RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 BAALC-AS2P0C853 105 aa6.19□□□□□ -1.42
USP39-215ENST00000481409 SPRR1BP22528 89 aa6.19□□□□□ -1.42
USP39-215ENST00000481409 ANKRD29Q8N6D5 301 aa6.19□□□□□ -1.42
USP39-215ENST00000481409 JMJD7-PLA2G4BH0Y9G9 81 aa6.17□□□□□ -1.42
USP39-215ENST00000481409 ERC2-IT1O76042 136 aa6.17□□□□□ -1.42
USP39-215ENST00000481409 PRO0461Q9UI25 63 aa6.17□□□□□ -1.42
USP39-215ENST00000481409 KRTAP4-8A0A0G2JLE6 195 aa6.16□□□□□ -1.42
USP39-215ENST00000481409 SMR3BP02814 79 aaPredicted RBP6.16□□□□□ -1.42
USP39-215ENST00000481409 LINC01547P58512 204 aaPredicted RBP6.16□□□□□ -1.42
USP39-215ENST00000481409 LINC00483Q53H64 154 aa6.16□□□□□ -1.42
USP39-215ENST00000481409 SPRR4Q96PI1 79 aa6.16□□□□□ -1.42
USP39-215ENST00000481409 Q8N1X5 172 aa6.15□□□□□ -1.42
USP39-215ENST00000481409 Q8N377 158 aa6.15□□□□□ -1.42
USP39-215ENST00000481409 LAMTOR3Q9UHA4 124 aa6.15□□□□□ -1.42
USP39-215ENST00000481409 KRTAP10-4P60372 401 aaPredicted RBP6.14□□□□□ -1.43
USP39-215ENST00000481409 FAM229BQ4G0N7 80 aa6.14□□□□□ -1.43
USP39-215ENST00000481409 KRTAP19-1Q8IUB9 90 aa6.14□□□□□ -1.43
USP39-215ENST00000481409 ST20-AS1Q8NBB2 130 aa6.14□□□□□ -1.43
USP39-215ENST00000481409 APOBP04114 4563 aaKnown RBP6.14□□□□□ -1.43
USP39-215ENST00000481409 F8WEM9 126 aa6.13□□□□□ -1.43
USP39-215ENST00000481409 NDUFV3P56181 108 aaKnown RBP6.13□□□□□ -1.43
USP39-215ENST00000481409 Q5VSD8 79 aa6.13□□□□□ -1.43
USP39-215ENST00000481409 GAGE2AQ6NT46 116 aa6.13□□□□□ -1.43
USP39-215ENST00000481409 DEFB105AQ8NG35 78 aa6.13□□□□□ -1.43
USP39-215ENST00000481409 H3BS24 57 aa6.12□□□□□ -1.43
USP39-215ENST00000481409 PDE6GP18545 87 aa6.12□□□□□ -1.43
USP39-215ENST00000481409 TEN1Q86WV5 123 aa6.12□□□□□ -1.43
USP39-215ENST00000481409 OBSCN-AS1Q96MR7 158 aa6.12□□□□□ -1.43
USP39-215ENST00000481409 IGLV8-61A0A075B6I0 122 aa6.11□□□□□ -1.43
USP39-215ENST00000481409 RBM3P98179 157 aaKnown RBP6.11□□□□□ -1.43
USP39-215ENST00000481409 Q6JHZ5 121 aa6.1□□□□□ -1.43
USP39-215ENST00000481409 SMIM29Q86T20 159 aa6.1□□□□□ -1.43
USP39-215ENST00000481409 MTURNQ8N3F0 131 aa6.1□□□□□ -1.43
USP39-215ENST00000481409 DSCR8Q96T75 97 aa6.09□□□□□ -1.43
USP39-215ENST00000481409 CRYGAP11844 174 aa6.08□□□□□ -1.44
USP39-215ENST00000481409 ETDBQ3ZM63 59 aa6.08□□□□□ -1.44
USP39-215ENST00000481409 SSBP3-AS1Q7Z2R9 100 aa6.08□□□□□ -1.44
USP39-215ENST00000481409 LOC110117498A0A087WWA1 95 aa6.07□□□□□ -1.44
USP39-215ENST00000481409 A0A1B0GW54 56 aa6.07□□□□□ -1.44
USP39-215ENST00000481409 KRTAP1-4P0C5Y4 121 aa6.07□□□□□ -1.44
USP39-215ENST00000481409 Q8NBF4 154 aa6.07□□□□□ -1.44
USP39-215ENST00000481409 VPS13BQ7Z7G8 4022 aa6.07□□□□□ -1.44
USP39-215ENST00000481409 TRBV7-4A0A0J9YYF1 115 aa6.06□□□□□ -1.44
USP39-215ENST00000481409 EPPK1P58107 5090 aaKnown RBP6.05□□□□□ -1.44
USP39-215ENST00000481409 RYR1P21817 5038 aa6.05□□□□□ -1.44
USP39-215ENST00000481409 J3QR89 54 aa6.05□□□□□ -1.44
USP39-215ENST00000481409 C3orf22Q8N5N4 141 aa6.05□□□□□ -1.44
USP39-215ENST00000481409 Q6Q795 121 aa6.04□□□□□ -1.44
USP39-215ENST00000481409 IGLV9-49A0A0B4J1Y8 123 aa6.03□□□□□ -1.44
USP39-215ENST00000481409 C9orf153Q5TBE3 101 aa6.03□□□□□ -1.44
USP39-215ENST00000481409 HSPG2P98160 4391 aa6.03□□□□□ -1.44
USP39-215ENST00000481409 CD164Q04900 197 aa6.02□□□□□ -1.45
USP39-215ENST00000481409 Q6ZQT0 140 aa6.02□□□□□ -1.45
USP39-215ENST00000481409 C14orf132Q9NPU4 83 aa6.02□□□□□ -1.45
USP39-215ENST00000481409 CCKP06307 115 aa6.01□□□□□ -1.45
USP39-215ENST00000481409 ACYP1P07311 99 aa6.01□□□□□ -1.45
USP39-215ENST00000481409 MOBPQ13875 183 aa6.01□□□□□ -1.45
USP39-215ENST00000481409 IGFL1Q6UW32 110 aa6.01□□□□□ -1.45
USP39-215ENST00000481409 A0A087X002 238 aa6□□□□□ -1.45
USP39-215ENST00000481409 FAM240AA0A1B0GVK7 77 aa6□□□□□ -1.45
USP39-215ENST00000481409 TYMSOSQ8TAI1 123 aa6□□□□□ -1.45
USP39-215ENST00000481409 ANAPC11Q9NYG5 84 aa6□□□□□ -1.45
USP39-215ENST00000481409 FAT1Q14517 4588 aa6□□□□□ -1.45
USP39-215ENST00000481409 KIAA1109Q2LD37 5005 aa5.99□□□□□ -1.45
USP39-215ENST00000481409 KRTAP13-2Q52LG2 175 aa5.99□□□□□ -1.45
USP39-215ENST00000481409 SPAG11AQ6PDA7 123 aa5.99□□□□□ -1.45
USP39-215ENST00000481409 K7ERU9 68 aa5.98□□□□□ -1.45
USP39-215ENST00000481409 OXTP01178 125 aa5.98□□□□□ -1.45
USP39-215ENST00000481409 SRRM2Q9UQ35 2752 aaKnown RBP5.98□□□□□ -1.45
USP39-215ENST00000481409 RPS29P62273 56 aaKnown RBP5.97□□□□□ -1.45
USP39-215ENST00000481409 KRTAP4-7Q9BYR0 210 aa5.97□□□□□ -1.45
USP39-215ENST00000481409 BIRC6Q9NR09 4857 aa5.97□□□□□ -1.45
USP39-215ENST00000481409 A0A1B0GV72 72 aa5.96□□□□□ -1.46
USP39-215ENST00000481409 A0A1W2PNM2 257 aa5.96□□□□□ -1.46
USP39-215ENST00000481409 SPINK1P00995 79 aa5.96□□□□□ -1.46
USP39-215ENST00000481409 PRR26Q8N8Z3 221 aa5.96□□□□□ -1.46
USP39-215ENST00000481409 TRBV7-7A0A0K0K1E9 115 aa5.95□□□□□ -1.46
USP39-215ENST00000481409 Q5XG85 94 aa5.95□□□□□ -1.46
USP39-215ENST00000481409 KRTAP17-1Q9BYP8 105 aa5.95□□□□□ -1.46
USP39-215ENST00000481409 SS18L2Q9UHA2 77 aa5.95□□□□□ -1.46
USP39-215ENST00000481409 KRTAP10-8P60410 259 aa5.94□□□□□ -1.46
USP39-215ENST00000481409 LCE1DQ5T752 114 aa5.94□□□□□ -1.46
USP39-215ENST00000481409 VPS25Q9BRG1 176 aa5.94□□□□□ -1.46
USP39-215ENST00000481409 LINC00304Q8N9R0 145 aa5.93□□□□□ -1.46
USP39-215ENST00000481409 LIMD2Q9BT23 127 aa5.93□□□□□ -1.46
USP39-215ENST00000481409 PKHD1L1Q86WI1 4243 aa5.93□□□□□ -1.46
USP39-215ENST00000481409 KRTAP29-1A8MX34 341 aaPredicted RBP5.92□□□□□ -1.46
USP39-215ENST00000481409 ASB16-AS1Q495Z4 193 aa5.92□□□□□ -1.46
USP39-215ENST00000481409 UBL5Q9BZL1 73 aa5.92□□□□□ -1.46
USP39-215ENST00000481409 A0A087WSZ3 146 aa5.89□□□□□ -1.47
USP39-215ENST00000481409 NREPQ16612 68 aa5.89□□□□□ -1.47
USP39-215ENST00000481409 KRTAP4-5Q9BYR2 181 aa5.88□□□□□ -1.47
USP39-215ENST00000481409 LINC00846Q9NV44 126 aa5.88□□□□□ -1.47
USP39-215ENST00000481409 A0A0G2JQZ4 141 aa5.87□□□□□ -1.47
USP39-215ENST00000481409 J3KT08 172 aa5.87□□□□□ -1.47
USP39-215ENST00000481409 HRCT1Q6UXD1 115 aa5.87□□□□□ -1.47
USP39-215ENST00000481409 ATP5EP2Q5VTU8 51 aa5.86□□□□□ -1.47
USP39-215ENST00000481409 Q6ZVQ6 151 aa5.86□□□□□ -1.47
USP39-215ENST00000481409 HERC2O95714 4834 aa5.86□□□□□ -1.47
USP39-215ENST00000481409 MT1HL1P0DM35 61 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms