RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 KRTAP29-1A8MX34 341 aaPredicted RBP7.24□□□□□ -1.25
SDC1-206ENST00000482879 PPDPFLQ8WWR9 84 aa7.24□□□□□ -1.25
SDC1-206ENST00000482879 LRP1Q07954 4544 aaKnown RBP7.23□□□□□ -1.25
SDC1-206ENST00000482879 IGLV9-49A0A0B4J1Y8 123 aa7.23□□□□□ -1.25
SDC1-206ENST00000482879 KRTAP13-2Q52LG2 175 aa7.23□□□□□ -1.25
SDC1-206ENST00000482879 SMIM29Q86T20 159 aa7.23□□□□□ -1.25
SDC1-206ENST00000482879 C3orf22Q8N5N4 141 aa7.23□□□□□ -1.25
SDC1-206ENST00000482879 SPCS1Q9Y6A9 102 aa7.23□□□□□ -1.25
SDC1-206ENST00000482879 H3BQ85 93 aa7.22□□□□□ -1.25
SDC1-206ENST00000482879 KRTAP10-8P60410 259 aa7.22□□□□□ -1.25
SDC1-206ENST00000482879 TYMSOSQ8TAI1 123 aa7.22□□□□□ -1.25
SDC1-206ENST00000482879 FAT3Q8TDW7 4589 aa7.21□□□□□ -1.25
SDC1-206ENST00000482879 BAALC-AS2P0C853 105 aa7.21□□□□□ -1.26
SDC1-206ENST00000482879 C9orf153Q5TBE3 101 aa7.21□□□□□ -1.26
SDC1-206ENST00000482879 F8WEM9 126 aa7.2□□□□□ -1.26
SDC1-206ENST00000482879 H3BMG7 143 aa7.2□□□□□ -1.26
SDC1-206ENST00000482879 TMEM256-PLSCR3K7ERE1 68 aa7.2□□□□□ -1.26
SDC1-206ENST00000482879 MOBPQ13875 183 aa7.2□□□□□ -1.26
SDC1-206ENST00000482879 MYCBP2O75592 4640 aa7.2□□□□□ -1.26
SDC1-206ENST00000482879 C9JAW5 83 aa7.19□□□□□ -1.26
SDC1-206ENST00000482879 J3QL48 77 aa7.19□□□□□ -1.26
SDC1-206ENST00000482879 MT1HL1P0DM35 61 aa7.19□□□□□ -1.26
SDC1-206ENST00000482879 DMBT1Q9UGM3 2413 aaPredicted RBP7.19□□□□□ -1.26
SDC1-206ENST00000482879 K7EP34 96 aa7.18□□□□□ -1.26
SDC1-206ENST00000482879 NDUFV3P56181 108 aaKnown RBP7.18□□□□□ -1.26
SDC1-206ENST00000482879 SSBP3-AS1Q7Z2R9 100 aa7.18□□□□□ -1.26
SDC1-206ENST00000482879 Q8NBF4 154 aa7.18□□□□□ -1.26
SDC1-206ENST00000482879 UBE2V1Q13404 147 aa7.17□□□□□ -1.26
SDC1-206ENST00000482879 GTF2H5Q6ZYL4 71 aa7.16□□□□□ -1.26
SDC1-206ENST00000482879 MTURNQ8N3F0 131 aa7.15□□□□□ -1.26
SDC1-206ENST00000482879 IGLV8-61A0A075B6I0 122 aa7.14□□□□□ -1.27
SDC1-206ENST00000482879 ANKRD29Q8N6D5 301 aa7.14□□□□□ -1.27
SDC1-206ENST00000482879 TNXBP22105 4242 aa7.13□□□□□ -1.27
SDC1-206ENST00000482879 A0A1B0GV72 72 aa7.13□□□□□ -1.27
SDC1-206ENST00000482879 C4orf48Q5BLP8 95 aa7.13□□□□□ -1.27
SDC1-206ENST00000482879 LINC00304Q8N9R0 145 aa7.13□□□□□ -1.27
SDC1-206ENST00000482879 A0A0G2JQZ4 141 aa7.12□□□□□ -1.27
SDC1-206ENST00000482879 H3BT86 120 aa7.12□□□□□ -1.27
SDC1-206ENST00000482879 Q6JHZ5 121 aa7.12□□□□□ -1.27
SDC1-206ENST00000482879 IGFL1Q6UW32 110 aa7.11□□□□□ -1.27
SDC1-206ENST00000482879 PCLOQ9Y6V0 5065 aa7.1□□□□□ -1.27
SDC1-206ENST00000482879 A0A1B0GV90 55 aa7.1□□□□□ -1.27
SDC1-206ENST00000482879 SPAG11AQ6PDA7 123 aa7.1□□□□□ -1.27
SDC1-206ENST00000482879 RBM3P98179 157 aaKnown RBP7.09□□□□□ -1.27
SDC1-206ENST00000482879 HRCT1Q6UXD1 115 aa7.09□□□□□ -1.27
SDC1-206ENST00000482879 PRO0461Q9UI25 63 aa7.09□□□□□ -1.27
SDC1-206ENST00000482879 JMJD7-PLA2G4BH0Y9G9 81 aa7.08□□□□□ -1.28
SDC1-206ENST00000482879 SMCPP49901 116 aaPredicted RBP7.08□□□□□ -1.28
SDC1-206ENST00000482879 SPINK1P00995 79 aa7.06□□□□□ -1.28
SDC1-206ENST00000482879 CD164Q04900 197 aa7.06□□□□□ -1.28
SDC1-206ENST00000482879 DSCR8Q96T75 97 aa7.06□□□□□ -1.28
SDC1-206ENST00000482879 F8W1H4 67 aa7.05□□□□□ -1.28
SDC1-206ENST00000482879 TRBV7-4A0A0J9YYF1 115 aa7.04□□□□□ -1.28
SDC1-206ENST00000482879 OBSCN-AS1Q96MR7 158 aa7.04□□□□□ -1.28
SDC1-206ENST00000482879 TEN1Q86WV5 123 aa7.03□□□□□ -1.28
SDC1-206ENST00000482879 C14orf132Q9NPU4 83 aa7.03□□□□□ -1.28
SDC1-206ENST00000482879 A0A1W2PNM2 257 aa7.02□□□□□ -1.29
SDC1-206ENST00000482879 CCKP06307 115 aa7.02□□□□□ -1.29
SDC1-206ENST00000482879 LOC110117498A0A087WWA1 95 aa7.01□□□□□ -1.29
SDC1-206ENST00000482879 TRBV7-7A0A0K0K1E9 115 aa7.01□□□□□ -1.29
SDC1-206ENST00000482879 PDE6GP18545 87 aa7.01□□□□□ -1.29
SDC1-206ENST00000482879 RPS29P62273 56 aaKnown RBP7.01□□□□□ -1.29
SDC1-206ENST00000482879 Q6Q795 121 aa7.01□□□□□ -1.29
SDC1-206ENST00000482879 VPS25Q9BRG1 176 aa7.01□□□□□ -1.29
SDC1-206ENST00000482879 Q6ZQT0 140 aa7□□□□□ -1.29
SDC1-206ENST00000482879 LIMD2Q9BT23 127 aa7□□□□□ -1.29
SDC1-206ENST00000482879 ETDBQ3ZM63 59 aa6.98□□□□□ -1.29
SDC1-206ENST00000482879 A0A087WSZ3 146 aa6.97□□□□□ -1.29
SDC1-206ENST00000482879 Q5XG85 94 aa6.97□□□□□ -1.29
SDC1-206ENST00000482879 RETNLBQ9BQ08 111 aa6.96□□□□□ -1.3
SDC1-206ENST00000482879 C21orf62-AS1Q17RA5 79 aa6.95□□□□□ -1.3
SDC1-206ENST00000482879 SS18L2Q9UHA2 77 aa6.94□□□□□ -1.3
SDC1-206ENST00000482879 A0A1B0GW54 56 aa6.92□□□□□ -1.3
SDC1-206ENST00000482879 PRR4Q16378 134 aa6.92□□□□□ -1.3
SDC1-206ENST00000482879 ASB16-AS1Q495Z4 193 aa6.92□□□□□ -1.3
SDC1-206ENST00000482879 C1orf195Q5TG92 126 aa6.92□□□□□ -1.3
SDC1-206ENST00000482879 FP248Q71RG6 208 aaPredicted RBP6.89□□□□□ -1.31
SDC1-206ENST00000482879 HERC1Q15751 4861 aa6.88□□□□□ -1.31
SDC1-206ENST00000482879 IGLV7-46A0A075B6I9 117 aa6.87□□□□□ -1.31
SDC1-206ENST00000482879 Q96NJ1 140 aa6.86□□□□□ -1.31
SDC1-206ENST00000482879 NREPQ16612 68 aa6.85□□□□□ -1.31
SDC1-206ENST00000482879 LINC00472Q9H8W2 130 aa6.85□□□□□ -1.31
SDC1-206ENST00000482879 DEFB116Q30KQ4 102 aa6.84□□□□□ -1.31
SDC1-206ENST00000482879 IGKV4-1P06312 121 aa6.83□□□□□ -1.32
SDC1-206ENST00000482879 LINC00846Q9NV44 126 aa6.82□□□□□ -1.32
SDC1-206ENST00000482879 SIGMAR1Q99720 223 aa6.81□□□□□ -1.32
SDC1-206ENST00000482879 Q6ZVQ6 151 aa6.8□□□□□ -1.32
SDC1-206ENST00000482879 J3KT08 172 aa6.79□□□□□ -1.32
SDC1-206ENST00000482879 ACYP1P07311 99 aa6.79□□□□□ -1.32
SDC1-206ENST00000482879 UBL5Q9BZL1 73 aa6.79□□□□□ -1.32
SDC1-206ENST00000482879 FAM240AA0A1B0GVK7 77 aa6.77□□□□□ -1.33
SDC1-206ENST00000482879 J3QR89 54 aa6.77□□□□□ -1.33
SDC1-206ENST00000482879 TPRXLQ17RH7 258 aa6.77□□□□□ -1.33
SDC1-206ENST00000482879 KRTAP13-3Q3SY46 172 aa6.77□□□□□ -1.33
SDC1-206ENST00000482879 C9orf92A6NGG3 77 aa6.76□□□□□ -1.33
SDC1-206ENST00000482879 BPY2O14599 106 aa6.75□□□□□ -1.33
SDC1-206ENST00000482879 NDUFB1O75438 58 aa6.74□□□□□ -1.33
SDC1-206ENST00000482879 CDIP1Q9H305 208 aa6.74□□□□□ -1.33
SDC1-206ENST00000482879 IGHV6-1A0A0B4J1U7 121 aa6.73□□□□□ -1.33
SDC1-206ENST00000482879 HMCN2Q8NDA2 5059 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms