RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 Q1RN00 199 aa6.33□□□□□ -1.4
COL6A3-213ENST00000493475 PET117Q6UWS5 81 aa6.33□□□□□ -1.4
COL6A3-213ENST00000493475 S100A6P06703 90 aa6.32□□□□□ -1.4
COL6A3-213ENST00000493475 C20orf202A1L168 122 aa6.31□□□□□ -1.4
COL6A3-213ENST00000493475 TCL1BO95988 128 aa6.31□□□□□ -1.4
COL6A3-213ENST00000493475 Q5XG85 94 aa6.31□□□□□ -1.4
COL6A3-213ENST00000493475 LITAFQ99732 161 aa6.31□□□□□ -1.4
COL6A3-213ENST00000493475 A6NDN8 102 aa6.3□□□□□ -1.4
COL6A3-213ENST00000493475 F8WEM9 126 aa6.3□□□□□ -1.4
COL6A3-213ENST00000493475 IFITM1P13164 125 aa6.3□□□□□ -1.4
COL6A3-213ENST00000493475 LINC01545Q5VT33 79 aa6.3□□□□□ -1.4
COL6A3-213ENST00000493475 Q6ZVH6 145 aa6.3□□□□□ -1.4
COL6A3-213ENST00000493475 COX6B2Q6YFQ2 88 aa6.29□□□□□ -1.4
COL6A3-213ENST00000493475 M0R2T5 61 aa6.28□□□□□ -1.4
COL6A3-213ENST00000493475 SNRPEP62304 92 aaKnown RBP6.28□□□□□ -1.4
COL6A3-213ENST00000493475 TRAV13-2A0A0B4J235 113 aa6.27□□□□□ -1.41
COL6A3-213ENST00000493475 VAMP3Q15836 100 aa6.27□□□□□ -1.41
COL6A3-213ENST00000493475 HIST3H2BBQ8N257 126 aa6.27□□□□□ -1.41
COL6A3-213ENST00000493475 CRCT1Q9UGL9 99 aa6.27□□□□□ -1.41
COL6A3-213ENST00000493475 S100A2P29034 98 aa6.26□□□□□ -1.41
COL6A3-213ENST00000493475 IGLV5-48A0A075B6I7 105 aa6.25□□□□□ -1.41
COL6A3-213ENST00000493475 KRTDAPP60985 99 aa6.25□□□□□ -1.41
COL6A3-213ENST00000493475 C3orf79P0CE67 100 aa6.24□□□□□ -1.41
COL6A3-213ENST00000493475 RPL37P61927 97 aaKnown RBP6.24□□□□□ -1.41
COL6A3-213ENST00000493475 MT1HP80294 61 aa6.24□□□□□ -1.41
COL6A3-213ENST00000493475 C1orf195Q5TG92 126 aa6.24□□□□□ -1.41
COL6A3-213ENST00000493475 HIST1H2BLQ99880 126 aa6.24□□□□□ -1.41
COL6A3-213ENST00000493475 TMA7Q9Y2S6 64 aaKnown RBP6.24□□□□□ -1.41
COL6A3-213ENST00000493475 SMIM29Q86T20 159 aa6.23□□□□□ -1.41
COL6A3-213ENST00000493475 TTTY13Q9BZ97 58 aa6.22□□□□□ -1.41
COL6A3-213ENST00000493475 Q6JHZ5 121 aa6.21□□□□□ -1.42
COL6A3-213ENST00000493475 MUSTN1Q8IVN3 82 aa6.2□□□□□ -1.42
COL6A3-213ENST00000493475 ATP11AUNQ6ZP68 121 aa6.19□□□□□ -1.42
COL6A3-213ENST00000493475 KRTAP19-2Q3LHN2 52 aa6.18□□□□□ -1.42
COL6A3-213ENST00000493475 PCP2Q8IVA1 136 aa6.18□□□□□ -1.42
COL6A3-213ENST00000493475 SMIM11BQ8TCY0 68 aa6.18□□□□□ -1.42
COL6A3-213ENST00000493475 hADV29S1A0JD25 119 aa6.17□□□□□ -1.42
COL6A3-213ENST00000493475 HSBP1L1C9JCN9 74 aa6.17□□□□□ -1.42
COL6A3-213ENST00000493475 SNCGO76070 127 aa6.17□□□□□ -1.42
COL6A3-213ENST00000493475 CLEC2BQ92478 149 aa6.17□□□□□ -1.42
COL6A3-213ENST00000493475 SCGB1D1O95968 90 aa6.16□□□□□ -1.42
COL6A3-213ENST00000493475 KRTAP10-6P60371 365 aaPredicted RBP6.16□□□□□ -1.42
COL6A3-213ENST00000493475 ANKRD39Q53RE8 183 aa6.16□□□□□ -1.42
COL6A3-213ENST00000493475 PPDPFLQ8WWR9 84 aa6.15□□□□□ -1.42
COL6A3-213ENST00000493475 TRBV7-7A0A0K0K1E9 115 aa6.14□□□□□ -1.43
COL6A3-213ENST00000493475 LINC00575Q6W349 94 aa6.14□□□□□ -1.43
COL6A3-213ENST00000493475 Q6ZQY7 126 aa6.14□□□□□ -1.43
COL6A3-213ENST00000493475 ATOH7Q8N100 152 aa6.14□□□□□ -1.43
COL6A3-213ENST00000493475 SNHG12Q9BXW3 62 aa6.14□□□□□ -1.43
COL6A3-213ENST00000493475 A0A0G2JQZ4 141 aa6.13□□□□□ -1.43
COL6A3-213ENST00000493475 BVES-AS1Q5T3Y7 98 aa6.13□□□□□ -1.43
COL6A3-213ENST00000493475 SS18L2Q9UHA2 77 aa6.13□□□□□ -1.43
COL6A3-213ENST00000493475 LOC105371267A0A1B0GV96 52 aa6.12□□□□□ -1.43
COL6A3-213ENST00000493475 LST1O00453 97 aa6.12□□□□□ -1.43
COL6A3-213ENST00000493475 OCIAD2Q56VL3 154 aa6.12□□□□□ -1.43
COL6A3-213ENST00000493475 Q6Q795 121 aa6.12□□□□□ -1.43
COL6A3-213ENST00000493475 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.12□□□□□ -1.43
COL6A3-213ENST00000493475 Q75L30 129 aa6.11□□□□□ -1.43
COL6A3-213ENST00000493475 OBSCN-AS1Q96MR7 158 aa6.11□□□□□ -1.43
COL6A3-213ENST00000493475 C12orf57Q99622 126 aa6.11□□□□□ -1.43
COL6A3-213ENST00000493475 IGFL1Q6UW32 110 aa6.1□□□□□ -1.43
COL6A3-213ENST00000493475 TRBV20-1A0A075B6N2 111 aa6.09□□□□□ -1.43
COL6A3-213ENST00000493475 PYY3Q5JQD4 70 aa6.07□□□□□ -1.44
COL6A3-213ENST00000493475 Q96NJ1 140 aa6.07□□□□□ -1.44
COL6A3-213ENST00000493475 HIST1H4GQ99525 98 aa6.06□□□□□ -1.44
COL6A3-213ENST00000493475 CFC1P0CG37 223 aa6.05□□□□□ -1.44
COL6A3-213ENST00000493475 VAMP8Q9BV40 100 aa6.04□□□□□ -1.44
COL6A3-213ENST00000493475 PAM16Q9Y3D7 125 aa6.04□□□□□ -1.44
COL6A3-213ENST00000493475 SPATA45Q537H7 98 aa6.03□□□□□ -1.44
COL6A3-213ENST00000493475 TEN1Q86WV5 123 aa6.03□□□□□ -1.44
COL6A3-213ENST00000493475 KRTAP3-1Q9BYR8 98 aa6.03□□□□□ -1.44
COL6A3-213ENST00000493475 H0YGX0 51 aa6.02□□□□□ -1.45
COL6A3-213ENST00000493475 RAB37Q96AX2 223 aa6.02□□□□□ -1.45
COL6A3-213ENST00000493475 H3BUT2 72 aa6.01□□□□□ -1.45
COL6A3-213ENST00000493475 COX8AP10176 69 aa6.01□□□□□ -1.45
COL6A3-213ENST00000493475 C14orf144Q96I85 54 aa6□□□□□ -1.45
COL6A3-213ENST00000493475 DLEU1O43261 78 aa5.99□□□□□ -1.45
COL6A3-213ENST00000493475 C20orf166-AS1Q96NR2 134 aa5.99□□□□□ -1.45
COL6A3-213ENST00000493475 SMIM6P0DI80 62 aa5.98□□□□□ -1.45
COL6A3-213ENST00000493475 NDUFV3P56181 108 aaKnown RBP5.98□□□□□ -1.45
COL6A3-213ENST00000493475 A0A087WSZ3 146 aa5.97□□□□□ -1.45
COL6A3-213ENST00000493475 FAM236DA0A1B0GTK5 79 aa5.97□□□□□ -1.45
COL6A3-213ENST00000493475 FAM236CP0DP71 79 aa5.97□□□□□ -1.45
COL6A3-213ENST00000493475 FLGP20930 4061 aaPredicted RBP5.97□□□□□ -1.45
COL6A3-213ENST00000493475 A8MUU9 505 aa5.96□□□□□ -1.46
COL6A3-213ENST00000493475 H3BMG7 143 aa5.96□□□□□ -1.46
COL6A3-213ENST00000493475 SIGMAR1Q99720 223 aa5.96□□□□□ -1.46
COL6A3-213ENST00000493475 A0A1B0GX51 115 aa5.95□□□□□ -1.46
COL6A3-213ENST00000493475 H3BQ85 93 aa5.95□□□□□ -1.46
COL6A3-213ENST00000493475 FABP2P12104 132 aa5.95□□□□□ -1.46
COL6A3-213ENST00000493475 A0A0B4J2C4 111 aa5.94□□□□□ -1.46
COL6A3-213ENST00000493475 RBM12B-AS1Q9P1G2 102 aa5.94□□□□□ -1.46
COL6A3-213ENST00000493475 HIGD1BQ9P298 99 aa5.94□□□□□ -1.46
COL6A3-213ENST00000493475 DNAL4O96015 105 aa5.93□□□□□ -1.46
COL6A3-213ENST00000493475 LINC00313P59037 77 aa5.93□□□□□ -1.46
COL6A3-213ENST00000493475 UQCR10Q9UDW1 63 aa5.93□□□□□ -1.46
COL6A3-213ENST00000493475 C2orf91Q6ZV80 131 aa5.92□□□□□ -1.46
COL6A3-213ENST00000493475 DSCR10P59022 87 aa5.91□□□□□ -1.46
COL6A3-213ENST00000493475 MTURNQ8N3F0 131 aa5.9□□□□□ -1.46
COL6A3-213ENST00000493475 ANKRD29Q8N6D5 301 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms