RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 RPS27P42677 84 aaKnown RBP0.58□□□□□ -2.32
VPS50-213ENST00000477572 COX6A2Q02221 97 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 WFDC13Q8IUB5 93 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 USMG5Q96IX5 58 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 C6orf48Q9UBA6 75 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 GVINP1Q7Z2Y8 2422 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 SPTBN1Q01082 2364 aaKnown RBP0.57□□□□□ -2.32
VPS50-213ENST00000477572 ZNF292O60281 2723 aa0.57□□□□□ -2.32
VPS50-213ENST00000477572 H3BSH0 61 aa0.57□□□□□ -2.32
VPS50-213ENST00000477572 RPL39P62891 51 aaKnown RBP0.57□□□□□ -2.32
VPS50-213ENST00000477572 PIGYQ3MUY2 71 aa0.57□□□□□ -2.32
VPS50-213ENST00000477572 WFDC10BQ8IUB3 73 aa0.57□□□□□ -2.32
VPS50-213ENST00000477572 SPTBN2O15020 2390 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 CACNA1HO95180 2353 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 CCL22O00626 93 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 DEFB130BP0DP73 79 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 DEFB130AP0DP74 79 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 SPRR1AP35321 89 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 POLR2KP53803 58 aaKnown RBP0.56□□□□□ -2.32
VPS50-213ENST00000477572 H1FX-AS1Q4G0G2 97 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 LINC01590Q5TEZ4 76 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 COX6B2Q6YFQ2 88 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 RPL39LQ96EH5 51 aaKnown RBP0.56□□□□□ -2.32
VPS50-213ENST00000477572 KAAG1Q9UBP8 84 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 PRO0255Q9UI72 69 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 APLNQ9ULZ1 77 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 ABCA12Q86UK0 2595 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 CELSR2Q9HCU4 2923 aa0.56□□□□□ -2.32
VPS50-213ENST00000477572 TRANK1O15050 2925 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 CHD7Q9P2D1 2997 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 ANK2Q01484 3957 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 A0A0C4DFX4 3053 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 SPINK9Q5DT21 86 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 DEFB105AQ8NG35 78 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 LEAP2Q969E1 77 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 LYSTQ99698 3801 aa0.55□□□□□ -2.32
VPS50-213ENST00000477572 BSNQ9UPA5 3926 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 F8P00451 2351 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 IGLV5-48A0A075B6I7 105 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 MMP24-AS1A0A0U1RRL7 71 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 KLK9Q2XQG4 91 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 CSMD3Q7Z407 3707 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 ABCA2Q9BZC7 2435 aa0.54□□□□□ -2.32
VPS50-213ENST00000477572 POLQO75417 2590 aa0.53□□□□□ -2.32
VPS50-213ENST00000477572 CEP290O15078 2479 aa0.53□□□□□ -2.32
VPS50-213ENST00000477572 SPRR1BP22528 89 aa0.53□□□□□ -2.32
VPS50-213ENST00000477572 AKAP13Q12802 2813 aa0.53□□□□□ -2.32
VPS50-213ENST00000477572 PRRC2CQ9Y520 2896 aaKnown RBP0.53□□□□□ -2.32
VPS50-213ENST00000477572 NBPF19A0A087WUL8 3843 aa0.53□□□□□ -2.33
VPS50-213ENST00000477572 SRRM2Q9UQ35 2752 aaKnown RBP0.52□□□□□ -2.33
VPS50-213ENST00000477572 CHD9Q3L8U1 2897 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 PRLHP81277 87 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 WT1-ASQ06250 92 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 Q5VSD8 79 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 USP24Q9UPU5 2620 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 MEGF8Q7Z7M0 2845 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 OTOGQ6ZRI0 2925 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 VPS13BQ7Z7G8 4022 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 ACACAQ13085 2346 aa0.52□□□□□ -2.33
VPS50-213ENST00000477572 MGAQ8IWI9 3026 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 A0A0D9SG42 100 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 A8MTW9 85 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 ATRQ13535 2644 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 DEFB104AQ8WTQ1 72 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 TTC28Q96AY4 2481 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 S4R3F8 94 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 CELSR1Q9NYQ6 3014 aa0.51□□□□□ -2.33
VPS50-213ENST00000477572 UBR5O95071 2799 aaPredicted RBP0.51□□□□□ -2.33
VPS50-213ENST00000477572 AKAP6Q13023 2319 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 VWFP04275 2813 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 PRKDCP78527 4128 aaKnown RBP0.5□□□□□ -2.33
VPS50-213ENST00000477572 M0QY20 66 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 DEFB131AP59861 70 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 PRCDQ00LT1 54 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 CLPSL2Q6UWE3 100 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 DEFB106AQ8N104 65 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 TENM2Q9NT68 2774 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 DNAH11Q96DT5 4516 aa0.5□□□□□ -2.33
VPS50-213ENST00000477572 PKD1L2Q7Z442 2459 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 NCOR1O75376 2440 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 SPTA1P02549 2419 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 EP300Q09472 2414 aaPredicted RBP0.49□□□□□ -2.33
VPS50-213ENST00000477572 CREBBPQ92793 2442 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 WNK1Q9H4A3 2382 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 SPENQ96T58 3664 aaKnown RBP0.49□□□□□ -2.33
VPS50-213ENST00000477572 CHD6Q8TD26 2715 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 HECTD1Q9ULT8 2610 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 H3BUA1 57 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 TOMM7Q9P0U1 55 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 SPTBN4Q9H254 2564 aa0.49□□□□□ -2.33
VPS50-213ENST00000477572 PDZD2O15018 2839 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 SPINK1P00995 79 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 NAV2Q8IVL1 2488 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 CCDC168Q8NDH2 2452 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 KMT2AQ03164 3969 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 FAT2Q9NYQ8 4349 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 COL6A5A8TX70 2615 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 TNRC18O15417 2968 aaPredicted RBP0.48□□□□□ -2.33
VPS50-213ENST00000477572 CRYBG3Q68DQ2 2970 aa0.48□□□□□ -2.33
VPS50-213ENST00000477572 NBASA2RRP1 2371 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms