RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 MUSTN1Q8IVN3 82 aa6.53□□□□□ -1.36
CPSF3-204ENST00000489403 TCL1BO95988 128 aa6.52□□□□□ -1.37
CPSF3-204ENST00000489403 NHP2Q9NX24 153 aaKnown RBP6.52□□□□□ -1.37
CPSF3-204ENST00000489403 KRTDAPP60985 99 aa6.51□□□□□ -1.37
CPSF3-204ENST00000489403 Q6ZVH6 145 aa6.51□□□□□ -1.37
CPSF3-204ENST00000489403 SMIM11BQ8TCY0 68 aa6.51□□□□□ -1.37
CPSF3-204ENST00000489403 TRAV13-2A0A0B4J235 113 aa6.49□□□□□ -1.37
CPSF3-204ENST00000489403 PCP2Q8IVA1 136 aa6.49□□□□□ -1.37
CPSF3-204ENST00000489403 F8WEM9 126 aa6.48□□□□□ -1.37
CPSF3-204ENST00000489403 ATOH7Q8N100 152 aa6.48□□□□□ -1.37
CPSF3-204ENST00000489403 C20orf202A1L168 122 aa6.47□□□□□ -1.37
CPSF3-204ENST00000489403 COA6Q5JTJ3 125 aaKnown RBP6.46□□□□□ -1.38
CPSF3-204ENST00000489403 TRBV7-7A0A0K0K1E9 115 aa6.45□□□□□ -1.38
CPSF3-204ENST00000489403 IGFL1Q6UW32 110 aa6.45□□□□□ -1.38
CPSF3-204ENST00000489403 LINC00575Q6W349 94 aa6.45□□□□□ -1.38
CPSF3-204ENST00000489403 Q6ZQY7 126 aa6.45□□□□□ -1.38
CPSF3-204ENST00000489403 CLEC2BQ92478 149 aa6.45□□□□□ -1.38
CPSF3-204ENST00000489403 S100A1P23297 94 aa6.44□□□□□ -1.38
CPSF3-204ENST00000489403 Q6JHZ5 121 aa6.44□□□□□ -1.38
CPSF3-204ENST00000489403 Q6Q795 121 aa6.44□□□□□ -1.38
CPSF3-204ENST00000489403 Q75L30 129 aa6.44□□□□□ -1.38
CPSF3-204ENST00000489403 OBSCN-AS1Q96MR7 158 aa6.44□□□□□ -1.38
CPSF3-204ENST00000489403 KRTAP4-8Q9BYQ9 185 aa6.44□□□□□ -1.38
CPSF3-204ENST00000489403 hADV29S1A0JD25 119 aa6.43□□□□□ -1.38
CPSF3-204ENST00000489403 VAMP3Q15836 100 aa6.43□□□□□ -1.38
CPSF3-204ENST00000489403 ATP11AUNQ6ZP68 121 aa6.43□□□□□ -1.38
CPSF3-204ENST00000489403 OCIAD2Q56VL3 154 aa6.4□□□□□ -1.38
CPSF3-204ENST00000489403 C21orf62-AS1Q17RA5 79 aa6.39□□□□□ -1.39
CPSF3-204ENST00000489403 SNRPEP62304 92 aaKnown RBP6.38□□□□□ -1.39
CPSF3-204ENST00000489403 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.38□□□□□ -1.39
CPSF3-204ENST00000489403 LST1O00453 97 aa6.37□□□□□ -1.39
CPSF3-204ENST00000489403 USH2AO75445 5202 aa6.37□□□□□ -1.39
CPSF3-204ENST00000489403 PPDPFLQ8WWR9 84 aa6.36□□□□□ -1.39
CPSF3-204ENST00000489403 Q96NJ1 140 aa6.36□□□□□ -1.39
CPSF3-204ENST00000489403 KRTAP9-8Q9BYQ0 159 aa6.36□□□□□ -1.39
CPSF3-204ENST00000489403 H3BUT2 72 aa6.35□□□□□ -1.39
CPSF3-204ENST00000489403 SSPOA2VEC9 5147 aa6.35□□□□□ -1.39
CPSF3-204ENST00000489403 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.34□□□□□ -1.39
CPSF3-204ENST00000489403 C20orf166-AS1Q96NR2 134 aa6.34□□□□□ -1.39
CPSF3-204ENST00000489403 SNHG12Q9BXW3 62 aa6.34□□□□□ -1.39
CPSF3-204ENST00000489403 CFC1P0CG37 223 aa6.33□□□□□ -1.4
CPSF3-204ENST00000489403 BVES-AS1Q5T3Y7 98 aa6.33□□□□□ -1.4
CPSF3-204ENST00000489403 C12orf57Q99622 126 aa6.33□□□□□ -1.4
CPSF3-204ENST00000489403 KRTAP9-7A8MTY7 169 aa6.32□□□□□ -1.4
CPSF3-204ENST00000489403 A8MUU9 505 aa6.32□□□□□ -1.4
CPSF3-204ENST00000489403 SCGB1D1O95968 90 aa6.32□□□□□ -1.4
CPSF3-204ENST00000489403 SS18L2Q9UHA2 77 aa6.31□□□□□ -1.4
CPSF3-204ENST00000489403 HSBP1L1C9JCN9 74 aa6.3□□□□□ -1.4
CPSF3-204ENST00000489403 HIST3H2BBQ8N257 126 aa6.29□□□□□ -1.4
CPSF3-204ENST00000489403 HIST1H2BLQ99880 126 aa6.29□□□□□ -1.4
CPSF3-204ENST00000489403 TRBV20-1A0A075B6N2 111 aa6.28□□□□□ -1.4
CPSF3-204ENST00000489403 TEN1Q86WV5 123 aa6.28□□□□□ -1.4
CPSF3-204ENST00000489403 HIST1H4GQ99525 98 aa6.28□□□□□ -1.4
CPSF3-204ENST00000489403 A0A087WSZ3 146 aa6.27□□□□□ -1.41
CPSF3-204ENST00000489403 DSCR10P59022 87 aa6.26□□□□□ -1.41
CPSF3-204ENST00000489403 S100A2P29034 98 aa6.25□□□□□ -1.41
CPSF3-204ENST00000489403 NDUFV3P56181 108 aaKnown RBP6.25□□□□□ -1.41
CPSF3-204ENST00000489403 FAM218AQ96MZ4 157 aa6.25□□□□□ -1.41
CPSF3-204ENST00000489403 MT2AP02795 61 aa6.24□□□□□ -1.41
CPSF3-204ENST00000489403 FCGBPQ9Y6R7 5405 aaPredicted RBP6.24□□□□□ -1.41
CPSF3-204ENST00000489403 KRTAP16-1A8MUX0 517 aa6.23□□□□□ -1.41
CPSF3-204ENST00000489403 COX8AP10176 69 aa6.22□□□□□ -1.41
CPSF3-204ENST00000489403 H0YGX0 51 aa6.21□□□□□ -1.42
CPSF3-204ENST00000489403 H3BMG7 143 aa6.21□□□□□ -1.42
CPSF3-204ENST00000489403 RAB37Q96AX2 223 aa6.21□□□□□ -1.42
CPSF3-204ENST00000489403 SIGMAR1Q99720 223 aa6.21□□□□□ -1.42
CPSF3-204ENST00000489403 A0A0B4J2C4 111 aa6.2□□□□□ -1.42
CPSF3-204ENST00000489403 FAM236DA0A1B0GTK5 79 aa6.2□□□□□ -1.42
CPSF3-204ENST00000489403 SNCGO76070 127 aa6.2□□□□□ -1.42
CPSF3-204ENST00000489403 MT1FP04733 61 aa6.2□□□□□ -1.42
CPSF3-204ENST00000489403 FAM236CP0DP71 79 aa6.2□□□□□ -1.42
CPSF3-204ENST00000489403 A0A1W2PNM2 257 aa6.19□□□□□ -1.42
CPSF3-204ENST00000489403 DLEU1O43261 78 aa6.19□□□□□ -1.42
CPSF3-204ENST00000489403 S100A6P06703 90 aa6.19□□□□□ -1.42
CPSF3-204ENST00000489403 LCE3BQ5TA77 95 aa6.19□□□□□ -1.42
CPSF3-204ENST00000489403 FABP2P12104 132 aa6.18□□□□□ -1.42
CPSF3-204ENST00000489403 LINC00313P59037 77 aa6.18□□□□□ -1.42
CPSF3-204ENST00000489403 MPLKIPQ8TAP9 179 aa6.18□□□□□ -1.42
CPSF3-204ENST00000489403 A0A1B0GX51 115 aa6.17□□□□□ -1.42
CPSF3-204ENST00000489403 HRES1P13985 223 aa6.17□□□□□ -1.42
CPSF3-204ENST00000489403 KRTAP19-1Q8IUB9 90 aa6.17□□□□□ -1.42
CPSF3-204ENST00000489403 IGKV4-1P06312 121 aa6.16□□□□□ -1.42
CPSF3-204ENST00000489403 KRTAP9-3Q9BYQ3 159 aa6.16□□□□□ -1.42
CPSF3-204ENST00000489403 RBM12B-AS1Q9P1G2 102 aa6.16□□□□□ -1.42
CPSF3-204ENST00000489403 NOTCH2NLQ7Z3S9 236 aa6.15□□□□□ -1.42
CPSF3-204ENST00000489403 C14orf144Q96I85 54 aa6.15□□□□□ -1.42
CPSF3-204ENST00000489403 KRTAP4-12Q9BQ66 201 aa6.14□□□□□ -1.43
CPSF3-204ENST00000489403 HIGD1BQ9P298 99 aa6.14□□□□□ -1.43
CPSF3-204ENST00000489403 TRBV7-4A0A0J9YYF1 115 aa6.13□□□□□ -1.43
CPSF3-204ENST00000489403 KRTAP10-10P60014 251 aa6.13□□□□□ -1.43
CPSF3-204ENST00000489403 C2orf91Q6ZV80 131 aa6.13□□□□□ -1.43
CPSF3-204ENST00000489403 TRIAP1O43715 76 aa6.12□□□□□ -1.43
CPSF3-204ENST00000489403 DEFB116Q30KQ4 102 aa6.12□□□□□ -1.43
CPSF3-204ENST00000489403 A0A1B0GV72 72 aa6.11□□□□□ -1.43
CPSF3-204ENST00000489403 CEND1Q8N111 149 aa6.11□□□□□ -1.43
CPSF3-204ENST00000489403 ANKRD29Q8N6D5 301 aa6.11□□□□□ -1.43
CPSF3-204ENST00000489403 PRO1854Q9UHT4 67 aa6.11□□□□□ -1.43
CPSF3-204ENST00000489403 PAM16Q9Y3D7 125 aa6.11□□□□□ -1.43
CPSF3-204ENST00000489403 SPATA45Q537H7 98 aa6.1□□□□□ -1.43
CPSF3-204ENST00000489403 LINC00472Q9H8W2 130 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms