RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 F8WEM9 126 aa7.64□□□□□ -1.19
MCF2L-228ENST00000487354 KRTAP10-10P60014 251 aa7.64□□□□□ -1.19
MCF2L-228ENST00000487354 Q6JHZ5 121 aa7.64□□□□□ -1.19
MCF2L-228ENST00000487354 NHP2Q9NX24 153 aaKnown RBP7.64□□□□□ -1.19
MCF2L-228ENST00000487354 TRBV20-1A0A075B6N2 111 aa7.62□□□□□ -1.19
MCF2L-228ENST00000487354 MPLKIPQ8TAP9 179 aa7.62□□□□□ -1.19
MCF2L-228ENST00000487354 LINC00575Q6W349 94 aa7.6□□□□□ -1.19
MCF2L-228ENST00000487354 Q6ZQY7 126 aa7.6□□□□□ -1.19
MCF2L-228ENST00000487354 IFITM1P13164 125 aa7.59□□□□□ -1.19
MCF2L-228ENST00000487354 OCIAD2Q56VL3 154 aa7.59□□□□□ -1.19
MCF2L-228ENST00000487354 MUSTN1Q8IVN3 82 aa7.59□□□□□ -1.19
MCF2L-228ENST00000487354 LST1O00453 97 aa7.58□□□□□ -1.2
MCF2L-228ENST00000487354 TRAV13-2A0A0B4J235 113 aa7.57□□□□□ -1.2
MCF2L-228ENST00000487354 HRES1P13985 223 aa7.57□□□□□ -1.2
MCF2L-228ENST00000487354 SCGB1D4Q6XE38 83 aa7.57□□□□□ -1.2
MCF2L-228ENST00000487354 KRTAP6-3Q3LI67 103 aa7.56□□□□□ -1.2
MCF2L-228ENST00000487354 PET117Q6UWS5 81 aa7.56□□□□□ -1.2
MCF2L-228ENST00000487354 ANKRD39Q53RE8 183 aa7.55□□□□□ -1.2
MCF2L-228ENST00000487354 SLC7A5P1Q8MH63 180 aa7.55□□□□□ -1.2
MCF2L-228ENST00000487354 COLCA2A8K830 154 aa7.54□□□□□ -1.2
MCF2L-228ENST00000487354 Q6ZVH6 145 aa7.54□□□□□ -1.2
MCF2L-228ENST00000487354 COPS9Q8WXC6 57 aa7.54□□□□□ -1.2
MCF2L-228ENST00000487354 FAM236DA0A1B0GTK5 79 aa7.53□□□□□ -1.2
MCF2L-228ENST00000487354 hADV29S1A0JD25 119 aa7.53□□□□□ -1.2
MCF2L-228ENST00000487354 H3BUT2 72 aa7.53□□□□□ -1.2
MCF2L-228ENST00000487354 FAM236CP0DP71 79 aa7.53□□□□□ -1.2
MCF2L-228ENST00000487354 C3orf79P0CE67 100 aa7.52□□□□□ -1.21
MCF2L-228ENST00000487354 DSCR10P59022 87 aa7.52□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BKO60814 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BJP06899 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BOP23527 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BBP33778 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BDP58876 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BCP62807 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST2H2BEQ16778 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BHQ93079 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BNQ99877 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 HIST1H2BMQ99879 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 LINC00846Q9NV44 126 aa7.49□□□□□ -1.21
MCF2L-228ENST00000487354 VAMP3Q15836 100 aa7.48□□□□□ -1.21
MCF2L-228ENST00000487354 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.48□□□□□ -1.21
MCF2L-228ENST00000487354 NOTCH2NLQ7Z3S9 236 aa7.47□□□□□ -1.21
MCF2L-228ENST00000487354 SS18L2Q9UHA2 77 aa7.47□□□□□ -1.21
MCF2L-228ENST00000487354 PPDPFLQ8WWR9 84 aa7.46□□□□□ -1.22
MCF2L-228ENST00000487354 RBM12B-AS1Q9P1G2 102 aa7.45□□□□□ -1.22
MCF2L-228ENST00000487354 ATOH7Q8N100 152 aa7.44□□□□□ -1.22
MCF2L-228ENST00000487354 NEBP20929 6669 aa7.44□□□□□ -1.22
MCF2L-228ENST00000487354 A0A087WSZ3 146 aa7.43□□□□□ -1.22
MCF2L-228ENST00000487354 KRTDAPP60985 99 aa7.42□□□□□ -1.22
MCF2L-228ENST00000487354 TEN1Q86WV5 123 aa7.42□□□□□ -1.22
MCF2L-228ENST00000487354 SNHG12Q9BXW3 62 aa7.42□□□□□ -1.22
MCF2L-228ENST00000487354 SCGB1D1O95968 90 aa7.41□□□□□ -1.22
MCF2L-228ENST00000487354 LINC00313P59037 77 aa7.37□□□□□ -1.23
MCF2L-228ENST00000487354 SIGMAR1Q99720 223 aa7.37□□□□□ -1.23
MCF2L-228ENST00000487354 MUC12Q9UKN1 5478 aa7.35□□□□□ -1.23
MCF2L-228ENST00000487354 COA6Q5JTJ3 125 aaKnown RBP7.35□□□□□ -1.23
MCF2L-228ENST00000487354 A0A1W2PNM2 257 aa7.34□□□□□ -1.23
MCF2L-228ENST00000487354 BVES-AS1Q5T3Y7 98 aa7.34□□□□□ -1.23
MCF2L-228ENST00000487354 NDUFV3P56181 108 aaKnown RBP7.33□□□□□ -1.24
MCF2L-228ENST00000487354 C12orf57Q99622 126 aa7.33□□□□□ -1.24
MCF2L-228ENST00000487354 Q8N9P0 234 aaPredicted RBP7.32□□□□□ -1.24
MCF2L-228ENST00000487354 FAM218AQ96MZ4 157 aa7.32□□□□□ -1.24
MCF2L-228ENST00000487354 A8MWP4 228 aa7.29□□□□□ -1.24
MCF2L-228ENST00000487354 IGKV4-1P06312 121 aa7.29□□□□□ -1.24
MCF2L-228ENST00000487354 H3BMG7 143 aa7.27□□□□□ -1.25
MCF2L-228ENST00000487354 SNRPEP62304 92 aaKnown RBP7.25□□□□□ -1.25
MCF2L-228ENST00000487354 MTURNQ8N3F0 131 aa7.25□□□□□ -1.25
MCF2L-228ENST00000487354 LINC00472Q9H8W2 130 aa7.25□□□□□ -1.25
MCF2L-228ENST00000487354 DEFB116Q30KQ4 102 aa7.24□□□□□ -1.25
MCF2L-228ENST00000487354 SPINK7P58062 85 aa7.23□□□□□ -1.25
MCF2L-228ENST00000487354 IGHV6-1A0A0B4J1U7 121 aa7.22□□□□□ -1.25
MCF2L-228ENST00000487354 KRTAP20-1Q3LI63 56 aa7.21□□□□□ -1.26
MCF2L-228ENST00000487354 ZCCHC13Q8WW36 166 aaKnown RBP7.21□□□□□ -1.26
MCF2L-228ENST00000487354 TRBV7-4A0A0J9YYF1 115 aa7.2□□□□□ -1.26
MCF2L-228ENST00000487354 H0YGX0 51 aa7.18□□□□□ -1.26
MCF2L-228ENST00000487354 FABP2P12104 132 aa7.17□□□□□ -1.26
MCF2L-228ENST00000487354 HIST1H4GQ99525 98 aa7.17□□□□□ -1.26
MCF2L-228ENST00000487354 WFDC13Q8IUB5 93 aa7.16□□□□□ -1.26
MCF2L-228ENST00000487354 A0A1B0GVX0 72 aa7.15□□□□□ -1.26
MCF2L-228ENST00000487354 RAB37Q96AX2 223 aa7.15□□□□□ -1.26
MCF2L-228ENST00000487354 C8orf87E5RJ46 101 aa7.14□□□□□ -1.27
MCF2L-228ENST00000487354 A0A1B0GV72 72 aa7.13□□□□□ -1.27
MCF2L-228ENST00000487354 A0A1B0GX51 115 aa7.13□□□□□ -1.27
MCF2L-228ENST00000487354 ANKRD29Q8N6D5 301 aa7.13□□□□□ -1.27
MCF2L-228ENST00000487354 A0A0B4J2C4 111 aa7.12□□□□□ -1.27
MCF2L-228ENST00000487354 SNCGO76070 127 aa7.12□□□□□ -1.27
MCF2L-228ENST00000487354 HSBP1L1C9JCN9 74 aa7.11□□□□□ -1.27
MCF2L-228ENST00000487354 HIST1H2BLQ99880 126 aa7.1□□□□□ -1.27
MCF2L-228ENST00000487354 HIST3H2BBQ8N257 126 aa7.09□□□□□ -1.27
MCF2L-228ENST00000487354 CCKP06307 115 aa7.08□□□□□ -1.28
MCF2L-228ENST00000487354 COX8AP10176 69 aa7.08□□□□□ -1.28
MCF2L-228ENST00000487354 GHRHP01286 108 aa7.07□□□□□ -1.28
MCF2L-228ENST00000487354 TRACP01848 142 aa7.06□□□□□ -1.28
MCF2L-228ENST00000487354 MT1BP07438 61 aa7.06□□□□□ -1.28
MCF2L-228ENST00000487354 KRTAP5-9P26371 169 aa7.06□□□□□ -1.28
MCF2L-228ENST00000487354 KMT2DO14686 5537 aa7.06□□□□□ -1.28
MCF2L-228ENST00000487354 MDN1Q9NU22 5596 aa7.06□□□□□ -1.28
MCF2L-228ENST00000487354 DLEU1O43261 78 aa7.05□□□□□ -1.28
MCF2L-228ENST00000487354 TRIAP1O43715 76 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms