RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 BAALC-AS2P0C853 105 aa11.52□□□□□ -0.56
USP39-218ENST00000493829 SPRR1BP22528 89 aa11.52□□□□□ -0.56
USP39-218ENST00000493829 SMIM29Q86T20 159 aa11.51□□□□□ -0.57
USP39-218ENST00000493829 PRR26Q8N8Z3 221 aa11.49□□□□□ -0.57
USP39-218ENST00000493829 LAMTOR3Q9UHA4 124 aa11.49□□□□□ -0.57
USP39-218ENST00000493829 C9orf153Q5TBE3 101 aa11.49□□□□□ -0.57
USP39-218ENST00000493829 PPDPFLQ8WWR9 84 aa11.49□□□□□ -0.57
USP39-218ENST00000493829 TMEM256-PLSCR3K7ERE1 68 aa11.48□□□□□ -0.57
USP39-218ENST00000493829 GHRHP01286 108 aa11.48□□□□□ -0.57
USP39-218ENST00000493829 CRYGAP11844 174 aa11.48□□□□□ -0.57
USP39-218ENST00000493829 FAM229BQ4G0N7 80 aa11.48□□□□□ -0.57
USP39-218ENST00000493829 ABCA13Q86UQ4 5058 aa11.48□□□□□ -0.57
USP39-218ENST00000493829 FLG2Q5D862 2391 aaPredicted RBP11.47□□□□□ -0.57
USP39-218ENST00000493829 MOBPQ13875 183 aa11.47□□□□□ -0.57
USP39-218ENST00000493829 F8WEM9 126 aa11.46□□□□□ -0.57
USP39-218ENST00000493829 NDUFV3P56181 108 aaKnown RBP11.46□□□□□ -0.57
USP39-218ENST00000493829 KRTAP13-2Q52LG2 175 aa11.46□□□□□ -0.57
USP39-218ENST00000493829 ANKRD29Q8N6D5 301 aa11.45□□□□□ -0.58
USP39-218ENST00000493829 H3BQ85 93 aa11.44□□□□□ -0.58
USP39-218ENST00000493829 H3BT86 120 aa11.43□□□□□ -0.58
USP39-218ENST00000493829 SMCPP49901 116 aaPredicted RBP11.43□□□□□ -0.58
USP39-218ENST00000493829 PRO0461Q9UI25 63 aa11.43□□□□□ -0.58
USP39-218ENST00000493829 UBE2V1Q13404 147 aa11.42□□□□□ -0.58
USP39-218ENST00000493829 LINC01600Q96MT4 127 aa11.42□□□□□ -0.58
USP39-218ENST00000493829 A0A0G2JQZ4 141 aa11.41□□□□□ -0.58
USP39-218ENST00000493829 TYMSOSQ8TAI1 123 aa11.41□□□□□ -0.58
USP39-218ENST00000493829 LRP1Q07954 4544 aaKnown RBP11.41□□□□□ -0.58
USP39-218ENST00000493829 MYCBP2O75592 4640 aa11.4□□□□□ -0.58
USP39-218ENST00000493829 Q8NBF4 154 aa11.4□□□□□ -0.58
USP39-218ENST00000493829 FAT3Q8TDW7 4589 aa11.36□□□□□ -0.59
USP39-218ENST00000493829 F8W1H4 67 aa11.35□□□□□ -0.59
USP39-218ENST00000493829 IGFL1Q6UW32 110 aa11.33□□□□□ -0.6
USP39-218ENST00000493829 IGLV8-61A0A075B6I0 122 aa11.33□□□□□ -0.6
USP39-218ENST00000493829 OXTP01178 125 aa11.33□□□□□ -0.6
USP39-218ENST00000493829 RBM3P98179 157 aaKnown RBP11.33□□□□□ -0.6
USP39-218ENST00000493829 HRCT1Q6UXD1 115 aa11.32□□□□□ -0.6
USP39-218ENST00000493829 KRTAP10-8P60410 259 aa11.31□□□□□ -0.6
USP39-218ENST00000493829 C14orf132Q9NPU4 83 aa11.31□□□□□ -0.6
USP39-218ENST00000493829 MT1HL1P0DM35 61 aa11.3□□□□□ -0.6
USP39-218ENST00000493829 SSBP3-AS1Q7Z2R9 100 aa11.3□□□□□ -0.6
USP39-218ENST00000493829 JMJD7-PLA2G4BH0Y9G9 81 aa11.3□□□□□ -0.6
USP39-218ENST00000493829 Q6JHZ5 121 aa11.3□□□□□ -0.6
USP39-218ENST00000493829 KRTAP29-1A8MX34 341 aaPredicted RBP11.29□□□□□ -0.6
USP39-218ENST00000493829 ETDBQ3ZM63 59 aa11.29□□□□□ -0.6
USP39-218ENST00000493829 DSCR8Q96T75 97 aa11.29□□□□□ -0.6
USP39-218ENST00000493829 PCLOQ9Y6V0 5065 aa11.28□□□□□ -0.6
USP39-218ENST00000493829 LINC00304Q8N9R0 145 aa11.27□□□□□ -0.6
USP39-218ENST00000493829 OBSCN-AS1Q96MR7 158 aa11.27□□□□□ -0.6
USP39-218ENST00000493829 VPS25Q9BRG1 176 aa11.27□□□□□ -0.61
USP39-218ENST00000493829 TEN1Q86WV5 123 aa11.26□□□□□ -0.61
USP39-218ENST00000493829 TRBV7-4A0A0J9YYF1 115 aa11.25□□□□□ -0.61
USP39-218ENST00000493829 J3QL48 77 aa11.25□□□□□ -0.61
USP39-218ENST00000493829 TNXBP22105 4242 aa11.25□□□□□ -0.61
USP39-218ENST00000493829 CCKP06307 115 aa11.23□□□□□ -0.61
USP39-218ENST00000493829 C4orf48Q5BLP8 95 aa11.23□□□□□ -0.61
USP39-218ENST00000493829 A0A1W2PNM2 257 aa11.21□□□□□ -0.61
USP39-218ENST00000493829 Q6ZQT0 140 aa11.21□□□□□ -0.61
USP39-218ENST00000493829 LOC110117498A0A087WWA1 95 aa11.2□□□□□ -0.62
USP39-218ENST00000493829 TRBV7-7A0A0K0K1E9 115 aa11.16□□□□□ -0.62
USP39-218ENST00000493829 CD164Q04900 197 aa11.15□□□□□ -0.62
USP39-218ENST00000493829 SPAG11AQ6PDA7 123 aa11.15□□□□□ -0.62
USP39-218ENST00000493829 PDE6GP18545 87 aa11.14□□□□□ -0.63
USP39-218ENST00000493829 A0A087WSZ3 146 aa11.14□□□□□ -0.63
USP39-218ENST00000493829 SPINK1P00995 79 aa11.14□□□□□ -0.63
USP39-218ENST00000493829 Q6Q795 121 aa11.13□□□□□ -0.63
USP39-218ENST00000493829 LIMD2Q9BT23 127 aa11.08□□□□□ -0.64
USP39-218ENST00000493829 DMBT1Q9UGM3 2413 aaPredicted RBP11.07□□□□□ -0.64
USP39-218ENST00000493829 RETNLBQ9BQ08 111 aa11.07□□□□□ -0.64
USP39-218ENST00000493829 RPS29P62273 56 aaKnown RBP11.04□□□□□ -0.64
USP39-218ENST00000493829 SS18L2Q9UHA2 77 aa11.03□□□□□ -0.64
USP39-218ENST00000493829 C21orf62-AS1Q17RA5 79 aa11.02□□□□□ -0.64
USP39-218ENST00000493829 Q5XG85 94 aa10.99□□□□□ -0.65
USP39-218ENST00000493829 DEFB116Q30KQ4 102 aa10.97□□□□□ -0.65
USP39-218ENST00000493829 LINC00846Q9NV44 126 aa10.97□□□□□ -0.65
USP39-218ENST00000493829 A0A1B0GW54 56 aa10.96□□□□□ -0.65
USP39-218ENST00000493829 C1orf195Q5TG92 126 aa10.96□□□□□ -0.65
USP39-218ENST00000493829 NREPQ16612 68 aa10.94□□□□□ -0.66
USP39-218ENST00000493829 Q96NJ1 140 aa10.94□□□□□ -0.66
USP39-218ENST00000493829 ASB16-AS1Q495Z4 193 aa10.93□□□□□ -0.66
USP39-218ENST00000493829 Q6ZVQ6 151 aa10.92□□□□□ -0.66
USP39-218ENST00000493829 J3QR89 54 aa10.91□□□□□ -0.66
USP39-218ENST00000493829 PRR4Q16378 134 aa10.91□□□□□ -0.66
USP39-218ENST00000493829 SIGMAR1Q99720 223 aa10.9□□□□□ -0.66
USP39-218ENST00000493829 LINC00472Q9H8W2 130 aa10.9□□□□□ -0.66
USP39-218ENST00000493829 FAM240AA0A1B0GVK7 77 aa10.89□□□□□ -0.67
USP39-218ENST00000493829 UBL5Q9BZL1 73 aa10.89□□□□□ -0.67
USP39-218ENST00000493829 IGKV4-1P06312 121 aa10.89□□□□□ -0.67
USP39-218ENST00000493829 ACYP1P07311 99 aa10.88□□□□□ -0.67
USP39-218ENST00000493829 HERC1Q15751 4861 aa10.85□□□□□ -0.67
USP39-218ENST00000493829 K7ERU9 68 aa10.82□□□□□ -0.68
USP39-218ENST00000493829 IGLV7-46A0A075B6I9 117 aa10.82□□□□□ -0.68
USP39-218ENST00000493829 FP248Q71RG6 208 aaPredicted RBP10.82□□□□□ -0.68
USP39-218ENST00000493829 BPY2O14599 106 aa10.81□□□□□ -0.68
USP39-218ENST00000493829 J3KT08 172 aa10.79□□□□□ -0.68
USP39-218ENST00000493829 C9orf92A6NGG3 77 aa10.76□□□□□ -0.69
USP39-218ENST00000493829 DSCR10P59022 87 aa10.76□□□□□ -0.69
USP39-218ENST00000493829 Q8N9L7 120 aa10.76□□□□□ -0.69
USP39-218ENST00000493829 IGHV6-1A0A0B4J1U7 121 aa10.75□□□□□ -0.69
USP39-218ENST00000493829 IGKV3D-7A0A0C4DH55 119 aa10.74□□□□□ -0.69
USP39-218ENST00000493829 A8MWP4 228 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms