBM12B-AS1Q9P1G2 102 aa8.69□□□□□ -1.02
PDLIM3-207ENST00000512293 SNCGO76070 127 aa8.68□□□□□ -1.02
PDLIM3-207ENST00000512293 NDUFV3P56181 108 aaKnown RBP8.68□□□□□ -1.02
PDLIM3-207ENST00000512293 HRES1P13985 223 aa8.67□□□□□ -1.02
PDLIM3-207ENST00000512293 S100A1P23297 94 aa8.67□□□□□ -1.02
PDLIM3-207ENST00000512293 HSBP1L1C9JCN9 74 aa8.66□□□□□ -1.02
PDLIM3-207ENST00000512293 LINC00313P59037 77 aa8.65□□□□□ -1.02
PDLIM3-207ENST00000512293 H0YGX0 51 aa8.64□□□□□ -1.03
PDLIM3-207ENST00000512293 HIST1H4GQ99525 98 aa8.63□□□□□ -1.03
PDLIM3-207ENST00000512293 LINC00846Q9NV44 126 aa8.63□□□□□ -1.03
PDLIM3-207ENST00000512293 H3BMG7 143 aa8.62□□□□□ -1.03
PDLIM3-207ENST00000512293 GHRHP01286 108 aa8.62□□□□□ -1.03
PDLIM3-207ENST00000512293 SIGMAR1Q99720 223 aa8.62□□□□□ -1.03
PDLIM3-207ENST00000512293 NOTCH2NLQ7Z3S9 236 aa8.61□□□□□ -1.03
PDLIM3-207ENST00000512293 HIST3H2BBQ8N257 126 aa8.61□□□□□ -1.03
PDLIM3-207ENST00000512293 A0A1W2PNM2 257 aa8.59□□□□□ -1.03
PDLIM3-207ENST00000512293 FAM218AQ96MZ4 157 aa8.59□□□□□ -1.03
PDLIM3-207ENST00000512293 A0A1B0GX51 115 aa8.58□□□□□ -1.04
PDLIM3-207ENST00000512293 KRTAP19-6Q3LI70 58 aa8.58□□□□□ -1.04
PDLIM3-207ENST00000512293 HIST1H2BLQ99880 126 aa8.58□□□□□ -1.04
PDLIM3-207ENST00000512293 IGKV4-1P06312 121 aa8.57□□□□□ -1.04
PDLIM3-207ENST00000512293 TRBV7-4A0A0J9YYF1 115 aa8.55□□□□□ -1.04
PDLIM3-207ENST00000512293 MTURNQ8N3F0 131 aa8.55□□□□□ -1.04
PDLIM3-207ENST00000512293 RAB37Q96AX2 223 aa8.55□□□□□ -1.04
PDLIM3-207ENST00000512293 A0A0B4J2C4 111 aa8.54□□□□□ -1.04
PDLIM3-207ENST00000512293 COX8AP10176 69 aa8.54□□□□□ -1.04
PDLIM3-207ENST00000512293 DLEU1O43261 78 aa8.53□□□□□ -1.04
PDLIM3-207ENST00000512293 FABP2P12104 132 aa8.53□□□□□ -1.04
PDLIM3-207ENST00000512293 S100A2P29034 98 aa8.53□□□□□ -1.04
PDLIM3-207ENST00000512293 LINC00472Q9H8W2 130 aa8.52□□□□□ -1.05
PDLIM3-207ENST00000512293 ANKRD29Q8N6D5 301 aa8.49□□□□□ -1.05
PDLIM3-207ENST00000512293 HIGD1BQ9P298 99 aa8.47□□□□□ -1.05
PDLIM3-207ENST00000512293 IGHV6-1A0A0B4J1U7 121 aa8.46□□□□□ -1.06
PDLIM3-207ENST00000512293 H3BQ85 93 aa8.46□□□□□ -1.06
PDLIM3-207ENST00000512293 A8MWP4 228 aa8.44□□□□□ -1.06
PDLIM3-207ENST00000512293 C8orf87E5RJ46 101 aa8.44□□□□□ -1.06
PDLIM3-207ENST00000512293 S100A6P06703 90 aa8.44□□□□□ -1.06
PDLIM3-207ENST00000512293 DEFB116Q30KQ4 102 aa8.44□□□□□ -1.06
PDLIM3-207ENST00000512293 PRO1854Q9UHT4 67 aa8.43□□□□□ -1.06
PDLIM3-207ENST00000512293 KRTAP6-3Q3LI67 103 aa8.42□□□□□ -1.06
PDLIM3-207ENST00000512293 ZCCHC13Q8WW36 166 aaKnown RBP8.42□□□□□ -1.06
PDLIM3-207ENST00000512293 SPINK7P58062 85 aa8.41□□□□□ -1.06
PDLIM3-207ENST00000512293 A0A1B0GVX0 72 aa8.4□□□□□ -1.06
PDLIM3-207ENST00000512293 TRACP01848 142 aa8.4□□□□□ -1.06
PDLIM3-207ENST00000512293 CCKP06307 115 aa8.4□□□□□ -1.06
PDLIM3-207ENST00000512293 ORMDL1Q9P0S3 153 aa8.4□□□□□ -1.06
PDLIM3-207ENST00000512293 TMEM256-PLSCR3K7ERE1 68 aa8.39□□□□□ -1.07
PDLIM3-207ENST00000512293 TRIAP1O43715 76 aa8.39□□□□□ -1.07
PDLIM3-207ENST00000512293 TMEM238LA0A1B0GVL6 79 aa8.38□□□□□ -1.07
PDLIM3-207ENST00000512293 A6NJY4 79 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms