RNA–Protein interactions for RNA: ENST00000471414.1

COPS3-206, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-206ENST00000471414 NCOA2Q15596 1464 aa-0.77□□□□□ -2.53
COPS3-206ENST00000471414 LINC00158P58513 81 aa-0.77□□□□□ -2.53
COPS3-206ENST00000471414 CUBNO60494 3623 aa-0.77□□□□□ -2.53
COPS3-206ENST00000471414 PKHD1L1Q86WI1 4243 aa-0.78□□□□□ -2.53
COPS3-206ENST00000471414 TEP1Q99973 2627 aaKnown RBP-0.78□□□□□ -2.53
COPS3-206ENST00000471414 HTTP42858 3142 aa-0.78□□□□□ -2.53
COPS3-206ENST00000471414 DEPDC5O75140 1603 aa-0.78□□□□□ -2.54
COPS3-206ENST00000471414 AKAP9Q99996 3911 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 HYDINQ4G0P3 5121 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 PVALEFA0A1B0GWK0 134 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 ACYP1P07311 99 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 PIK3C2BO00750 1634 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 TACC2O95359 2948 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 DIP2BQ9P265 1576 aa-0.79□□□□□ -2.54
COPS3-206ENST00000471414 ANKRD50Q9ULJ7 1429 aa-0.8□□□□□ -2.54
COPS3-206ENST00000471414 ZZEF1O43149 2961 aa-0.8□□□□□ -2.54
COPS3-206ENST00000471414 DDX60LQ5H9U9 1706 aaKnown RBP-0.8□□□□□ -2.54
COPS3-206ENST00000471414 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.8□□□□□ -2.54
COPS3-206ENST00000471414 LCE6AA0A183 80 aa-0.81□□□□□ -2.54
COPS3-206ENST00000471414 ANK3Q12955 4377 aaKnown RBP-0.81□□□□□ -2.54
COPS3-206ENST00000471414 RNF213Q63HN8 5207 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 H0YAA0 97 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 VPS13BQ7Z7G8 4022 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 CCDC88BA6NC98 1476 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 DMXL1Q9Y485 3027 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 PLCH1Q4KWH8 1693 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 DNAH3Q8TD57 4116 aa-0.82□□□□□ -2.54
COPS3-206ENST00000471414 MUC17Q685J3 4493 aa-0.83□□□□□ -2.54
COPS3-206ENST00000471414 MAP3K1Q13233 1512 aa-0.83□□□□□ -2.54
COPS3-206ENST00000471414 EPPK1P58107 5090 aaKnown RBP-0.83□□□□□ -2.54
COPS3-206ENST00000471414 UMAD1C9J7I0 102 aa-0.83□□□□□ -2.54
COPS3-206ENST00000471414 IFI27P40305 119 aaPredicted RBP-0.83□□□□□ -2.54
COPS3-206ENST00000471414 FASNP49327 2511 aaKnown RBP-0.83□□□□□ -2.54
COPS3-206ENST00000471414 VPS13DQ5THJ4 4388 aa-0.83□□□□□ -2.54
COPS3-206ENST00000471414 KANTRA0A1W2PQU2 76 aa-0.84□□□□□ -2.54
COPS3-206ENST00000471414 PRLHP81277 87 aa-0.84□□□□□ -2.54
COPS3-206ENST00000471414 ANKRD11Q6UB99 2663 aaPredicted RBP-0.84□□□□□ -2.54
COPS3-206ENST00000471414 CFAP43Q8NDM7 1665 aa-0.84□□□□□ -2.54
COPS3-206ENST00000471414 LYNX1G3V0Z9 82 aa-0.85□□□□□ -2.55
COPS3-206ENST00000471414 LAMA1P25391 3075 aa-0.85□□□□□ -2.55
COPS3-206ENST00000471414 DEFA5Q01523 94 aa-0.85□□□□□ -2.55
COPS3-206ENST00000471414 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.85□□□□□ -2.55
COPS3-206ENST00000471414 ITSN1Q15811 1721 aa-0.86□□□□□ -2.55
COPS3-206ENST00000471414 UACAQ9BZF9 1416 aa-0.86□□□□□ -2.55
COPS3-206ENST00000471414 NDUFA4O00483 81 aa-0.86□□□□□ -2.55
COPS3-206ENST00000471414 IFI6P09912 130 aa-0.86□□□□□ -2.55
COPS3-206ENST00000471414 APOBP04114 4563 aaKnown RBP-0.86□□□□□ -2.55
COPS3-206ENST00000471414 DSPP15924 2871 aaKnown RBP-0.86□□□□□ -2.55
COPS3-206ENST00000471414 TDRG1Q3Y452 100 aa-0.87□□□□□ -2.55
COPS3-206ENST00000471414 MYO18BQ8IUG5 2567 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 MTORP42345 2549 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 RICTORQ6R327 1708 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 DEFB130BP0DP73 79 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 DEFB130AP0DP74 79 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 ATP5EP2Q5VTU8 51 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 S4R3F8 94 aa-0.88□□□□□ -2.55
COPS3-206ENST00000471414 GCN1Q92616 2671 aaKnown RBP-0.88□□□□□ -2.55
COPS3-206ENST00000471414 IAPPP10997 89 aa-0.89□□□□□ -2.55
COPS3-206ENST00000471414 NREPQ16612 68 aa-0.89□□□□□ -2.55
COPS3-206ENST00000471414 THOC2Q8NI27 1593 aaKnown RBP-0.89□□□□□ -2.55
COPS3-206ENST00000471414 DNAH11Q96DT5 4516 aa-0.9□□□□□ -2.55
COPS3-206ENST00000471414 ITPR3Q14573 2671 aa-0.9□□□□□ -2.55
COPS3-206ENST00000471414 TJP1Q07157 1748 aa-0.9□□□□□ -2.55
COPS3-206ENST00000471414 USP9YO00507 2555 aaPredicted RBP-0.91□□□□□ -2.55
COPS3-206ENST00000471414 ACACAQ13085 2346 aa-0.91□□□□□ -2.56
COPS3-206ENST00000471414 ZC3H13Q5T200 1668 aaKnown RBP-0.91□□□□□ -2.56
COPS3-206ENST00000471414 ANKRD36CQ5JPF3 1778 aa-0.92□□□□□ -2.56
COPS3-206ENST00000471414 HMGA1P17096 107 aaKnown RBP-0.92□□□□□ -2.56
COPS3-206ENST00000471414 DEFB121Q5J5C9 76 aa-0.92□□□□□ -2.56
COPS3-206ENST00000471414 KALRNO60229 2985 aa-0.92□□□□□ -2.56
COPS3-206ENST00000471414 A0A087WXM4 84 aa-0.93□□□□□ -2.56
COPS3-206ENST00000471414 DEFB131BA0A096LNP1 70 aa-0.93□□□□□ -2.56
COPS3-206ENST00000471414 DEFB106AQ8N104 65 aa-0.93□□□□□ -2.56
COPS3-206ENST00000471414 ST20Q9HBF5 79 aa-0.93□□□□□ -2.56
COPS3-206ENST00000471414 KDM5DQ9BY66 1539 aa-0.94□□□□□ -2.56
COPS3-206ENST00000471414 LRRK2Q5S007 2527 aa-0.94□□□□□ -2.56
COPS3-206ENST00000471414 FAM186AA6NE01 2351 aa-0.94□□□□□ -2.56
COPS3-206ENST00000471414 DEFB110Q30KQ9 67 aa-0.94□□□□□ -2.56
COPS3-206ENST00000471414 RNF17Q9BXT8 1623 aaKnown RBP-0.94□□□□□ -2.56
COPS3-206ENST00000471414 CEP290O15078 2479 aa-0.94□□□□□ -2.56
COPS3-206ENST00000471414 MGAM2Q2M2H8 2515 aa-0.95□□□□□ -2.56
COPS3-206ENST00000471414 SMIM13P0DJ93 91 aa-0.95□□□□□ -2.56
COPS3-206ENST00000471414 ADIRFQ15847 76 aa-0.95□□□□□ -2.56
COPS3-206ENST00000471414 RYR2Q92736 4967 aa-0.95□□□□□ -2.56
COPS3-206ENST00000471414 DCAF1Q9Y4B6 1507 aa-0.95□□□□□ -2.56
COPS3-206ENST00000471414 MRPL33O75394 65 aaKnown RBP-0.96□□□□□ -2.56
COPS3-206ENST00000471414 GNG2P59768 71 aa-0.96□□□□□ -2.56
COPS3-206ENST00000471414 KIAA0586Q9BVV6 1533 aa-0.96□□□□□ -2.56
COPS3-206ENST00000471414 SACSQ9NZJ4 4579 aa-0.96□□□□□ -2.56
COPS3-206ENST00000471414 NBEAQ8NFP9 2946 aa-0.96□□□□□ -2.56
COPS3-206ENST00000471414 RB1CC1Q8TDY2 1594 aa-0.96□□□□□ -2.56
COPS3-206ENST00000471414 HFM1A2PYH4 1435 aa-0.97□□□□□ -2.56
COPS3-206ENST00000471414 PARP4Q9UKK3 1724 aaKnown RBP-0.97□□□□□ -2.56
COPS3-206ENST00000471414 PKD1L2Q7Z442 2459 aa-0.97□□□□□ -2.56
COPS3-206ENST00000471414 S100A13Q99584 98 aa-0.97□□□□□ -2.56
COPS3-206ENST00000471414 DNAH1Q9P2D7 4330 aa-0.97□□□□□ -2.57
COPS3-206ENST00000471414 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.97□□□□□ -2.57
COPS3-206ENST00000471414 NBEAL2Q6ZNJ1 2754 aa-0.97□□□□□ -2.57
COPS3-206ENST00000471414 ITSN2Q9NZM3 1697 aa-0.97□□□□□ -2.57
COPS3-206ENST00000471414 MED14O60244 1454 aa-0.98□□□□□ -2.57
Retrieved 100 of 20,778 RNA–protein pairs in 184.9 ms