RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 EPM2AB3EWF7 344 aa8.82□□□□□ -1
USP42-206ENST00000479544 KRTAP10-3P60369 221 aa8.82□□□□□ -1
USP42-206ENST00000479544 CIRBP-AS1Q8TBR5 109 aa8.81□□□□□ -1
USP42-206ENST00000479544 CASC10Q5T4H9 136 aa8.81□□□□□ -1
USP42-206ENST00000479544 LINC00612Q8N6U2 182 aa8.81□□□□□ -1
USP42-206ENST00000479544 IGFL1Q6UW32 110 aa8.8□□□□□ -1
USP42-206ENST00000479544 SPINK1P00995 79 aa8.79□□□□□ -1
USP42-206ENST00000479544 IGLV1-50A0A075B6I6 118 aa8.78□□□□□ -1
USP42-206ENST00000479544 LINC00588Q9Y4M8 146 aa8.76□□□□□ -1.01
USP42-206ENST00000479544 COA5Q86WW8 74 aa8.76□□□□□ -1.01
USP42-206ENST00000479544 DMBT1Q9UGM3 2413 aaPredicted RBP8.75□□□□□ -1.01
USP42-206ENST00000479544 DSCR10P59022 87 aa8.74□□□□□ -1.01
USP42-206ENST00000479544 IGLV8-61A0A075B6I0 122 aa8.73□□□□□ -1.01
USP42-206ENST00000479544 C4orf48Q5BLP8 95 aa8.73□□□□□ -1.01
USP42-206ENST00000479544 MOBPQ13875 183 aa8.72□□□□□ -1.01
USP42-206ENST00000479544 A0A1B0GW54 56 aa8.72□□□□□ -1.01
USP42-206ENST00000479544 F8WDY8 70 aa8.71□□□□□ -1.01
USP42-206ENST00000479544 IGLV5-48A0A075B6I7 105 aa8.7□□□□□ -1.02
USP42-206ENST00000479544 H3BNG1 76 aa8.69□□□□□ -1.02
USP42-206ENST00000479544 PRR15Q8IV56 129 aa8.68□□□□□ -1.02
USP42-206ENST00000479544 NBPF19A0A087WUL8 3843 aa8.68□□□□□ -1.02
USP42-206ENST00000479544 FBN3Q75N90 2809 aa8.68□□□□□ -1.02
USP42-206ENST00000479544 A8MWP4 228 aa8.68□□□□□ -1.02
USP42-206ENST00000479544 IGKV2D-30A0A075B6S6 120 aa8.66□□□□□ -1.02
USP42-206ENST00000479544 IGKV2-30P06310 120 aa8.66□□□□□ -1.02
USP42-206ENST00000479544 ANAPC11Q9NYG5 84 aa8.66□□□□□ -1.02
USP42-206ENST00000479544 DNAH10OSP0CZ25 163 aa8.64□□□□□ -1.03
USP42-206ENST00000479544 ZNF706Q9Y5V0 76 aaPredicted RBP8.64□□□□□ -1.03
USP42-206ENST00000479544 LOC101927531A0A1B0GV80 90 aa8.63□□□□□ -1.03
USP42-206ENST00000479544 C16orf90A8MZG2 172 aa8.63□□□□□ -1.03
USP42-206ENST00000479544 ZFHX3Q15911 3703 aa8.63□□□□□ -1.03
USP42-206ENST00000479544 A0A1B0GU69 56 aa8.62□□□□□ -1.03
USP42-206ENST00000479544 KRTAP10-11P60412 298 aa8.62□□□□□ -1.03
USP42-206ENST00000479544 H3BPC8 53 aa8.61□□□□□ -1.03
USP42-206ENST00000479544 Q1T7F1 81 aa8.6□□□□□ -1.03
USP42-206ENST00000479544 CD164Q04900 197 aa8.6□□□□□ -1.03
USP42-206ENST00000479544 PRR26Q8N8Z3 221 aa8.6□□□□□ -1.03
USP42-206ENST00000479544 TP53AIP1Q9HCN2 124 aa8.6□□□□□ -1.03
USP42-206ENST00000479544 K7ERS5 55 aa8.6□□□□□ -1.03
USP42-206ENST00000479544 ATP11AUNQ6ZP68 121 aa8.59□□□□□ -1.03
USP42-206ENST00000479544 BSNQ9UPA5 3926 aa8.58□□□□□ -1.04
USP42-206ENST00000479544 KTN1-AS1Q86SY8 53 aa8.57□□□□□ -1.04
USP42-206ENST00000479544 CYP4F30PQ9H0H9 118 aa8.57□□□□□ -1.04
USP42-206ENST00000479544 SPRR4Q96PI1 79 aa8.55□□□□□ -1.04
USP42-206ENST00000479544 ACYP2P14621 99 aa8.55□□□□□ -1.04
USP42-206ENST00000479544 LY6G6CO95867 125 aa8.54□□□□□ -1.04
USP42-206ENST00000479544 Q8N9P0 234 aaPredicted RBP8.54□□□□□ -1.04
USP42-206ENST00000479544 C8orf17Q9NRJ1 99 aa8.54□□□□□ -1.04
USP42-206ENST00000479544 VWFP04275 2813 aa8.53□□□□□ -1.04
USP42-206ENST00000479544 MRPL34Q9BQ48 92 aaKnown RBP8.53□□□□□ -1.04
USP42-206ENST00000479544 A8MU10 97 aa8.53□□□□□ -1.04
USP42-206ENST00000479544 Q5VV11 94 aa8.51□□□□□ -1.05
USP42-206ENST00000479544 SPACA4Q8TDM5 124 aa8.51□□□□□ -1.05
USP42-206ENST00000479544 TLX1NBP0CAT3 122 aa8.51□□□□□ -1.05
USP42-206ENST00000479544 CSMD2Q7Z408 3487 aa8.51□□□□□ -1.05
USP42-206ENST00000479544 IGLV5-52A0A0A0MRZ9 124 aa8.51□□□□□ -1.05
USP42-206ENST00000479544 RBM12B-AS1Q9P1G2 102 aa8.5□□□□□ -1.05
USP42-206ENST00000479544 CNBPP62633 177 aaKnown RBP8.49□□□□□ -1.05
USP42-206ENST00000479544 C7orf65Q6ZTY9 151 aa8.49□□□□□ -1.05
USP42-206ENST00000479544 TENM3Q9P273 2699 aa8.48□□□□□ -1.05
USP42-206ENST00000479544 FBN1P35555 2871 aaKnown RBP8.48□□□□□ -1.05
USP42-206ENST00000479544 FLG2Q5D862 2391 aaPredicted RBP8.48□□□□□ -1.05
USP42-206ENST00000479544 PLA2G2DQ9UNK4 145 aa8.47□□□□□ -1.05
USP42-206ENST00000479544 SPANXA2-OT1Q8N9U9 137 aa8.47□□□□□ -1.05
USP42-206ENST00000479544 NUPR2A6NF83 97 aa8.46□□□□□ -1.05
USP42-206ENST00000479544 WWC2-AS2Q96NR7 200 aa8.46□□□□□ -1.05
USP42-206ENST00000479544 PRAC1Q96KF2 57 aa8.46□□□□□ -1.05
USP42-206ENST00000479544 C8orf87E5RJ46 101 aa8.45□□□□□ -1.06
USP42-206ENST00000479544 A0A1B0GVX0 72 aa8.45□□□□□ -1.06
USP42-206ENST00000479544 KRTAP26-1Q6PEX3 210 aa8.44□□□□□ -1.06
USP42-206ENST00000479544 TENM1Q9UKZ4 2725 aa8.44□□□□□ -1.06
USP42-206ENST00000479544 CDC42SE1Q9NRR8 79 aa8.44□□□□□ -1.06
USP42-206ENST00000479544 K7EIL1 84 aa8.43□□□□□ -1.06
USP42-206ENST00000479544 LINC00313P59037 77 aa8.42□□□□□ -1.06
USP42-206ENST00000479544 PKD1L1Q8TDX9 2849 aa8.41□□□□□ -1.06
USP42-206ENST00000479544 NBDYA0A0U1RRE5 68 aa8.41□□□□□ -1.06
USP42-206ENST00000479544 SPRR1AP35321 89 aa8.41□□□□□ -1.06
USP42-206ENST00000479544 SPINK7P58062 85 aa8.4□□□□□ -1.06
USP42-206ENST00000479544 IGLV7-46A0A075B6I9 117 aa8.39□□□□□ -1.07
USP42-206ENST00000479544 C9orf163Q8N9P6 203 aa8.39□□□□□ -1.07
USP42-206ENST00000479544 IGLV5-37A0A075B6J1 123 aa8.38□□□□□ -1.07
USP42-206ENST00000479544 TNP2Q05952 138 aa8.38□□□□□ -1.07
USP42-206ENST00000479544 RTL8CO15255 209 aa8.37□□□□□ -1.07
USP42-206ENST00000479544 LCA10Q71F78 164 aa8.37□□□□□ -1.07
USP42-206ENST00000479544 MMP24-AS1A0A0U1RRL7 71 aa8.37□□□□□ -1.07
USP42-206ENST00000479544 UQCR11O14957 56 aa8.37□□□□□ -1.07
USP42-206ENST00000479544 MIR22HGQ0VDD5 57 aa8.37□□□□□ -1.07
USP42-206ENST00000479544 Q75L30 129 aa8.35□□□□□ -1.07
USP42-206ENST00000479544 ZCCHC13Q8WW36 166 aaKnown RBP8.34□□□□□ -1.07
USP42-206ENST00000479544 PSORS1C2Q9UIG4 136 aa8.34□□□□□ -1.07
USP42-206ENST00000479544 C1orf134Q5TEV5 83 aa8.34□□□□□ -1.07
USP42-206ENST00000479544 LINC00472Q9H8W2 130 aa8.33□□□□□ -1.08
USP42-206ENST00000479544 HRES1P13985 223 aa8.33□□□□□ -1.08
USP42-206ENST00000479544 KRTAP4-16G5E9R7 235 aaPredicted RBP8.32□□□□□ -1.08
USP42-206ENST00000479544 FAM229AH3BQW9 127 aa8.32□□□□□ -1.08
USP42-206ENST00000479544 Q96NJ1 140 aa8.3□□□□□ -1.08
USP42-206ENST00000479544 KRTAP1-5Q9BYS1 174 aa8.3□□□□□ -1.08
USP42-206ENST00000479544 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.3□□□□□ -1.08
USP42-206ENST00000479544 ZNF861PO60384 105 aa8.29□□□□□ -1.08
USP42-206ENST00000479544 AKAP9Q99996 3911 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms