RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C9orf163Q8N9P6 203 aa11.89□□□□□ -0.51
VIM-203ENST00000469543 J3KT08 172 aa11.89□□□□□ -0.51
VIM-203ENST00000469543 DSCR10P59022 87 aa11.88□□□□□ -0.51
VIM-203ENST00000469543 Q6ZRN7 208 aaPredicted RBP11.88□□□□□ -0.51
VIM-203ENST00000469543 DNAH2Q9P225 4427 aa11.87□□□□□ -0.51
VIM-203ENST00000469543 K7EQZ3 153 aa11.87□□□□□ -0.51
VIM-203ENST00000469543 FRAS1Q86XX4 4008 aa11.87□□□□□ -0.51
VIM-203ENST00000469543 BCE1O60756 84 aa11.87□□□□□ -0.51
VIM-203ENST00000469543 F8WEM9 126 aa11.86□□□□□ -0.51
VIM-203ENST00000469543 KLKP1Q107X0 134 aa11.86□□□□□ -0.51
VIM-203ENST00000469543 OCR1Q9BZK8 76 aa11.85□□□□□ -0.51
VIM-203ENST00000469543 FAM30AQ9NZY2 134 aa11.85□□□□□ -0.51
VIM-203ENST00000469543 VPS13DQ5THJ4 4388 aa11.84□□□□□ -0.51
VIM-203ENST00000469543 FBN3Q75N90 2809 aa11.84□□□□□ -0.51
VIM-203ENST00000469543 A0A087WSZ3 146 aa11.84□□□□□ -0.51
VIM-203ENST00000469543 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.83□□□□□ -0.51
VIM-203ENST00000469543 UBE2AP49459 152 aa11.83□□□□□ -0.52
VIM-203ENST00000469543 C14orf177Q52M58 125 aa11.83□□□□□ -0.52
VIM-203ENST00000469543 HECTD4Q9Y4D8 3996 aa11.82□□□□□ -0.52
VIM-203ENST00000469543 TMEM254Q8TBM7 123 aa11.82□□□□□ -0.52
VIM-203ENST00000469543 NUPR2A6NF83 97 aa11.8□□□□□ -0.52
VIM-203ENST00000469543 RPL37AP61513 92 aaKnown RBP11.8□□□□□ -0.52
VIM-203ENST00000469543 RPS28P62857 69 aaKnown RBP11.8□□□□□ -0.52
VIM-203ENST00000469543 FAM236DA0A1B0GTK5 79 aa11.79□□□□□ -0.52
VIM-203ENST00000469543 FAM236CP0DP71 79 aa11.79□□□□□ -0.52
VIM-203ENST00000469543 A0A1B0GW54 56 aa11.76□□□□□ -0.53
VIM-203ENST00000469543 IGLV8-61A0A075B6I0 122 aa11.72□□□□□ -0.53
VIM-203ENST00000469543 A0A087WTM6 91 aa11.71□□□□□ -0.53
VIM-203ENST00000469543 WFDC13Q8IUB5 93 aa11.71□□□□□ -0.53
VIM-203ENST00000469543 DNAH6Q9C0G6 4158 aa11.7□□□□□ -0.54
VIM-203ENST00000469543 A0A0U1RQV1 116 aa11.69□□□□□ -0.54
VIM-203ENST00000469543 SPACA4Q8TDM5 124 aa11.69□□□□□ -0.54
VIM-203ENST00000469543 H0Y9J4 135 aa11.68□□□□□ -0.54
VIM-203ENST00000469543 DNAH8Q96JB1 4490 aa11.68□□□□□ -0.54
VIM-203ENST00000469543 DNAH17Q9UFH2 4485 aa11.68□□□□□ -0.54
VIM-203ENST00000469543 LINC00474Q9P2X8 69 aa11.68□□□□□ -0.54
VIM-203ENST00000469543 KRTAP13-1Q8IUC0 172 aa11.67□□□□□ -0.54
VIM-203ENST00000469543 ANAPC11Q9NYG5 84 aa11.67□□□□□ -0.54
VIM-203ENST00000469543 IGLV9-49A0A0B4J1Y8 123 aa11.67□□□□□ -0.54
VIM-203ENST00000469543 C4orf26Q17RF5 130 aa11.67□□□□□ -0.54
VIM-203ENST00000469543 HCG22E2RYF7 251 aa11.66□□□□□ -0.54
VIM-203ENST00000469543 SPRR1BP22528 89 aa11.65□□□□□ -0.54
VIM-203ENST00000469543 RTL8CO15255 209 aa11.63□□□□□ -0.55
VIM-203ENST00000469543 HRCT1Q6UXD1 115 aa11.63□□□□□ -0.55
VIM-203ENST00000469543 Q5XG85 94 aa11.63□□□□□ -0.55
VIM-203ENST00000469543 NDUFC1O43677 76 aa11.6□□□□□ -0.55
VIM-203ENST00000469543 PSORS1C2Q9UIG4 136 aa11.6□□□□□ -0.55
VIM-203ENST00000469543 SERP1Q9Y6X1 66 aa11.6□□□□□ -0.55
VIM-203ENST00000469543 Q6ZR54 194 aa11.58□□□□□ -0.56
VIM-203ENST00000469543 LINC00472Q9H8W2 130 aa11.58□□□□□ -0.56
VIM-203ENST00000469543 LY6G6CO95867 125 aa11.54□□□□□ -0.56
VIM-203ENST00000469543 LCE6AA0A183 80 aa11.54□□□□□ -0.56
VIM-203ENST00000469543 FAM229BQ4G0N7 80 aa11.54□□□□□ -0.56
VIM-203ENST00000469543 PRR4Q16378 134 aa11.53□□□□□ -0.56
VIM-203ENST00000469543 PRR15Q8IV56 129 aa11.53□□□□□ -0.56
VIM-203ENST00000469543 DNAH11Q96DT5 4516 aa11.52□□□□□ -0.56
VIM-203ENST00000469543 FP248Q71RG6 208 aaPredicted RBP11.52□□□□□ -0.57
VIM-203ENST00000469543 IGLV5-52A0A0A0MRZ9 124 aa11.51□□□□□ -0.57
VIM-203ENST00000469543 KRTAP29-1A8MX34 341 aaPredicted RBP11.51□□□□□ -0.57
VIM-203ENST00000469543 HYDINQ4G0P3 5121 aa11.51□□□□□ -0.57
VIM-203ENST00000469543 PKIGQ9Y2B9 76 aa11.51□□□□□ -0.57
VIM-203ENST00000469543 MOBPQ13875 183 aa11.5□□□□□ -0.57
VIM-203ENST00000469543 CASC2Q6XLA1 102 aa11.5□□□□□ -0.57
VIM-203ENST00000469543 A8MWP4 228 aa11.49□□□□□ -0.57
VIM-203ENST00000469543 C5orf47Q569G3 176 aa11.49□□□□□ -0.57
VIM-203ENST00000469543 ZCCHC13Q8WW36 166 aaKnown RBP11.49□□□□□ -0.57
VIM-203ENST00000469543 C1orf134Q5TEV5 83 aa11.48□□□□□ -0.57
VIM-203ENST00000469543 DNAH5Q8TE73 4624 aa11.47□□□□□ -0.57
VIM-203ENST00000469543 WWC2-AS2Q96NR7 200 aa11.46□□□□□ -0.57
VIM-203ENST00000469543 Q96NJ1 140 aa11.46□□□□□ -0.58
VIM-203ENST00000469543 PLAC8Q9NZF1 115 aa11.46□□□□□ -0.58
VIM-203ENST00000469543 ALMS1Q8TCU4 4167 aa11.46□□□□□ -0.58
VIM-203ENST00000469543 LINC00208Q96KT6 92 aa11.44□□□□□ -0.58
VIM-203ENST00000469543 ZNF861PO60384 105 aa11.43□□□□□ -0.58
VIM-203ENST00000469543 KRTAP10-2P60368 255 aa11.43□□□□□ -0.58
VIM-203ENST00000469543 LINC00483Q53H64 154 aa11.43□□□□□ -0.58
VIM-203ENST00000469543 MPLKIPQ8TAP9 179 aa11.42□□□□□ -0.58
VIM-203ENST00000469543 LRP1BQ9NZR2 4599 aa11.41□□□□□ -0.58
VIM-203ENST00000469543 SMIM26A0A096LP01 95 aa11.39□□□□□ -0.59
VIM-203ENST00000469543 MMP24-AS1A0A0U1RRL7 71 aa11.39□□□□□ -0.59
VIM-203ENST00000469543 ATP5EP56381 51 aaPredicted RBP11.39□□□□□ -0.59
VIM-203ENST00000469543 H0Y9P7 68 aa11.36□□□□□ -0.59
VIM-203ENST00000469543 C1orf64Q8NEQ6 169 aa11.36□□□□□ -0.59
VIM-203ENST00000469543 A0A087X002 238 aa11.36□□□□□ -0.59
VIM-203ENST00000469543 MP68P56378 58 aa11.36□□□□□ -0.59
VIM-203ENST00000469543 NOTCH2NLQ7Z3S9 236 aa11.36□□□□□ -0.59
VIM-203ENST00000469543 CIRBP-AS1Q8TBR5 109 aa11.35□□□□□ -0.59
VIM-203ENST00000469543 IGHV6-1A0A0B4J1U7 121 aa11.35□□□□□ -0.59
VIM-203ENST00000469543 hDV103S1A0JD37 113 aa11.35□□□□□ -0.59
VIM-203ENST00000469543 NDUFB1O75438 58 aa11.33□□□□□ -0.59
VIM-203ENST00000469543 PKD1P98161 4303 aa11.33□□□□□ -0.6
VIM-203ENST00000469543 IGLV7-43P04211 117 aa11.33□□□□□ -0.6
VIM-203ENST00000469543 ZNF706Q9Y5V0 76 aaPredicted RBP11.32□□□□□ -0.6
VIM-203ENST00000469543 TRAV22A0A0B4J277 110 aa11.32□□□□□ -0.6
VIM-203ENST00000469543 FAT2Q9NYQ8 4349 aa11.32□□□□□ -0.6
VIM-203ENST00000469543 SPINK6Q6UWN8 80 aa11.32□□□□□ -0.6
VIM-203ENST00000469543 LINC00336Q6ZUF6 198 aa11.29□□□□□ -0.6
VIM-203ENST00000469543 C8orf17Q9NRJ1 99 aa11.26□□□□□ -0.61
VIM-203ENST00000469543 NDUFS5O43920 106 aa11.25□□□□□ -0.61
VIM-203ENST00000469543 PKHD1P08F94 4074 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms