RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 C16orf90A8MZG2 172 aa11.88□□□□□ -0.51
CCDC88B-207ENST00000479965 H3BNG1 76 aa11.88□□□□□ -0.51
CCDC88B-207ENST00000479965 TENM4Q6N022 2769 aa11.88□□□□□ -0.51
CCDC88B-207ENST00000479965 TLX1NBP0CAT3 122 aa11.88□□□□□ -0.51
CCDC88B-207ENST00000479965 A6NED7 52 aa11.87□□□□□ -0.51
CCDC88B-207ENST00000479965 LIMD2Q9BT23 127 aa11.87□□□□□ -0.51
CCDC88B-207ENST00000479965 SRRM2Q9UQ35 2752 aaKnown RBP11.86□□□□□ -0.51
CCDC88B-207ENST00000479965 A0A096LNI7 61 aa11.85□□□□□ -0.51
CCDC88B-207ENST00000479965 IGKV2-24A0A0C4DH68 120 aa11.85□□□□□ -0.51
CCDC88B-207ENST00000479965 IGLV5-37A0A075B6J1 123 aa11.84□□□□□ -0.51
CCDC88B-207ENST00000479965 CD164Q04900 197 aa11.84□□□□□ -0.51
CCDC88B-207ENST00000479965 OTOGQ6ZRI0 2925 aa11.83□□□□□ -0.52
CCDC88B-207ENST00000479965 HELZ2Q9BYK8 2649 aaKnown RBP11.83□□□□□ -0.52
CCDC88B-207ENST00000479965 OXLD1Q5BKU9 147 aa11.82□□□□□ -0.52
CCDC88B-207ENST00000479965 KRTAP29-1A8MX34 341 aaPredicted RBP11.82□□□□□ -0.52
CCDC88B-207ENST00000479965 SPANXA2-OT1Q8N9U9 137 aa11.81□□□□□ -0.52
CCDC88B-207ENST00000479965 H0Y9J4 135 aa11.81□□□□□ -0.52
CCDC88B-207ENST00000479965 CNBPP62633 177 aaKnown RBP11.8□□□□□ -0.52
CCDC88B-207ENST00000479965 PCOTHQ58A44 107 aa11.8□□□□□ -0.52
CCDC88B-207ENST00000479965 LINC00588Q9Y4M8 146 aa11.79□□□□□ -0.52
CCDC88B-207ENST00000479965 COA5Q86WW8 74 aa11.79□□□□□ -0.52
CCDC88B-207ENST00000479965 LCA10Q71F78 164 aa11.78□□□□□ -0.52
CCDC88B-207ENST00000479965 C11orf45Q8TAV5 145 aa11.78□□□□□ -0.52
CCDC88B-207ENST00000479965 FLNBO75369 2602 aaKnown RBP11.78□□□□□ -0.52
CCDC88B-207ENST00000479965 INAFM1C9JVW0 142 aa11.77□□□□□ -0.53
CCDC88B-207ENST00000479965 DNAH10OSP0CZ25 163 aa11.77□□□□□ -0.53
CCDC88B-207ENST00000479965 KTN1-AS1Q86SY8 53 aa11.77□□□□□ -0.53
CCDC88B-207ENST00000479965 H3BPC8 53 aa11.74□□□□□ -0.53
CCDC88B-207ENST00000479965 A8MWP4 228 aa11.73□□□□□ -0.53
CCDC88B-207ENST00000479965 SPAG11AQ6PDA7 123 aa11.73□□□□□ -0.53
CCDC88B-207ENST00000479965 C9orf163Q8N9P6 203 aa11.73□□□□□ -0.53
CCDC88B-207ENST00000479965 HECTD1Q9ULT8 2610 aa11.72□□□□□ -0.53
CCDC88B-207ENST00000479965 RBM12B-AS1Q9P1G2 102 aa11.72□□□□□ -0.53
CCDC88B-207ENST00000479965 FBN1P35555 2871 aaKnown RBP11.71□□□□□ -0.54
CCDC88B-207ENST00000479965 ATP11AUNQ6ZP68 121 aa11.7□□□□□ -0.54
CCDC88B-207ENST00000479965 Q75L30 129 aa11.7□□□□□ -0.54
CCDC88B-207ENST00000479965 NSD1Q96L73 2696 aaPredicted RBP11.7□□□□□ -0.54
CCDC88B-207ENST00000479965 MAST4O15021 2626 aa11.69□□□□□ -0.54
CCDC88B-207ENST00000479965 IGLV8-61A0A075B6I0 122 aa11.67□□□□□ -0.54
CCDC88B-207ENST00000479965 KRTAP10-11P60412 298 aa11.67□□□□□ -0.54
CCDC88B-207ENST00000479965 LINC00472Q9H8W2 130 aa11.66□□□□□ -0.54
CCDC88B-207ENST00000479965 NOTCH1P46531 2555 aa11.65□□□□□ -0.54
CCDC88B-207ENST00000479965 LOC101927531A0A1B0GV80 90 aa11.65□□□□□ -0.54
CCDC88B-207ENST00000479965 CSMD3Q7Z407 3707 aa11.65□□□□□ -0.54
CCDC88B-207ENST00000479965 IGLV7-46A0A075B6I9 117 aa11.64□□□□□ -0.55
CCDC88B-207ENST00000479965 ANK2Q01484 3957 aa11.64□□□□□ -0.55
CCDC88B-207ENST00000479965 NDUFS5O43920 106 aa11.63□□□□□ -0.55
CCDC88B-207ENST00000479965 PHF5AQ7RTV0 110 aaKnown RBP11.62□□□□□ -0.55
CCDC88B-207ENST00000479965 MMP24-AS1A0A0U1RRL7 71 aa11.62□□□□□ -0.55
CCDC88B-207ENST00000479965 CHTF8P0CG12 524 aa11.61□□□□□ -0.55
CCDC88B-207ENST00000479965 CDC42SE1Q9NRR8 79 aa11.61□□□□□ -0.55
CCDC88B-207ENST00000479965 KRTAP11-1Q8IUC1 163 aa11.6□□□□□ -0.55
CCDC88B-207ENST00000479965 COL6A5A8TX70 2615 aa11.59□□□□□ -0.55
CCDC88B-207ENST00000479965 A6NN06 94 aa11.59□□□□□ -0.55
CCDC88B-207ENST00000479965 COL7A1Q02388 2944 aa11.57□□□□□ -0.56
CCDC88B-207ENST00000479965 SPINK7P58062 85 aa11.55□□□□□ -0.56
CCDC88B-207ENST00000479965 MOBPQ13875 183 aa11.55□□□□□ -0.56
CCDC88B-207ENST00000479965 IGLV9-49A0A0B4J1Y8 123 aa11.53□□□□□ -0.56
CCDC88B-207ENST00000479965 LINC01558Q9Y6Z2 57 aa11.52□□□□□ -0.57
CCDC88B-207ENST00000479965 STAB1Q9NY15 2570 aa11.52□□□□□ -0.57
CCDC88B-207ENST00000479965 IGHV6-1A0A0B4J1U7 121 aa11.51□□□□□ -0.57
CCDC88B-207ENST00000479965 DNAH10Q8IVF4 4471 aa11.5□□□□□ -0.57
CCDC88B-207ENST00000479965 NBEAL1Q6ZS30 2694 aa11.5□□□□□ -0.57
CCDC88B-207ENST00000479965 C7orf65Q6ZTY9 151 aa11.49□□□□□ -0.57
CCDC88B-207ENST00000479965 HRES1P13985 223 aa11.48□□□□□ -0.57
CCDC88B-207ENST00000479965 TENM2Q9NT68 2774 aa11.48□□□□□ -0.57
CCDC88B-207ENST00000479965 TP53AIP1Q9HCN2 124 aa11.46□□□□□ -0.57
CCDC88B-207ENST00000479965 SPRR1BP22528 89 aa11.46□□□□□ -0.58
CCDC88B-207ENST00000479965 C8orf17Q9NRJ1 99 aa11.45□□□□□ -0.58
CCDC88B-207ENST00000479965 KRTAP1-5Q9BYS1 174 aa11.44□□□□□ -0.58
CCDC88B-207ENST00000479965 PRR26Q8N8Z3 221 aa11.43□□□□□ -0.58
CCDC88B-207ENST00000479965 CDK2AP2O75956 126 aa11.41□□□□□ -0.58
CCDC88B-207ENST00000479965 DNAH1Q9P2D7 4330 aa11.41□□□□□ -0.58
CCDC88B-207ENST00000479965 PLAC8Q9NZF1 115 aa11.4□□□□□ -0.58
CCDC88B-207ENST00000479965 Q96NJ1 140 aa11.39□□□□□ -0.59
CCDC88B-207ENST00000479965 Q6ZR54 194 aa11.38□□□□□ -0.59
CCDC88B-207ENST00000479965 K7EIL1 84 aa11.38□□□□□ -0.59
CCDC88B-207ENST00000479965 LYSTQ99698 3801 aa11.37□□□□□ -0.59
CCDC88B-207ENST00000479965 KMT2BQ9UMN6 2715 aaPredicted RBP11.37□□□□□ -0.59
CCDC88B-207ENST00000479965 J3QKU1 62 aa11.37□□□□□ -0.59
CCDC88B-207ENST00000479965 A0A087X002 238 aa11.35□□□□□ -0.59
CCDC88B-207ENST00000479965 NOTCH2NLQ7Z3S9 236 aa11.35□□□□□ -0.59
CCDC88B-207ENST00000479965 PRAC1Q96KF2 57 aa11.35□□□□□ -0.59
CCDC88B-207ENST00000479965 MRPL34Q9BQ48 92 aaKnown RBP11.34□□□□□ -0.59
CCDC88B-207ENST00000479965 A0A1B0GVX0 72 aa11.34□□□□□ -0.59
CCDC88B-207ENST00000479965 ASB16-AS1Q495Z4 193 aa11.32□□□□□ -0.6
CCDC88B-207ENST00000479965 UBE2DNLQ8IWF7 75 aa11.32□□□□□ -0.6
CCDC88B-207ENST00000479965 SPINK6Q6UWN8 80 aa11.31□□□□□ -0.6
CCDC88B-207ENST00000479965 PANO1I0J062 215 aa11.31□□□□□ -0.6
CCDC88B-207ENST00000479965 LINC00313P59037 77 aa11.3□□□□□ -0.6
CCDC88B-207ENST00000479965 ANAPC11Q9NYG5 84 aa11.3□□□□□ -0.6
CCDC88B-207ENST00000479965 STAB2Q8WWQ8 2551 aa11.27□□□□□ -0.61
CCDC88B-207ENST00000479965 MDFIQ99750 246 aa11.26□□□□□ -0.61
CCDC88B-207ENST00000479965 ADM2Q7Z4H4 148 aa11.26□□□□□ -0.61
CCDC88B-207ENST00000479965 C14orf177Q52M58 125 aa11.24□□□□□ -0.61
CCDC88B-207ENST00000479965 Q5W150 140 aa11.24□□□□□ -0.61
CCDC88B-207ENST00000479965 DNAH9Q9NYC9 4486 aa11.23□□□□□ -0.61
CCDC88B-207ENST00000479965 KRTAP13-1Q8IUC0 172 aa11.21□□□□□ -0.61
CCDC88B-207ENST00000479965 C8orf87E5RJ46 101 aa11.2□□□□□ -0.62
CCDC88B-207ENST00000479965 ACYP2P14621 99 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms