RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 UQCR11O14957 56 aa3.32□□□□□ -1.88
VPS41-209ENST00000457055 ZNF137PP52743 207 aa3.32□□□□□ -1.88
VPS41-209ENST00000457055 CCL18P55774 89 aa3.32□□□□□ -1.88
VPS41-209ENST00000457055 RPL38P63173 70 aaKnown RBP3.32□□□□□ -1.88
VPS41-209ENST00000457055 WFDC10AQ9H1F0 79 aa3.32□□□□□ -1.88
VPS41-209ENST00000457055 ROS1P08922 2347 aa3.32□□□□□ -1.88
VPS41-209ENST00000457055 CCL3L1P16619 93 aa3.31□□□□□ -1.88
VPS41-209ENST00000457055 DEFB116Q30KQ4 102 aa3.31□□□□□ -1.88
VPS41-209ENST00000457055 ZCCHC13Q8WW36 166 aaKnown RBP3.31□□□□□ -1.88
VPS41-209ENST00000457055 HIGD2AQ9BW72 106 aa3.31□□□□□ -1.88
VPS41-209ENST00000457055 PRR14LQ5THK1 2151 aa3.3□□□□□ -1.88
VPS41-209ENST00000457055 PDE6GP18545 87 aa3.3□□□□□ -1.88
VPS41-209ENST00000457055 C4orf3Q8WVX3 66 aa3.3□□□□□ -1.88
VPS41-209ENST00000457055 LITAFQ99732 161 aa3.3□□□□□ -1.88
VPS41-209ENST00000457055 NUP214P35658 2090 aaPredicted RBP3.3□□□□□ -1.88
VPS41-209ENST00000457055 HYDINQ4G0P3 5121 aa3.3□□□□□ -1.88
VPS41-209ENST00000457055 PDE6HQ13956 83 aa3.29□□□□□ -1.88
VPS41-209ENST00000457055 C10orf113Q5VZT2 155 aa3.29□□□□□ -1.88
VPS41-209ENST00000457055 Q5W150 140 aa3.29□□□□□ -1.88
VPS41-209ENST00000457055 GAFA1Q96PS6 74 aa3.29□□□□□ -1.88
VPS41-209ENST00000457055 H0YGX0 51 aa3.28□□□□□ -1.88
VPS41-209ENST00000457055 STATHP02808 62 aa3.28□□□□□ -1.88
VPS41-209ENST00000457055 CTSGP08311 255 aa3.28□□□□□ -1.88
VPS41-209ENST00000457055 SPINK7P58062 85 aa3.28□□□□□ -1.88
VPS41-209ENST00000457055 RPS27LQ71UM5 84 aaKnown RBP3.28□□□□□ -1.88
VPS41-209ENST00000457055 C9orf163Q8N9P6 203 aa3.28□□□□□ -1.88
VPS41-209ENST00000457055 ST20-AS1Q8NBB2 130 aa3.28□□□□□ -1.88
VPS41-209ENST00000457055 RYR1P21817 5038 aa3.27□□□□□ -1.89
VPS41-209ENST00000457055 SPATA8Q6RVD6 105 aa3.27□□□□□ -1.89
VPS41-209ENST00000457055 RNASE3P12724 160 aaKnown RBP3.26□□□□□ -1.89
VPS41-209ENST00000457055 DEFB114Q30KQ6 69 aa3.26□□□□□ -1.89
VPS41-209ENST00000457055 DEFB112Q30KQ8 113 aa3.26□□□□□ -1.89
VPS41-209ENST00000457055 LINC00322Q6ZN03 302 aaPredicted RBP3.26□□□□□ -1.89
VPS41-209ENST00000457055 KLK9Q9UKQ9 250 aa3.26□□□□□ -1.89
VPS41-209ENST00000457055 TRGV4A0A0C4DH28 118 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 IGKV3OR2-268A0A0C4DH90 116 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 CPSF4LA6NMK7 179 aaKnown RBP3.25□□□□□ -1.89
VPS41-209ENST00000457055 NDUFA4O00483 81 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 HAMPP81172 84 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 NDPQ00604 133 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 HCP5Q6MZN7 132 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 DEFB106AQ8N104 65 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 SPRR4Q96PI1 79 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 PCLOQ9Y6V0 5065 aa3.25□□□□□ -1.89
VPS41-209ENST00000457055 OBSCNQ5VST9 7968 aa3.24□□□□□ -1.89
VPS41-209ENST00000457055 SPINK14Q6IE38 97 aa3.24□□□□□ -1.89
VPS41-209ENST00000457055 SPINT4Q6UDR6 99 aa3.24□□□□□ -1.89
VPS41-209ENST00000457055 TYMSOSQ8TAI1 123 aa3.24□□□□□ -1.89
VPS41-209ENST00000457055 TENM2Q9NT68 2774 aa3.24□□□□□ -1.89
VPS41-209ENST00000457055 RYR2Q92736 4967 aa3.24□□□□□ -1.89
VPS41-209ENST00000457055 COL7A1Q02388 2944 aa3.23□□□□□ -1.89
VPS41-209ENST00000457055 LOC110117498A0A087WWA1 95 aa3.23□□□□□ -1.89
VPS41-209ENST00000457055 FAM168BA1KXE4 195 aa3.23□□□□□ -1.89
VPS41-209ENST00000457055 IAPPP10997 89 aa3.23□□□□□ -1.89
VPS41-209ENST00000457055 DEFB110Q30KQ9 67 aa3.23□□□□□ -1.89
VPS41-209ENST00000457055 ZNF625Q96I27 306 aaPredicted RBP3.23□□□□□ -1.89
VPS41-209ENST00000457055 SACSQ9NZJ4 4579 aa3.22□□□□□ -1.89
VPS41-209ENST00000457055 ZNF861PO60384 105 aa3.22□□□□□ -1.89
VPS41-209ENST00000457055 COX17Q14061 63 aa3.22□□□□□ -1.89
VPS41-209ENST00000457055 COX14Q96I36 57 aa3.22□□□□□ -1.89
VPS41-209ENST00000457055 CCL19Q99731 98 aa3.22□□□□□ -1.89
VPS41-209ENST00000457055 DYNC2H1Q8NCM8 4307 aaKnown RBP3.22□□□□□ -1.89
VPS41-209ENST00000457055 IGLV3-1P01715 115 aa3.21□□□□□ -1.9
VPS41-209ENST00000457055 COA5Q86WW8 74 aa3.21□□□□□ -1.9
VPS41-209ENST00000457055 ETDCA0A1B0GVM5 59 aa3.2□□□□□ -1.9
VPS41-209ENST00000457055 PRB2P02812 416 aaPredicted RBP3.2□□□□□ -1.9
VPS41-209ENST00000457055 FXYD4P59646 89 aa3.2□□□□□ -1.9
VPS41-209ENST00000457055 ARHGAP5-AS1Q96IT6 56 aa3.2□□□□□ -1.9
VPS41-209ENST00000457055 PSORS1C2Q9UIG4 136 aa3.2□□□□□ -1.9
VPS41-209ENST00000457055 TENM3Q9P273 2699 aa3.2□□□□□ -1.9
VPS41-209ENST00000457055 TRBV6-4A0A1B0GX49 114 aa3.19□□□□□ -1.9
VPS41-209ENST00000457055 NCR3O14931 201 aa3.19□□□□□ -1.9
VPS41-209ENST00000457055 Q6ZTI0 123 aa3.19□□□□□ -1.9
VPS41-209ENST00000457055 HERC2O95714 4834 aa3.19□□□□□ -1.9
VPS41-209ENST00000457055 TNCP24821 2201 aa3.19□□□□□ -1.9
VPS41-209ENST00000457055 IGKV2-40A0A087WW87 121 aaPredicted RBP3.18□□□□□ -1.9
VPS41-209ENST00000457055 A0A096LNT2 108 aa3.18□□□□□ -1.9
VPS41-209ENST00000457055 DEFB108AA8MXU0 73 aa3.18□□□□□ -1.9
VPS41-209ENST00000457055 IGKV2D-40P01614 121 aaPredicted RBP3.18□□□□□ -1.9
VPS41-209ENST00000457055 IGKV3-15P01624 115 aa3.18□□□□□ -1.9
VPS41-209ENST00000457055 TTTY10Q9BZA0 68 aa3.18□□□□□ -1.9
VPS41-209ENST00000457055 KCNQ1DNQ9H478 68 aa3.18□□□□□ -1.9
VPS41-209ENST00000457055 PRO2289Q9P1D8 64 aa3.18□□□□□ -1.9
VPS41-209ENST00000457055 IGLV4-69A0A075B6H9 119 aa3.17□□□□□ -1.9
VPS41-209ENST00000457055 TRGV2A0A075B6R0 118 aa3.17□□□□□ -1.9
VPS41-209ENST00000457055 DNAH1Q9P2D7 4330 aa3.17□□□□□ -1.9
VPS41-209ENST00000457055 DNAH9Q9NYC9 4486 aa3.17□□□□□ -1.9
VPS41-209ENST00000457055 A0A087WTM6 91 aa3.16□□□□□ -1.9
VPS41-209ENST00000457055 LINC00959A0A1B0GUT2 108 aa3.16□□□□□ -1.9
VPS41-209ENST00000457055 CSMD3Q7Z407 3707 aa3.16□□□□□ -1.9
VPS41-209ENST00000457055 A0A1B0GU69 56 aa3.15□□□□□ -1.91
VPS41-209ENST00000457055 COX7BP24311 80 aa3.15□□□□□ -1.91
VPS41-209ENST00000457055 RPL37AP61513 92 aaKnown RBP3.15□□□□□ -1.91
VPS41-209ENST00000457055 SMIM2Q9BVW6 85 aa3.15□□□□□ -1.91
VPS41-209ENST00000457055 KRTAP4-3Q9BYR4 195 aa3.15□□□□□ -1.91
VPS41-209ENST00000457055 WNK2Q9Y3S1 2297 aa3.15□□□□□ -1.91
VPS41-209ENST00000457055 PLCE1Q9P212 2302 aa3.14□□□□□ -1.91
VPS41-209ENST00000457055 TRGV1A0A0A0MS02 117 aa3.14□□□□□ -1.91
VPS41-209ENST00000457055 A0A0J9YWU9 116 aa3.14□□□□□ -1.91
VPS41-209ENST00000457055 IGKV4-1P06312 121 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms