RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 Q6ZQY7 126 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 KRTAP7-1Q8IUC3 87 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 ANKRD29Q8N6D5 301 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 Q8NDZ9 215 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 STARD9Q9P2P6 4700 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 A0A1B0GW54 56 aa3.58□□□□□ -1.84
SYNE1-219ENST00000469439 PANO1I0J062 215 aa3.58□□□□□ -1.84
SYNE1-219ENST00000469439 Q6JHZ5 121 aa3.58□□□□□ -1.84
SYNE1-219ENST00000469439 SMCR5Q8TEV8 140 aa3.58□□□□□ -1.84
SYNE1-219ENST00000469439 CLEC2BQ92478 149 aa3.58□□□□□ -1.84
SYNE1-219ENST00000469439 DSCR8Q96T75 97 aa3.58□□□□□ -1.84
SYNE1-219ENST00000469439 FUSP35637 526 aaKnown RBP eCLIP3.57□□□□□ -1.84
SYNE1-219ENST00000469439 XGP55808 180 aa3.57□□□□□ -1.84
SYNE1-219ENST00000469439 RBM3P98179 157 aaKnown RBP3.57□□□□□ -1.84
SYNE1-219ENST00000469439 FAM229BQ4G0N7 80 aa3.57□□□□□ -1.84
SYNE1-219ENST00000469439 ALMS1Q8TCU4 4167 aa3.57□□□□□ -1.84
SYNE1-219ENST00000469439 LINC01600Q96MT4 127 aa3.57□□□□□ -1.84
SYNE1-219ENST00000469439 NAA38Q9BRA0 125 aaKnown RBP3.57□□□□□ -1.84
SYNE1-219ENST00000469439 IGLV5-48A0A075B6I7 105 aa3.56□□□□□ -1.84
SYNE1-219ENST00000469439 SPRR1BP22528 89 aa3.56□□□□□ -1.84
SYNE1-219ENST00000469439 PRLHP81277 87 aa3.56□□□□□ -1.84
SYNE1-219ENST00000469439 PLECQ15149 4684 aaKnown RBP3.55□□□□□ -1.84
SYNE1-219ENST00000469439 A0A1B0GV90 55 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 CRYGAP11844 174 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 NDUFV3P56181 108 aaKnown RBP3.55□□□□□ -1.84
SYNE1-219ENST00000469439 KRTAP5-1Q6L8H4 278 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 SSBP3-AS1Q7Z2R9 100 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 TEN1Q86WV5 123 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 KRTAP13-1Q8IUC0 172 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 DEFB105AQ8NG35 78 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 Q9BRP9 147 aa3.55□□□□□ -1.84
SYNE1-219ENST00000469439 KMT2AQ03164 3969 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 ACYP1P07311 99 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 LINC00483Q53H64 154 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 GAGE2AQ6NT46 116 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 FAM218AQ96MZ4 157 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 SPRR4Q96PI1 79 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 VPS13DQ5THJ4 4388 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 LYSTQ99698 3801 aa3.54□□□□□ -1.84
SYNE1-219ENST00000469439 K7ERU9 68 aa3.53□□□□□ -1.84
SYNE1-219ENST00000469439 SEC61BP60468 96 aaKnown RBP3.53□□□□□ -1.84
SYNE1-219ENST00000469439 SPAG11AQ6PDA7 123 aa3.53□□□□□ -1.84
SYNE1-219ENST00000469439 SMR3BP02814 79 aaPredicted RBP3.52□□□□□ -1.85
SYNE1-219ENST00000469439 Q5VSD8 79 aa3.52□□□□□ -1.85
SYNE1-219ENST00000469439 Q8N377 158 aa3.52□□□□□ -1.85
SYNE1-219ENST00000469439 Q8NBF4 154 aa3.52□□□□□ -1.85
SYNE1-219ENST00000469439 SS18L2Q9UHA2 77 aa3.52□□□□□ -1.85
SYNE1-219ENST00000469439 DNAH6Q9C0G6 4158 aa3.52□□□□□ -1.85
SYNE1-219ENST00000469439 IGLV8-61A0A075B6I0 122 aa3.51□□□□□ -1.85
SYNE1-219ENST00000469439 LOC110117498A0A087WWA1 95 aa3.51□□□□□ -1.85
SYNE1-219ENST00000469439 CD164Q04900 197 aa3.51□□□□□ -1.85
SYNE1-219ENST00000469439 C9orf153Q5TBE3 101 aa3.51□□□□□ -1.85
SYNE1-219ENST00000469439 TRBV7-4A0A0J9YYF1 115 aa3.5□□□□□ -1.85
SYNE1-219ENST00000469439 ERC2-IT1O76042 136 aa3.5□□□□□ -1.85
SYNE1-219ENST00000469439 ETDBQ3ZM63 59 aa3.5□□□□□ -1.85
SYNE1-219ENST00000469439 KRTAP11-1Q8IUC1 163 aa3.5□□□□□ -1.85
SYNE1-219ENST00000469439 TYMSOSQ8TAI1 123 aa3.5□□□□□ -1.85
SYNE1-219ENST00000469439 LIMD2Q9BT23 127 aa3.5□□□□□ -1.85
SYNE1-219ENST00000469439 DNAH1Q9P2D7 4330 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 FAM240AA0A1B0GVK7 77 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 OXTP01178 125 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 CCKP06307 115 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 HAMPP81172 84 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 Q6Q795 121 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 SMIM29Q86T20 159 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 ST20-AS1Q8NBB2 130 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 OBSCN-AS1Q96MR7 158 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 UBL5Q9BZL1 73 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 PRO0461Q9UI25 63 aa3.49□□□□□ -1.85
SYNE1-219ENST00000469439 IGLV9-49A0A0B4J1Y8 123 aa3.48□□□□□ -1.85
SYNE1-219ENST00000469439 SPINK1P00995 79 aa3.48□□□□□ -1.85
SYNE1-219ENST00000469439 LINC01547P58512 204 aaPredicted RBP3.48□□□□□ -1.85
SYNE1-219ENST00000469439 RPS29P62273 56 aaKnown RBP3.48□□□□□ -1.85
SYNE1-219ENST00000469439 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
SYNE1-219ENST00000469439 MOBPQ13875 183 aa3.47□□□□□ -1.85
SYNE1-219ENST00000469439 Q75L30 129 aa3.47□□□□□ -1.85
SYNE1-219ENST00000469439 J3KT08 172 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 KRTAP10-12P60413 245 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 NREPQ16612 68 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 Q6ZQT0 140 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 MTURNQ8N3F0 131 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 VPS25Q9BRG1 176 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 C14orf132Q9NPU4 83 aa3.46□□□□□ -1.86
SYNE1-219ENST00000469439 ATP5EP2Q5VTU8 51 aa3.45□□□□□ -1.86
SYNE1-219ENST00000469439 NDUFB1O75438 58 aa3.44□□□□□ -1.86
SYNE1-219ENST00000469439 Q5XG85 94 aa3.44□□□□□ -1.86
SYNE1-219ENST00000469439 IGFL1Q6UW32 110 aa3.44□□□□□ -1.86
SYNE1-219ENST00000469439 C3orf22Q8N5N4 141 aa3.44□□□□□ -1.86
SYNE1-219ENST00000469439 LINC00304Q8N9R0 145 aa3.44□□□□□ -1.86
SYNE1-219ENST00000469439 TRBV7-7A0A0K0K1E9 115 aa3.43□□□□□ -1.86
SYNE1-219ENST00000469439 KRTAP1-4P0C5Y4 121 aa3.43□□□□□ -1.86
SYNE1-219ENST00000469439 ASB16-AS1Q495Z4 193 aa3.43□□□□□ -1.86
SYNE1-219ENST00000469439 DNAH17Q9UFH2 4485 aa3.42□□□□□ -1.86
SYNE1-219ENST00000469439 KRTAP9-6A8MVA2 160 aa3.42□□□□□ -1.86
SYNE1-219ENST00000469439 KRTAP10-4P60372 401 aaPredicted RBP3.42□□□□□ -1.86
SYNE1-219ENST00000469439 LINC00643Q86TS7 51 aa3.42□□□□□ -1.86
SYNE1-219ENST00000469439 A0A1B0GV72 72 aa3.41□□□□□ -1.86
SYNE1-219ENST00000469439 KRTAP5-4Q6L8H1 288 aa3.41□□□□□ -1.86
SYNE1-219ENST00000469439 SIGMAR1Q99720 223 aa3.41□□□□□ -1.86
SYNE1-219ENST00000469439 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms