RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 LINC00643Q86TS7 51 aa-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 V9GYS6 101 aa-0.93□□□□□ -2.56
CCDC88A-212ENST00000474059 C9orf92A6NGG3 77 aa-0.94□□□□□ -2.56
CCDC88A-212ENST00000474059 ZZEF1O43149 2961 aa-0.95□□□□□ -2.56
CCDC88A-212ENST00000474059 ANKRD50Q9ULJ7 1429 aa-0.95□□□□□ -2.56
CCDC88A-212ENST00000474059 PIK3C2BO00750 1634 aa-0.95□□□□□ -2.56
CCDC88A-212ENST00000474059 DEPDC5O75140 1603 aa-0.95□□□□□ -2.56
CCDC88A-212ENST00000474059 DIP2BQ9P265 1576 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 SPG11Q96JI7 2443 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 TACC2O95359 2948 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 PVALEFA0A1B0GWK0 134 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 DMXL1Q9Y485 3027 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 KIAA1109Q2LD37 5005 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 ANK3Q12955 4377 aaKnown RBP-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 HECTD1Q9ULT8 2610 aa-0.96□□□□□ -2.56
CCDC88A-212ENST00000474059 DDX60LQ5H9U9 1706 aaKnown RBP-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 LCE6AA0A183 80 aa-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 H0YAA0 97 aa-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 ACYP1P07311 99 aa-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 VPS13DQ5THJ4 4388 aa-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 EPG5Q9HCE0 2579 aa-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 TEP1Q99973 2627 aaKnown RBP-0.97□□□□□ -2.56
CCDC88A-212ENST00000474059 VPS13BQ7Z7G8 4022 aa-0.98□□□□□ -2.57
CCDC88A-212ENST00000474059 EPPK1P58107 5090 aaKnown RBP-0.98□□□□□ -2.57
CCDC88A-212ENST00000474059 DNAH3Q8TD57 4116 aa-0.98□□□□□ -2.57
CCDC88A-212ENST00000474059 MUC17Q685J3 4493 aa-0.98□□□□□ -2.57
CCDC88A-212ENST00000474059 APOBP04114 4563 aaKnown RBP-0.98□□□□□ -2.57
CCDC88A-212ENST00000474059 MAP3K1Q13233 1512 aa-0.99□□□□□ -2.57
CCDC88A-212ENST00000474059 PLCH1Q4KWH8 1693 aa-0.99□□□□□ -2.57
CCDC88A-212ENST00000474059 DEFA5Q01523 94 aa-0.99□□□□□ -2.57
CCDC88A-212ENST00000474059 USP9YO00507 2555 aaPredicted RBP-0.99□□□□□ -2.57
CCDC88A-212ENST00000474059 FASNP49327 2511 aaKnown RBP-0.99□□□□□ -2.57
CCDC88A-212ENST00000474059 LAMA1P25391 3075 aa-1□□□□□ -2.57
CCDC88A-212ENST00000474059 CCDC88BA6NC98 1476 aa-1□□□□□ -2.57
CCDC88A-212ENST00000474059 UMAD1C9J7I0 102 aa-1.01□□□□□ -2.57
CCDC88A-212ENST00000474059 IFI27P40305 119 aaPredicted RBP-1.01□□□□□ -2.57
CCDC88A-212ENST00000474059 CFAP43Q8NDM7 1665 aa-1.01□□□□□ -2.57
CCDC88A-212ENST00000474059 ITPR3Q14573 2671 aa-1.02□□□□□ -2.57
CCDC88A-212ENST00000474059 IFI6P09912 130 aa-1.02□□□□□ -2.57
CCDC88A-212ENST00000474059 PRLHP81277 87 aa-1.02□□□□□ -2.57
CCDC88A-212ENST00000474059 ANKHD1Q8IWZ3 2542 aaKnown RBP-1.02□□□□□ -2.57
CCDC88A-212ENST00000474059 LAMA2P24043 3122 aaKnown RBP-1.02□□□□□ -2.57
CCDC88A-212ENST00000474059 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.03□□□□□ -2.57
CCDC88A-212ENST00000474059 LYNX1G3V0Z9 82 aa-1.03□□□□□ -2.57
CCDC88A-212ENST00000474059 TDRG1Q3Y452 100 aa-1.03□□□□□ -2.57
CCDC88A-212ENST00000474059 ANKRD11Q6UB99 2663 aaPredicted RBP-1.03□□□□□ -2.58
CCDC88A-212ENST00000474059 UACAQ9BZF9 1416 aa-1.04□□□□□ -2.58
CCDC88A-212ENST00000474059 KANTRA0A1W2PQU2 76 aa-1.04□□□□□ -2.58
CCDC88A-212ENST00000474059 NDUFA4O00483 81 aa-1.04□□□□□ -2.58
CCDC88A-212ENST00000474059 ITSN1Q15811 1721 aa-1.04□□□□□ -2.58
CCDC88A-212ENST00000474059 RICTORQ6R327 1708 aa-1.04□□□□□ -2.58
CCDC88A-212ENST00000474059 DSPP15924 2871 aaKnown RBP-1.05□□□□□ -2.58
CCDC88A-212ENST00000474059 DEFB130BP0DP73 79 aa-1.05□□□□□ -2.58
CCDC88A-212ENST00000474059 DEFB130AP0DP74 79 aa-1.05□□□□□ -2.58
CCDC88A-212ENST00000474059 S4R3F8 94 aa-1.05□□□□□ -2.58
CCDC88A-212ENST00000474059 KALRNO60229 2985 aa-1.05□□□□□ -2.58
CCDC88A-212ENST00000474059 IAPPP10997 89 aa-1.06□□□□□ -2.58
CCDC88A-212ENST00000474059 NREPQ16612 68 aa-1.06□□□□□ -2.58
CCDC88A-212ENST00000474059 DNAH11Q96DT5 4516 aa-1.06□□□□□ -2.58
CCDC88A-212ENST00000474059 BIRC6Q9NR09 4857 aa-1.06□□□□□ -2.58
CCDC88A-212ENST00000474059 GCN1Q92616 2671 aaKnown RBP-1.07□□□□□ -2.58
CCDC88A-212ENST00000474059 ATP5EP2Q5VTU8 51 aa-1.07□□□□□ -2.58
CCDC88A-212ENST00000474059 MYO18BQ8IUG5 2567 aa-1.07□□□□□ -2.58
CCDC88A-212ENST00000474059 RYR2Q92736 4967 aa-1.08□□□□□ -2.58
CCDC88A-212ENST00000474059 TJP1Q07157 1748 aa-1.09□□□□□ -2.58
CCDC88A-212ENST00000474059 THOC2Q8NI27 1593 aaKnown RBP-1.09□□□□□ -2.58
CCDC88A-212ENST00000474059 ZC3H13Q5T200 1668 aaKnown RBP-1.1□□□□□ -2.58
CCDC88A-212ENST00000474059 ANKRD36CQ5JPF3 1778 aa-1.1□□□□□ -2.59
CCDC88A-212ENST00000474059 DEFB106AQ8N104 65 aa-1.1□□□□□ -2.59
CCDC88A-212ENST00000474059 A0A087WXM4 84 aa-1.11□□□□□ -2.59
CCDC88A-212ENST00000474059 TRIOO75962 3097 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 MTORP42345 2549 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 DEFB110Q30KQ9 67 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 DEFB121Q5J5C9 76 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 ST20Q9HBF5 79 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 KDM5DQ9BY66 1539 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 SACSQ9NZJ4 4579 aa-1.12□□□□□ -2.59
CCDC88A-212ENST00000474059 RNF213Q63HN8 5207 aa-1.13□□□□□ -2.59
CCDC88A-212ENST00000474059 RNF17Q9BXT8 1623 aaKnown RBP-1.13□□□□□ -2.59
CCDC88A-212ENST00000474059 DEFB131BA0A096LNP1 70 aa-1.13□□□□□ -2.59
CCDC88A-212ENST00000474059 SMIM13P0DJ93 91 aa-1.13□□□□□ -2.59
CCDC88A-212ENST00000474059 DCAF1Q9Y4B6 1507 aa-1.14□□□□□ -2.59
CCDC88A-212ENST00000474059 NIPBLQ6KC79 2804 aaeCLIP-1.14□□□□□ -2.59
CCDC88A-212ENST00000474059 ITSN2Q9NZM3 1697 aa-1.15□□□□□ -2.59
CCDC88A-212ENST00000474059 ADIRFQ15847 76 aa-1.15□□□□□ -2.59
CCDC88A-212ENST00000474059 PARP4Q9UKK3 1724 aaKnown RBP-1.15□□□□□ -2.59
CCDC88A-212ENST00000474059 KIAA0586Q9BVV6 1533 aa-1.15□□□□□ -2.59
CCDC88A-212ENST00000474059 ACACAQ13085 2346 aa-1.16□□□□□ -2.59
CCDC88A-212ENST00000474059 RB1CC1Q8TDY2 1594 aa-1.16□□□□□ -2.59
CCDC88A-212ENST00000474059 MED14O60244 1454 aa-1.16□□□□□ -2.59
CCDC88A-212ENST00000474059 ARHGAP35Q9NRY4 1499 aa-1.16□□□□□ -2.59
CCDC88A-212ENST00000474059 PLECQ15149 4684 aaKnown RBP-1.16□□□□□ -2.59
CCDC88A-212ENST00000474059 H3BUT2 72 aa-1.16□□□□□ -2.6
CCDC88A-212ENST00000474059 HMGA1P17096 107 aaKnown RBP-1.16□□□□□ -2.6
CCDC88A-212ENST00000474059 GNG2P59768 71 aa-1.16□□□□□ -2.6
CCDC88A-212ENST00000474059 EIF2AK4Q9P2K8 1649 aaKnown RBP-1.16□□□□□ -2.6
CCDC88A-212ENST00000474059 DNAH1Q9P2D7 4330 aa-1.16□□□□□ -2.6
CCDC88A-212ENST00000474059 HFM1A2PYH4 1435 aa-1.16□□□□□ -2.6
CCDC88A-212ENST00000474059 NBEAQ8NFP9 2946 aa-1.17□□□□□ -2.6
CCDC88A-212ENST00000474059 USP9XQ93008 2570 aaPredicted RBP-1.17□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms