RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 ACYP1P07311 99 aa7.84□□□□□ -1.15
VPS13D-205ENST00000473099 C14orf132Q9NPU4 83 aa7.84□□□□□ -1.15
VPS13D-205ENST00000473099 KRTAP17-1Q9BYP8 105 aa7.82□□□□□ -1.16
VPS13D-205ENST00000473099 PCLOQ9Y6V0 5065 aa7.82□□□□□ -1.16
VPS13D-205ENST00000473099 TRBV7-4A0A0J9YYF1 115 aa7.81□□□□□ -1.16
VPS13D-205ENST00000473099 CCKP06307 115 aa7.81□□□□□ -1.16
VPS13D-205ENST00000473099 HAMPP81172 84 aa7.81□□□□□ -1.16
VPS13D-205ENST00000473099 SPRR4Q96PI1 79 aa7.81□□□□□ -1.16
VPS13D-205ENST00000473099 XGP55808 180 aa7.8□□□□□ -1.16
VPS13D-205ENST00000473099 GAGE2AQ6NT46 116 aa7.8□□□□□ -1.16
VPS13D-205ENST00000473099 KIAA1109Q2LD37 5005 aa7.8□□□□□ -1.16
VPS13D-205ENST00000473099 A0A1B0GV72 72 aa7.79□□□□□ -1.16
VPS13D-205ENST00000473099 LINC00483Q53H64 154 aa7.79□□□□□ -1.16
VPS13D-205ENST00000473099 Q6ZQT0 140 aa7.79□□□□□ -1.16
VPS13D-205ENST00000473099 SMIM29Q86T20 159 aa7.79□□□□□ -1.16
VPS13D-205ENST00000473099 IGLV8-61A0A075B6I0 122 aa7.78□□□□□ -1.16
VPS13D-205ENST00000473099 RPL37AP61513 92 aaKnown RBP7.77□□□□□ -1.17
VPS13D-205ENST00000473099 C3orf22Q8N5N4 141 aa7.77□□□□□ -1.17
VPS13D-205ENST00000473099 A0A1B0GW54 56 aa7.76□□□□□ -1.17
VPS13D-205ENST00000473099 Q6JHZ5 121 aa7.76□□□□□ -1.17
VPS13D-205ENST00000473099 LRP1BQ9NZR2 4599 aa7.76□□□□□ -1.17
VPS13D-205ENST00000473099 DYNC1H1Q14204 4646 aaKnown RBP7.74□□□□□ -1.17
VPS13D-205ENST00000473099 CDK2AP2O75956 126 aa7.74□□□□□ -1.17
VPS13D-205ENST00000473099 VPS25Q9BRG1 176 aa7.73□□□□□ -1.17
VPS13D-205ENST00000473099 FAM229BQ4G0N7 80 aa7.71□□□□□ -1.18
VPS13D-205ENST00000473099 SPINK6Q6UWN8 80 aa7.71□□□□□ -1.18
VPS13D-205ENST00000473099 SRRM2Q9UQ35 2752 aaKnown RBP7.71□□□□□ -1.18
VPS13D-205ENST00000473099 Q8NBF4 154 aa7.7□□□□□ -1.18
VPS13D-205ENST00000473099 SMR3BP02814 79 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-205ENST00000473099 PLA2G1BP04054 148 aaKnown RBP7.69□□□□□ -1.18
VPS13D-205ENST00000473099 C9orf153Q5TBE3 101 aa7.69□□□□□ -1.18
VPS13D-205ENST00000473099 IGFL1Q6UW32 110 aa7.69□□□□□ -1.18
VPS13D-205ENST00000473099 CDIP1Q9H305 208 aa7.69□□□□□ -1.18
VPS13D-205ENST00000473099 FAM229AH3BQW9 127 aa7.68□□□□□ -1.18
VPS13D-205ENST00000473099 J3QL48 77 aa7.68□□□□□ -1.18
VPS13D-205ENST00000473099 UBL5Q9BZL1 73 aa7.68□□□□□ -1.18
VPS13D-205ENST00000473099 VPS13BQ7Z7G8 4022 aa7.68□□□□□ -1.18
VPS13D-205ENST00000473099 IGLV9-49A0A0B4J1Y8 123 aa7.67□□□□□ -1.18
VPS13D-205ENST00000473099 Q6Q795 121 aa7.67□□□□□ -1.18
VPS13D-205ENST00000473099 LINC00846Q9NV44 126 aa7.67□□□□□ -1.18
VPS13D-205ENST00000473099 A0A1W2PNM2 257 aa7.66□□□□□ -1.18
VPS13D-205ENST00000473099 CRYGAP11844 174 aa7.66□□□□□ -1.18
VPS13D-205ENST00000473099 LINC00643Q86TS7 51 aa7.66□□□□□ -1.18
VPS13D-205ENST00000473099 APOBP04114 4563 aaKnown RBP7.65□□□□□ -1.18
VPS13D-205ENST00000473099 RYR1P21817 5038 aa7.65□□□□□ -1.18
VPS13D-205ENST00000473099 SSBP3-AS1Q7Z2R9 100 aa7.65□□□□□ -1.18
VPS13D-205ENST00000473099 MOBPQ13875 183 aa7.64□□□□□ -1.19
VPS13D-205ENST00000473099 KRTAP10-4P60372 401 aaPredicted RBP7.63□□□□□ -1.19
VPS13D-205ENST00000473099 ATP5EP2Q5VTU8 51 aa7.63□□□□□ -1.19
VPS13D-205ENST00000473099 ABCA13Q86UQ4 5058 aa7.63□□□□□ -1.19
VPS13D-205ENST00000473099 TRBV7-7A0A0K0K1E9 115 aa7.62□□□□□ -1.19
VPS13D-205ENST00000473099 KRTAP1-4P0C5Y4 121 aa7.62□□□□□ -1.19
VPS13D-205ENST00000473099 SIGMAR1Q99720 223 aa7.62□□□□□ -1.19
VPS13D-205ENST00000473099 ANAPC11Q9NYG5 84 aa7.62□□□□□ -1.19
VPS13D-205ENST00000473099 CD164Q04900 197 aa7.6□□□□□ -1.19
VPS13D-205ENST00000473099 NREPQ16612 68 aa7.6□□□□□ -1.19
VPS13D-205ENST00000473099 Q6ZVQ6 151 aa7.6□□□□□ -1.19
VPS13D-205ENST00000473099 KRTAP4-5Q9BYR2 181 aa7.59□□□□□ -1.19
VPS13D-205ENST00000473099 HSPG2P98160 4391 aa7.58□□□□□ -1.2
VPS13D-205ENST00000473099 SS18L2Q9UHA2 77 aa7.58□□□□□ -1.2
VPS13D-205ENST00000473099 A0A087WSZ3 146 aa7.57□□□□□ -1.2
VPS13D-205ENST00000473099 A0A087X002 238 aa7.57□□□□□ -1.2
VPS13D-205ENST00000473099 A0A0G2JQZ4 141 aa7.57□□□□□ -1.2
VPS13D-205ENST00000473099 Q5VSD8 79 aa7.57□□□□□ -1.2
VPS13D-205ENST00000473099 Q8N1X5 172 aa7.57□□□□□ -1.2
VPS13D-205ENST00000473099 IMUPQ9GZP8 106 aa7.57□□□□□ -1.2
VPS13D-205ENST00000473099 MT-ATP8P03928 68 aa7.56□□□□□ -1.2
VPS13D-205ENST00000473099 CXCL6P80162 114 aa7.56□□□□□ -1.2
VPS13D-205ENST00000473099 KRTAP13-2Q52LG2 175 aa7.56□□□□□ -1.2
VPS13D-205ENST00000473099 TYMSOSQ8TAI1 123 aa7.54□□□□□ -1.2
VPS13D-205ENST00000473099 BPY2O14599 106 aa7.52□□□□□ -1.21
VPS13D-205ENST00000473099 PKHD1L1Q86WI1 4243 aa7.51□□□□□ -1.21
VPS13D-205ENST00000473099 IGKV3D-7A0A0C4DH55 119 aa7.51□□□□□ -1.21
VPS13D-205ENST00000473099 LCE2BO14633 110 aa7.51□□□□□ -1.21
VPS13D-205ENST00000473099 HRCT1Q6UXD1 115 aa7.5□□□□□ -1.21
VPS13D-205ENST00000473099 J3KT08 172 aa7.49□□□□□ -1.21
VPS13D-205ENST00000473099 SPAG11AQ6PDA7 123 aa7.49□□□□□ -1.21
VPS13D-205ENST00000473099 SPINK1P00995 79 aa7.48□□□□□ -1.21
VPS13D-205ENST00000473099 SCGB1A1P11684 91 aa7.48□□□□□ -1.21
VPS13D-205ENST00000473099 ASB16-AS1Q495Z4 193 aa7.48□□□□□ -1.21
VPS13D-205ENST00000473099 Q5XG85 94 aa7.48□□□□□ -1.21
VPS13D-205ENST00000473099 PRR26Q8N8Z3 221 aa7.48□□□□□ -1.21
VPS13D-205ENST00000473099 LIMD2Q9BT23 127 aa7.48□□□□□ -1.21
VPS13D-205ENST00000473099 RPS29P62273 56 aaKnown RBP7.47□□□□□ -1.21
VPS13D-205ENST00000473099 LINC00472Q9H8W2 130 aa7.47□□□□□ -1.21
VPS13D-205ENST00000473099 FAT1Q14517 4588 aa7.47□□□□□ -1.21
VPS13D-205ENST00000473099 LINC00304Q8N9R0 145 aa7.46□□□□□ -1.22
VPS13D-205ENST00000473099 HIST1H4AP62805 103 aaKnown RBP7.45□□□□□ -1.22
VPS13D-205ENST00000473099 NDUFB1O75438 58 aa7.41□□□□□ -1.22
VPS13D-205ENST00000473099 DSCR10P59022 87 aa7.41□□□□□ -1.22
VPS13D-205ENST00000473099 Q96NJ1 140 aa7.41□□□□□ -1.22
VPS13D-205ENST00000473099 DMBT1Q9UGM3 2413 aaPredicted RBP7.41□□□□□ -1.22
VPS13D-205ENST00000473099 A8MWP4 228 aa7.4□□□□□ -1.22
VPS13D-205ENST00000473099 IGKV4-1P06312 121 aa7.4□□□□□ -1.22
VPS13D-205ENST00000473099 DEFB116Q30KQ4 102 aa7.39□□□□□ -1.23
VPS13D-205ENST00000473099 FAM236AA0A1B0GUQ0 79 aa7.37□□□□□ -1.23
VPS13D-205ENST00000473099 FAM236BA0A1B0GV22 79 aa7.37□□□□□ -1.23
VPS13D-205ENST00000473099 K7EQZ3 153 aa7.37□□□□□ -1.23
VPS13D-205ENST00000473099 PRR15Q8IV56 129 aa7.37□□□□□ -1.23
VPS13D-205ENST00000473099 A0A087WVE0 104 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms