RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 XIRP2A4UGR9 3374 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 DNAH14Q0VDD8 3507 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 ETDCA0A1B0GVM5 59 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 K7EIL1 84 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 NDUFA4O00483 81 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 COX7BP24311 80 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 SPINK7P58062 85 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 SPTSSBQ8NFR3 76 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 KCNQ1DNQ9H478 68 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 CACNA1HO95180 2353 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 IGF2RP11717 2491 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 MAP1BP46821 2468 aaKnown RBP0.91□□□□□ -2.26
USP53-204ENST00000507906 HTTP42858 3142 aa0.91□□□□□ -2.26
USP53-204ENST00000507906 SPG11Q96JI7 2443 aa0.9□□□□□ -2.26
USP53-204ENST00000507906 USP34Q70CQ2 3546 aa0.9□□□□□ -2.26
USP53-204ENST00000507906 CEP290O15078 2479 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 LINC00959A0A1B0GUT2 108 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 ZZEF1O43149 2961 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 NDUFB1O75438 58 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 LY6G6CO95867 125 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 LINC00158P58513 81 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 MINOS1Q5TGZ0 78 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 PLAC4Q8WY50 150 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 CHD7Q9P2D1 2997 aa0.9□□□□□ -2.27
USP53-204ENST00000507906 SPTA1P02549 2419 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 NBEAQ8NFP9 2946 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 FRYQ5TBA9 3013 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 PTPN13Q12923 2485 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 C2CD3Q4AC94 2353 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 G3V318 75 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 REV3LO60673 3130 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 LAMA2P24043 3122 aaKnown RBP0.89□□□□□ -2.27
USP53-204ENST00000507906 TRANK1O15050 2925 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 NCOR2Q9Y618 2525 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 DSPP15924 2871 aaKnown RBP0.89□□□□□ -2.27
USP53-204ENST00000507906 SPTBN4Q9H254 2564 aa0.89□□□□□ -2.27
USP53-204ENST00000507906 MUC5BQ9HC84 5762 aaPredicted RBP0.88□□□□□ -2.27
USP53-204ENST00000507906 BRCA2P51587 3418 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 FRYLO94915 3013 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 SPTAN1Q13813 2472 aaKnown RBP0.88□□□□□ -2.27
USP53-204ENST00000507906 IGLV5-48A0A075B6I7 105 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 SPAG11BQ08648 103 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 COX17Q14061 63 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 SPINK13Q1W4C9 94 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 Q8IZM0 81 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 SPRR4Q96PI1 79 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 RHPN1-AS1Q9BWJ2 59 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 PRO3102Q9H379 93 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 TOMM7Q9P0U1 55 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 DCHS1Q96JQ0 3298 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 ANKRD17O75179 2603 aaKnown RBP0.88□□□□□ -2.27
USP53-204ENST00000507906 PRUNE2Q8WUY3 3088 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 FREM2Q5SZK8 3169 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 NBASA2RRP1 2371 aa0.88□□□□□ -2.27
USP53-204ENST00000507906 GVINP1Q7Z2Y8 2422 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 CSPG4Q6UVK1 2322 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 TRIOO75962 3097 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 LAMA1P25391 3075 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 LAMA3Q16787 3333 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 H0Y9P7 68 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 H3BUA1 57 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 K7EQZ3 153 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 SPATA8Q6RVD6 105 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 SPEGQ15772 3267 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 CELSR2Q9HCU4 2923 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 KALRNO60229 2985 aa0.87□□□□□ -2.27
USP53-204ENST00000507906 CHD9Q3L8U1 2897 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 SPTBN5Q9NRC6 3674 aaKnown RBP0.86□□□□□ -2.27
USP53-204ENST00000507906 GVQW2A0A096LPI5 108 aaPredicted RBP0.86□□□□□ -2.27
USP53-204ENST00000507906 A0A0D9SG42 100 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 LYNX1G3V0Z9 82 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 DEFB112Q30KQ8 113 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 SPAG11AQ6PDA7 123 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 WFDC13Q8IUB5 93 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 USMG5Q96IX5 58 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 TENM2Q9NT68 2774 aa0.86□□□□□ -2.27
USP53-204ENST00000507906 TNRC18O15417 2968 aaPredicted RBP0.86□□□□□ -2.27
USP53-204ENST00000507906 AHNAKQ09666 5890 aaKnown RBP0.86□□□□□ -2.27
USP53-204ENST00000507906 VCANP13611 3396 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 ANKHD1Q8IWZ3 2542 aaKnown RBP0.85□□□□□ -2.27
USP53-204ENST00000507906 WDFY4Q6ZS81 3184 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 DEFB131BA0A096LNP1 70 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 TRGV1A0A0A0MS02 117 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 ITPR1Q14643 2758 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 C10orf99Q6UWK7 81 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 WDFY3Q8IZQ1 3526 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 CDH23Q9H251 3354 aa0.85□□□□□ -2.27
USP53-204ENST00000507906 DMXL2Q8TDJ6 3036 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 CSMD1Q96PZ7 3565 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 HIVEP3Q5T1R4 2406 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 PIEZO2Q9H5I5 2752 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 MMP24-AS1A0A0U1RRL7 71 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 DEFB131AP59861 70 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 DEFB109BQ30KR1 87 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 CLPSL2Q6UWE3 100 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 C6orf48Q9UBA6 75 aa0.84□□□□□ -2.27
USP53-204ENST00000507906 DMDP11532 3685 aa0.84□□□□□ -2.28
USP53-204ENST00000507906 HRNRQ86YZ3 2850 aaPredicted RBP0.84□□□□□ -2.28
USP53-204ENST00000507906 F8P00451 2351 aa0.84□□□□□ -2.28
USP53-204ENST00000507906 UBR5O95071 2799 aaPredicted RBP0.84□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms