RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SMIM11BQ8TCY0 68 aa11.1□□□□□ -0.63
SQSTM1-210ENST00000506042 A0A0G2JQZ4 141 aa11.09□□□□□ -0.63
SQSTM1-210ENST00000506042 SNRPEP62304 92 aaKnown RBP11.08□□□□□ -0.64
SQSTM1-210ENST00000506042 SCGB1D1O95968 90 aa11.07□□□□□ -0.64
SQSTM1-210ENST00000506042 TRBV7-7A0A0K0K1E9 115 aa11.06□□□□□ -0.64
SQSTM1-210ENST00000506042 hADV29S1A0JD25 119 aa11.06□□□□□ -0.64
SQSTM1-210ENST00000506042 Q75L30 129 aa11.06□□□□□ -0.64
SQSTM1-210ENST00000506042 PPDPFLQ8WWR9 84 aa11.04□□□□□ -0.64
SQSTM1-210ENST00000506042 CFC1P0CG37 223 aa11.03□□□□□ -0.64
SQSTM1-210ENST00000506042 LINC00575Q6W349 94 aa11.03□□□□□ -0.64
SQSTM1-210ENST00000506042 Q6ZQY7 126 aa11.03□□□□□ -0.64
SQSTM1-210ENST00000506042 OBSCN-AS1Q96MR7 158 aa11.03□□□□□ -0.64
SQSTM1-210ENST00000506042 SNCGO76070 127 aa11.02□□□□□ -0.65
SQSTM1-210ENST00000506042 SS18L2Q9UHA2 77 aa11.02□□□□□ -0.65
SQSTM1-210ENST00000506042 TRBV20-1A0A075B6N2 111 aa11.01□□□□□ -0.65
SQSTM1-210ENST00000506042 LST1O00453 97 aa11.01□□□□□ -0.65
SQSTM1-210ENST00000506042 ANKRD39Q53RE8 183 aa11.01□□□□□ -0.65
SQSTM1-210ENST00000506042 OCIAD2Q56VL3 154 aa11.01□□□□□ -0.65
SQSTM1-210ENST00000506042 SNHG12Q9BXW3 62 aa11□□□□□ -0.65
SQSTM1-210ENST00000506042 BVES-AS1Q5T3Y7 98 aa10.98□□□□□ -0.65
SQSTM1-210ENST00000506042 IGFL1Q6UW32 110 aa10.98□□□□□ -0.65
SQSTM1-210ENST00000506042 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.98□□□□□ -0.65
SQSTM1-210ENST00000506042 HSBP1L1C9JCN9 74 aa10.97□□□□□ -0.65
SQSTM1-210ENST00000506042 COA6Q5JTJ3 125 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-210ENST00000506042 ATOH7Q8N100 152 aa10.97□□□□□ -0.65
SQSTM1-210ENST00000506042 Q96NJ1 140 aa10.95□□□□□ -0.66
SQSTM1-210ENST00000506042 C12orf57Q99622 126 aa10.94□□□□□ -0.66
SQSTM1-210ENST00000506042 GHRHP01286 108 aa10.9□□□□□ -0.66
SQSTM1-210ENST00000506042 TEN1Q86WV5 123 aa10.84□□□□□ -0.67
SQSTM1-210ENST00000506042 C20orf166-AS1Q96NR2 134 aa10.83□□□□□ -0.68
SQSTM1-210ENST00000506042 S100A2P29034 98 aa10.82□□□□□ -0.68
SQSTM1-210ENST00000506042 HIST1H4GQ99525 98 aa10.82□□□□□ -0.68
SQSTM1-210ENST00000506042 H3BUT2 72 aa10.81□□□□□ -0.68
SQSTM1-210ENST00000506042 FAM236DA0A1B0GTK5 79 aa10.8□□□□□ -0.68
SQSTM1-210ENST00000506042 FAM236CP0DP71 79 aa10.8□□□□□ -0.68
SQSTM1-210ENST00000506042 A8MUU9 505 aa10.79□□□□□ -0.68
SQSTM1-210ENST00000506042 FLGP20930 4061 aaPredicted RBP10.79□□□□□ -0.68
SQSTM1-210ENST00000506042 H0YGX0 51 aa10.77□□□□□ -0.69
SQSTM1-210ENST00000506042 KRTAP9-7A8MTY7 169 aa10.75□□□□□ -0.69
SQSTM1-210ENST00000506042 RAB37Q96AX2 223 aa10.75□□□□□ -0.69
SQSTM1-210ENST00000506042 NDUFV3P56181 108 aaKnown RBP10.74□□□□□ -0.69
SQSTM1-210ENST00000506042 RBM12B-AS1Q9P1G2 102 aa10.74□□□□□ -0.69
SQSTM1-210ENST00000506042 A0A087WSZ3 146 aa10.73□□□□□ -0.69
SQSTM1-210ENST00000506042 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-210ENST00000506042 SIGMAR1Q99720 223 aa10.73□□□□□ -0.69
SQSTM1-210ENST00000506042 H3BMG7 143 aa10.69□□□□□ -0.7
SQSTM1-210ENST00000506042 LINC00313P59037 77 aa10.68□□□□□ -0.7
SQSTM1-210ENST00000506042 KRTAP9-8Q9BYQ0 159 aa10.68□□□□□ -0.7
SQSTM1-210ENST00000506042 A0A1B0GX51 115 aa10.67□□□□□ -0.7
SQSTM1-210ENST00000506042 FABP2P12104 132 aa10.66□□□□□ -0.7
SQSTM1-210ENST00000506042 S100A6P06703 90 aa10.65□□□□□ -0.7
SQSTM1-210ENST00000506042 DSCR10P59022 87 aa10.65□□□□□ -0.7
SQSTM1-210ENST00000506042 MTURNQ8N3F0 131 aa10.65□□□□□ -0.7
SQSTM1-210ENST00000506042 HIST1H2BLQ99880 126 aa10.65□□□□□ -0.7
SQSTM1-210ENST00000506042 HIST3H2BBQ8N257 126 aa10.64□□□□□ -0.71
SQSTM1-210ENST00000506042 H3BQ85 93 aa10.62□□□□□ -0.71
SQSTM1-210ENST00000506042 LINC00846Q9NV44 126 aa10.62□□□□□ -0.71
SQSTM1-210ENST00000506042 A0A0B4J2C4 111 aa10.61□□□□□ -0.71
SQSTM1-210ENST00000506042 COX8AP10176 69 aa10.61□□□□□ -0.71
SQSTM1-210ENST00000506042 DLEU1O43261 78 aa10.6□□□□□ -0.71
SQSTM1-210ENST00000506042 IGKV4-1P06312 121 aa10.6□□□□□ -0.71
SQSTM1-210ENST00000506042 TMEM238LA0A1B0GVL6 79 aa10.59□□□□□ -0.71
SQSTM1-210ENST00000506042 A6NJY4 79 aa10.59□□□□□ -0.71
SQSTM1-210ENST00000506042 DNAL4O96015 105 aa10.58□□□□□ -0.72
SQSTM1-210ENST00000506042 ANKRD29Q8N6D5 301 aa10.57□□□□□ -0.72
SQSTM1-210ENST00000506042 TRBV7-4A0A0J9YYF1 115 aa10.55□□□□□ -0.72
SQSTM1-210ENST00000506042 KRTAP10-10P60014 251 aa10.53□□□□□ -0.72
SQSTM1-210ENST00000506042 HIGD1BQ9P298 99 aa10.53□□□□□ -0.72
SQSTM1-210ENST00000506042 MT2AP02795 61 aa10.52□□□□□ -0.73
SQSTM1-210ENST00000506042 FAM218AQ96MZ4 157 aa10.52□□□□□ -0.73
SQSTM1-210ENST00000506042 PRO1854Q9UHT4 67 aa10.52□□□□□ -0.73
SQSTM1-210ENST00000506042 TRACP01848 142 aa10.5□□□□□ -0.73
SQSTM1-210ENST00000506042 ORMDL1Q9P0S3 153 aa10.5□□□□□ -0.73
SQSTM1-210ENST00000506042 A0A1W2PNM2 257 aa10.49□□□□□ -0.73
SQSTM1-210ENST00000506042 S100A1P23297 94 aa10.49□□□□□ -0.73
SQSTM1-210ENST00000506042 IGHV6-1A0A0B4J1U7 121 aa10.47□□□□□ -0.73
SQSTM1-210ENST00000506042 TMEM256-PLSCR3K7ERE1 68 aa10.47□□□□□ -0.73
SQSTM1-210ENST00000506042 C8orf87E5RJ46 101 aa10.46□□□□□ -0.73
SQSTM1-210ENST00000506042 KRTAP16-1A8MUX0 517 aa10.45□□□□□ -0.74
SQSTM1-210ENST00000506042 COX6CP09669 75 aa10.45□□□□□ -0.74
SQSTM1-210ENST00000506042 C14orf144Q96I85 54 aa10.45□□□□□ -0.74
SQSTM1-210ENST00000506042 CCKP06307 115 aa10.44□□□□□ -0.74
SQSTM1-210ENST00000506042 HRES1P13985 223 aa10.44□□□□□ -0.74
SQSTM1-210ENST00000506042 CEND1Q8N111 149 aa10.44□□□□□ -0.74
SQSTM1-210ENST00000506042 MPLKIPQ8TAP9 179 aa10.44□□□□□ -0.74
SQSTM1-210ENST00000506042 C21orf62-AS1Q17RA5 79 aa10.43□□□□□ -0.74
SQSTM1-210ENST00000506042 KRTAP19-1Q8IUB9 90 aa10.42□□□□□ -0.74
SQSTM1-210ENST00000506042 MT1FP04733 61 aa10.41□□□□□ -0.74
SQSTM1-210ENST00000506042 PSMB2P49721 201 aa10.41□□□□□ -0.74
SQSTM1-210ENST00000506042 SPATA45Q537H7 98 aa10.41□□□□□ -0.74
SQSTM1-210ENST00000506042 VAMP8Q9BV40 100 aa10.41□□□□□ -0.74
SQSTM1-210ENST00000506042 PAM16Q9Y3D7 125 aa10.41□□□□□ -0.74
SQSTM1-210ENST00000506042 TRIAP1O43715 76 aa10.39□□□□□ -0.75
SQSTM1-210ENST00000506042 LINC00472Q9H8W2 130 aa10.39□□□□□ -0.75
SQSTM1-210ENST00000506042 A0A1B0GV72 72 aa10.38□□□□□ -0.75
SQSTM1-210ENST00000506042 DEFB116Q30KQ4 102 aa10.38□□□□□ -0.75
SQSTM1-210ENST00000506042 NOTCH2NLQ7Z3S9 236 aa10.38□□□□□ -0.75
SQSTM1-210ENST00000506042 A0A1B0GVX0 72 aa10.36□□□□□ -0.75
SQSTM1-210ENST00000506042 J3KT08 172 aa10.36□□□□□ -0.75
SQSTM1-210ENST00000506042 LCE2BO14633 110 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms